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NIES collection MICROBIAL CULTURE COLLECTION General information Search on strains data List of strains Taxonomic index Alphabetical index How to order Cart Japanese HOME Search Reference Search Reference Search Reference Author index Search Reference Author ※All entry names will be shown in a separate window. Keyword   ※All entry names will be shown in a separate window. AND  OR Strain No. NIES- Genus ※All entry names will be shown in a separate window. Species ※All entry names will be shown in a separate window. If you search without any typing, all records will be displayed. Author index [A]   [B]   [C]   [D]   [E]   [F]   [G]   [H]   [I]   [J]   [K]   [L]   [M]   [N]   [O]   [P]   [Q]   [R]   [S]   [T]   [U]   [V]   [W]   [X]   [Y]   [Z]   [ALL]   Abd Karim, F. F., Mohamad, S. E., Shaza, E. M., Iwamoto, K. 2021 Initial study on the growth of Haematococus pluvialis for astaxanthin production. IOP Conf. Ser.: Earth Environ. Sci., 765, 012064 (article ID). Strain(s): 144  DOI: 10.1088/1755-1315/765/1/012064 Abe, J., Hirano, N., Komiya, A., Kanda, N., Fujiwara, A., Hori, S., Tsuchikane, Y., Sekimoto, H. 2016 Preparation of knockdown transformants of unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Bio-protocol, 6, e1813 (article ID). Keywords: Knockdown; Alga; Closterium; Charophycean; Transformation Strain(s): 67,  68  DOI: 10.21769/BioProtoc.1813 Abe, J., Hiwatashi, Y., Ito, M., Hasebe, M., Sekimoto, H. 2008 Expression of exogenous genes under the control of endogenous HSP70 and CAB promoters in the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 49, 625-632. Strain(s): 68  PubMed: 18308758 DOI: 10.1093/pcp/pcn039 Abe, J., Hori, S., Sato, M., Sekimoto, H. 2016 Concanavalin A disrupts the release of fibrous material necessary for zygote formation of a unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Front. Plant Sci., 7, 1040 (article ID). Keywords: charophycean; Closterium; conjugation; gamete; Concanavalin A (Con A); sexual reproduction Strain(s): 67,  68  PubMed: 27468295 DOI: 10.3389/fpls.2016.01040 Abe, J., Hori, S., Tsuchikane, Y., Kitao, N., Kato, M., Shiraiwa, H. 2011 Stable nuclear transformation of the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 52, 1676-1685. Strain(s): 67,  68  PubMed: 21804095 DOI: 10.1093/pcp/pcr103 Abe, J., Kubo, T., Takagi, Y., Saito, T., Miura, K., Fukuzawa, H., Matsuda, Y. 2004 The transcriptional program of synchronous gametogenesis in Chlamydomonas reinhardtii. Curr. Genet., 46, 304-315. Strain(s): 2235  PubMed: 15459796 DOI: 10.1007/s00294-004-0526-4 Abe, M., Okuda, Y., Hashimoto, S. 2022 Effects of light intensity on the production of VSLs from the marine diatom Ditylum brightwellii. J. Atmos. Chem., 79, 1–16. Keywords: Chloroform; Bromoform; Halogenated hydrocarbons; Ditylum; Phytoplankton; Light dependence Strain(s): 350  DOI: 10.1007/s10874-021-09426-9 Abe, T., Tsuzuki, M., Kaplan, A., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. II. Effect of sodium concentration during growth on the induction of active transport system for IC. Plant Cell Physiol., 28, 671-677. Keywords: Anabaena variabilis; CO2 accumulation; cyanobacterial growth; photosynthesis; sodium Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a077343 Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. III. Some characteristics of the HCO3-transport system in cells grown under ordinary air. Plant Cell Physiol., 28, 867-874. Keywords: Anabaena; carbonic anhydrase; IC transport; photosynthesis; sodium Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a077368 Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis of Anabaena grown under ordinary air. I. Active species of inorganic carbon utilized for photosynthesis. Plant Cell Physiol., 28, 273-281. Keywords: Anabaena; carbon dioxide fixation; cyanobacterium; IC transport photosynthesis Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a077293 Abeynayaka, HDL., Asaeda, T., Rashid, MH. 2018 Effects of elevated pressure on Pseudanabaena galeata Böcher in varying light and dark environments. Environ. Sci. Pollut. Res., 25, 21224–21232. Keywords: Cyanobacteria; Hydrostatic pressure; Pseudanabaena galeata Böcher; Prolonged darkness; Chlorophyll-a; Cell concentration Strain(s): 512  PubMed: 29779078 DOI: 10.1007/s11356-018-2218-5 Abram, M., Białek, R., Szewczyk, S., Karolczak, J., Gibasiewicz, K., Kargul, J. 2020 Remodeling of excitation energy transfer in extremophilic red algal PSI-LHCI complex during light adaptation. Biochim. Biophys. Acta-Bioenerg., 1861, 148093 (article ID). Keywords: Photosystem I; Light harvesting complex I; Time-resolved fluorescence; Extremophilic red alga Cyanidioschyzon merolae; Light adaptation; Red chlorophylls Strain(s): 1332  PubMed: 31669460 DOI: 10.1016/j.bbabio.2019.148093 Agarkova, I. V., Lane, L. C., Dunigan, D. D., Quispe, C. F., Duncan, G. A., Milrot, E., Minsky, A., Esmael, A., Ghosh, J. F., Van Etten, J. L. 2021 Identification of a chlorovirus PBCV-1 protein involved in degrading the host cell wall during virus infection. Viruses-Basel, 13, 782 (article ID). Keywords: Chlorella; Phycodnaviridae; chlorovirus; PBCV-1; algal lytic activity; cell wall degrading activity; alginate-like lyase Strain(s): 2540,  2541  PubMed: 33924931 DOI: 10.3390/v13050782 Águila, B., Alcántara-Hernández, R. J., Montejano, G., López-Martínez, R., Falcón, L. I., Becerra-Absalón, I. 2021 Cyanobacteria in microbialites of Alchichica Crater Lake: a polyphasic characterization. Eur. J. Phycol., , 428-443. Keywords: Clone libraries; depth gradient; microscopy; NGS library; oxyphotobacteriav; stromatolites; taxonomy Strain(s): 4393,  4394,  4395,  4396,  4397,  4398  DOI: 10.1080/09670262.2020.1853815 Ahamefule, S. C., Ogbonna, J. C., Moneke, A. N., Ossai, N. I. 2018 Application of photosynthetic microalgae as efficient pH bio-stabilizers and bio-purifiers in sustainable aquaculture of Clarias gariepinus (African catfish) fry. Nig. J. Biotech., 35, 139-150. Keywords: nitrogen removal; ammonia; nitrite; fishery; fish pond Strain(s): 93  DOI: 10.4314/njb.v35i2.17 Aida, T. M., Nonaka, T., Fukuda, S., Kujiraoka, H., Kumagai, Y., Maruta, R., Ota, M., Suzuki, I., Watanabe, M. M., Inomata, H., Smith Jr., R. L. 2016 Nutrient recovery from municipal sludge for microalgae cultivation with two-step hydrothermal liquefaction. Algal Res., 18, 61-68. Keywords: Biosolid treatment process; High temperature water; Internal recycle; Wastewater treatment; Microalgae cultivation Strain(s): 48  DOI: 10.1016/j.algal.2016.06.009 Aikawa, S., Ho, S-H., Nakanishi, A., Chang, J-S., Hasunuma, T., Kondo, A. 2015 Improving polyglucan production in cyanobacteria and microalgae via cultivation design and metabolic engineering. Biotechnol. J., 10, 886-898. Keywords: Bioethanol; Cyanobacteria; Metabolic engineering; Microalgae; Polyglucan Strain(s): 39  PubMed: 25867926 DOI: 10.1002/biot.201400344 Aikawa, S., Inokuma, K., Wakai, S., Sasaki, K., Ogino, C., Chang, J-S., Hasunuma, T., Kondo, A. 2018 Direct and highly productive conversion of cyanobacteria Arthrospira platensis to ethanol with CaCl2 addition. Biotechnol. Biofuels, 11, 50 (article ID). Keywords: Ethanol conversion; Glycogen extraction; Cyanobacteria; Amylase-displaying yeast; Polysaccharide layer; Organic nutrient Strain(s): 39  PubMed: 29492105 DOI: 10.1186/s13068-018-1050-y Aikawa, S., Izumi, Y., Matsuda, F., Hasunuma, T., Chang, J.-S., Kondo, A. 2012 Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply. Bioresour. Technol., 108, 211-215. Keywords: Arthrospira platensis; Glycogen; Cyanobacteria; Light intensity; Nitrogen starvation Strain(s): 39  PubMed: 22277210 DOI: 10.1016/j.biortech.2012.01.004 Aikawa, S., Joseph, A., Yamada, R., Izumi, Y., Yamagishi, T., Matsuda, F., Kawai, H., Chang, J.-S., Hasunuma, T., Kondo, A. 2013 Direct conversion of Spirulina to ethanol without pretreatment or enzymatic hydrolysis processes. Energ. Environ. Sci., 6, 1844-1849. Strain(s): 39  DOI: 10.1039/C3EE40305J Aizawa, K. & Miyachi, S. 1986 Carbonic anhydrase and CO2 concentrating mechanisms in microalgae and cyanobacteria. FEMS Microbiol. Lett., 39, 215-233. Keywords: aquatic algae; cyanobacteria; photoautotrophs; photorespiration; photosynthesis; transport Strain(s): 2093,  2160,  2173,  2235  DOI: 10.1111/j.1574-6968.1986.tb01860.x Aizawa, K., Nakamura, Y., Miyachi, S. 1985 Variation of phosphoenolpyruvate carboxylase activity in Dunaliella associated with changes in atmospheric CO2 concentration. Plant Cell Physiol., 26, 1199-1203. Keywords: carbonic anhydrase; Dunaliella; phosphoenolpyruvate carboxylase; photosynthesis; Porphyridium Strain(s): 2138  DOI: 10.1093/oxfordjournals.pcp.a077016 Aizawa, K., Tsuzuki, M., Miyachi, S. 1986 Kinetic studies on fhe active species of inorganic carbon absorbed by the cells of Dunaliella tertiolecta. Plant Cell Physiol., 27, 37-47. Keywords: bicarbonate utilization; carbon dioxide; carbonic anhydrase; cell surface; Dunaliella tertiolecta; photosynthesis Strain(s): 2170  Akao, S., Hosoi, Y., Fujiwara, T. 2014 Utilization of water chestnut for reclamation of water environment and control of cyanobacterial blooms. Environ. Sci. Pollut. Res., 21, 2249-2255. Keywords: Nitrogen; Phosphorus; Phenolic compounds; Potassium; Trapa natans Strain(s): 87  PubMed: 24046225 DOI: 10.1007/s11356-013-2102-2 Akatsuka, S., Sekimoto, H., Iwai, H., Fukumoto, R., Fujii, T. 2003 Mucilage secretion regulated by sex pheromones in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 44, 1081-1087. Keywords: Closterium; mucilage; sex pheromone; sexual reproduction Strain(s): 67,  68  DOI: 10.1093/pcp/pcg131 Akatsuka, S., Tsuchikane, Y., Fukumoto, R., Fujii, T., Sekimoto, H. 2006 Physiological characterization of the sex pheromone protoplast-release-inducing protein from the Closterium peracerosum-strigosum-littorale complex (Charophyta). Phycol. Res., 54, 116-121. Keywords: Closterium; conjugation; mucilage; protoplast release; sex pheromone; sexual reproduction Strain(s): 67,  68  DOI: 10.1111/j.1440-1835.2006.00418.x Akcaalan, R., Young, FM., Metcalf, JS., Morrison, LF., Albay, M., Codd, GA. 2006 Microcystin analysis in single filaments of Planktothrix spp. in laboratory cultures and environmental blooms. Water Res., 40, 1583-1590. Keywords: Planktothrix rubescens; Planktothrix agardhii; Microcystin immunoassay; Single filaments; Cyanobacteria Strain(s): 595  DOI: 10.1016/j.watres.2006.02.020 Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2020 Anaerobic digestion effluent treatment using microalgae and nitrifiers in an outdoor raceway pond with fluidized carriers. Water Sci. Technol., 82, 1081–1091. Keywords: high-ammonia-containing wastewater; immobilization; light-stress; microalgal-bacterial consortia; nitrification; photo-oxygenation Strain(s): 2173  DOI: 10.2166/wst.2020.226 Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2021 Nitrification of anaerobic digestate using a consortium of microalgae and nitrifiers in an open photobioreactor with moving bed carriers. Chemosphere, 263, 127948 (article ID). Keywords: Bacterial immobilization; light attenuation; light stress; high-ammonia wastewater; photo-oxygenation Strain(s): 2173  PubMed: 33297018 DOI: 10.1016/j.chemosphere.2020.127948 Akizuki, S., Kishi, M., Cuevas-Rodríguez, G., Toda, T. 2020 Effects of different light conditions on ammonium removal in a consortium of microalgae and partial nitrifying granules. Water Res., 171, 115445 (article ID). Keywords: Energy-saving process; Photo-oxygenation; Short-cut nitrogen removal; Ammonium removal pathway; Empirical model Strain(s): 2173  PubMed: 31954203 DOI: 10.1016/j.watres.2019.115445 Aktas, T. S., Fujibayashi, M., Takeda, F., Maruo, C., Nishimura, O. 2014 The role of rapid mixing condition on picophytoplankton floc growth. Desalin. Water Treat., 52, 1404-1413. Keywords: Velocity gradient; Rapid mixing time; Picophytoplankton; Floc formation and breakage; Turbidity removal Strain(s): 1348  DOI: 10.1080/19443994.2013.787951 Aktas, T. S., Takeda, F., Maruo, C., Chiba, N., Nishimura, O. 2012 A comparison of zeta potentials and coagulation behaviors of cyanobacteria amd algae. Desalin. Water Treat., 48, 294-301. Keywords: Zeta potential; Coagulation; Turbidity; Cyanobacteria; algae Strain(s): 87,  1348,  2170  DOI: 10.1080/19443994.2012.698828 Alamsjah, M. A., Hirao, S., Ishibashi, F., Fujita , Y. 2005 Isolation and structure determination of algicidal compounds from Ulva fasciata. Biosci. Biotechnol. Biochem., 69, 2186-2192. Keywords: algicidal compounds; Ulva fasciata; hexadeca-4,7,10,13-tetraenoic acid; octadeca-6,9,12,15-tetraenoic acid; α-linolenic acid Strain(s): 15,  462  PubMed: 16306701 DOI: 10.1271/bbb.69.2186 Alamsjah, M. A., Hirao, S., Ishibashi, F., Oda, T., Fujita, Y. 2008 Algicidal activity of polyunsaturated fatty acids derived from Ulva fasciata and U. pertusa (Ulvaceae, Chlorophyta) on phytoplankton. J. Appl. Phycol., 20, 713-720. Keywords: Algicidal compound; Red tide phytoplankton; Ulva fasciata; Ulva pertusa Strain(s): 1,  3,  7,  221,  251,  252,  254,  359,  381,  462,  486  DOI: 10.1007/s10811-007-9257-5 Alamsjah, M. A., Ishibe, K., Kim, D., Yamaguchi, K., Ishibashi, F., Fujita, Y., Oda, T. 2007 Selective toxic effects of polyunsaturated fatty acids derived from Ulva fasciata on red tide phytoplankter species. Biosci. Biotechnol. Biochem., 71, 265-268. Keywords: α-linolenic acid; linoleic acid; Ulva fasciata; red tide phytoplankter Strain(s): 3  PubMed: 17213644 DOI: 10.1271/bbb.60475 Al-Azab, A. J. S., Widyaningrum, D., Hirakawa, H., Hayashi, Y., Tanaka, S., Ohama, T. 2021 A resin cyanoacrylate nanoparticle as an acute cell death inducer to broad spectrum of microalgae. Algal Res., 54, 102191 (article ID). Keywords: Cell death; Coccolith; Non-green algae; ROS; Poly (isobutylcyanoacrylate) nanoparticles Strain(s): 1,  5,  7,  15,  274,  331,  534,  590,  615,  699,  712,  900,  1017,  1308,  1310,  2764,  2778  DOI: 10.1016/j.algal.2021.102191 Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B. 2019 Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria. Extremophiles, 23, 635–647. Keywords: Fischerella: Mastigocladus: Distribution: Thermophile: Nitrogen fxation: Photosynthesis: Multicellularity: Hot springs Strain(s): 592,  3754,  4106  PubMed: 31512055 DOI: 10.1007/s00792-019-01125-4 Alghanimy, D. B. G. & Alghanmi, H. A. 2021 Effect of different magnesium oxide nanoparticles concentration on the growth of the Lyngbya majuscula. Eco. Env. & Cons., 27, 690-694. Keywords: Nanoparticles; MgO NPs; Lyngbya majuscula; Chlorophyll a; Carotenoids Strain(s): 46  Allen, M. B. 1959 Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte. Arch. Mikrobiol., 32, 270-277. Strain(s): 298  DOI: 10.1007/BF00409348 Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017 Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species. Algal Res., 21, 191-202. Keywords: Astaxanthin productivity; Haematococcus pluvialis; Haematococcus rubicundus; Functional traits; Common-garden experiment; Intraspecific variation Strain(s): 144  DOI: 10.1016/j.algal.2016.10.021 Almeida, A. V. M., Vaz, M. G. M. V., de Castro, N. V., Genuário, D. B., Oder, J. C., de Souza, P. A. M., Martins, S. B., Machado, M., Nunes-Nesi, A., Araújo, W. L. 2023 How diverse a genus can be: An integrated multi-layered analysis into Desmonostoc (Nostocaceae, Cyanobacteriota). Syst. Appl. Microbiol., 46, 126422 (article ID). Keywords: Diversity; Growth; Metabolism; Nif genes; Physiology; Phylogeny Strain(s): 25,  28,  2094,  2107  PubMed: 37119668 DOI: 10.1016/j.syapm.2023.126422 Altenburger, R., Schmitt-Jansen, M., Riedl, J. 2008 Bioassays with unicellular algae: deviations from exponential growth and its implications for toxicity test results. J. Environ. Qual., 37, 16-21. Strain(s): 4282  PubMed: 18178874 DOI: 10.2134/jeq2006.0556 Alvarenga, D. O., Andreote, A. P. D., Branco, L. H. Z., Delbaje, E., Cruz, R. B., Varani, A. D., Fiore, M. F. 2021 Amazonocrinis nigriterrae gen. nov., sp. nov., Atlanticothrix silvestris gen. nov., sp. nov. and Dendronalium phyllosphericum gen. nov., sp. nov., nostocacean cyanobacteria from Brazilian environments. Int. J. Syst. Evol. Microbiol., 71, 004811 (article ID). Keywords: Nostocaceae; phyllosphere; anthropogenic dark earth; nitrogen fixation; phylogenomics Strain(s): 4103  PubMed: 34032563 DOI: 10.1099/ijsem.0.004811 Anam, K., Rahman, D. Y., Hidhayati, N., Rachmayati, R., Susilaningsih, D., Agustini, N. W. S., Praharyawan, S., Susanti, H., Apriastini, M. 2021 Lipid accumulation on optimized condition through biomass production in green algae. IOP Conf. Ser.: Earth Environ. Sci., 762, 012075 (article ID). Strain(s): 2152,  2169,  2170  DOI: 10.1088/1755-1315/762/1/012075 Anas, A. R. J., Nakajima, A., Naruse, C., Tone, M., Asukabe, H., Harada, K. 2016 Determination of fVIIa-sTF inhibitors in toxic Microcystis cyanobacteria by LC-MS technique. Mar. Drugs, 14, 7 (article ID). Keywords: cyanobacteria; toxic Microcystis; anticoagulant; fVIIa-sTF inhibitors; peptides; aeruginosins; blood coagulation cascade Strain(s): 89,  102,  103,  107,  298,  1025,  1043,  1058,  1071,  1085,  1099,  1133  PubMed: 26729138 DOI: 10.3390/md14010007 Andemichael, H., Lee, J. W. 2016 Toxicological study of biofuel ethanol with blue green alga Spirulina platensis. Algal Res., 18, 110-115. Keywords: Spirulina platensis; Biofuel ethanol; Cyanobacteria; Ethanol tolerance bioassay; Biofuel ethanol toxicological effect Strain(s): 39  DOI: 10.1016/j.algal.2016.05.032 Ando, D., Fujisawa, T., Katagi, T. 2017 Fate of flumioxazin in aquatic plants: Two algae (Pseudokirchneriella subcapitata, Synechococcus sp.), duckweed (Lemna sp.), and water milfoil (Myriophyllum elatinoides). J. Agric. Food Chem., 65, 8813-8822. Keywords: aquatic plants; conjugation; flumioxazin; metabolism; sediment exposure; water exposure Strain(s): 35,  937  PubMed: 28920683 DOI: 10.1021/acs.jafc.7b03355 Ando, T., Nagase, H., Eguchi, K., Hirooka, T., Nakamura, T., Miyamoto, K., Hirata, K. 2007 A novel method using cyanobacteria for ecotoxicity test of veterinary antimicrobial agents. Environ. Toxicol. Chem., 26, 601-606. Keywords: Antimicrobial agent; Cyanobacterium; Ecotoxicity test; Algal toxicity Strain(s): 19,  23,  44,  107,  3277  PubMed: 17447543 DOI: 10.1897/06-195R.1 Ando, T., Otsuka, S., Nishiyama, M., Sendo, K., Watanabe, M. M., Matsumoto, S. 2003 Toxic effects of dichloromethane and trichloroethlene on the growth of planktonic green algae, Chlorella vulgaris NIES227, Selenastrum capricornutum NIES35, and Volvulina steinii NIES545. Microbes Environ., 18, 43-46. Keywords: algal growth potential (AGP); bioindicator; dichloromethane; organic solvents; trichloroethlene Strain(s): 35,  227,  545  DOI: 10.1264/jsme2.18.43 Annoura, T., Nara, T., Makiuchi, T., Hashimoto, T., Aoki, T. 2005 The origin of dihydroorotate dehydrogenase genes of kinetoplastids, with special reference to their biological significance and adaptation to anaerobic, parasitic conditions. J. Mol. Evol., 60, 113-127. Keywords: Dihydroorotate dehydrogenase; Trypanosoma cruzi Bodonid; Kinetoplastid; Euglenozoa; Phylogenetic tree; Gene fusion; Horizontal gene transfer; Anaerobiosis Strain(s): 48  PubMed: 15696374 DOI: 10.1007/s00239-004-0078-8 Antonaru, L. A., Cardona, T., Larkum, A. W. D., Nürnberg, D. J. 2020 Global distribution of a chlorophyll f cyanobacterial marker. ISME J., 14, 2275–2287. Strain(s): 267,  593,  3974  PubMed: 32457503 DOI: 10.1038/s41396-020-0670-y Antonaru, L. A., Nurnberg, D. J. 2017 Role of PatS and cell type on the heterocyst spacing pattern in a filamentous branching cyanobacterium. FEMS Mircobiol. Lett., 364 fnx154 (article ID). Keywords: multicellularity; cyanobacteria; Stigonematales; cell differentiation; nitrogen fixation; heterocyst spacing pattern; PatS Strain(s): 592,  3754,  3756  PubMed: 28859320 DOI: 10.1093/femsle/fnx154 Antoshvili, M. Caspy, I., Hippler, M., Nelson, N. 2019 Structure and function of photosystem I in Cyanidioschyzon merolae. Photosynth. Res., 139, 499-508. Keywords: Photosynthesis; Photosystem I; Crystal structure; Synechocystis; Cyanobacteria; Membrane complexes Strain(s): 1084  PubMed: 29582227 DOI: 10.1007/s11120-018-0501-4 Aoi, J., Sasaki, D., Asayama, M. 2021 Development of a method for phycocyanin recovery from filamentous cyanobacteria and evaluation of its stability and antioxidant capacity. BMC Biotechnol., 21, 40 (article ID). Keywords: Antioxidant; Arthrospira platensis; Cell lysis; Limnothrix sp., Phycocyanin; Pseudanabaena sp. Strain(s): 39  PubMed: 34134665 DOI: 10.1186/s12896-021-00692-9 Aoki, S. & Miyachi, S. 1964 Chromatographic analysis of acid-soluble polyphosphates in Chlorella cells. Plant Cell Physiol., 5, 241-250. Strain(s): 2170  Aoki, S., Ohara, S., Kimura, K., Mizuguchi, H., Fuse, Y., Yamada, E. 2008 Characterization of dissolved organic matter released from Microcystis aeruginosa. Anal. Sci., 24, 389-394. Strain(s): 109  PubMed: 18332548 DOI: 10.2116/analsci.24.389 Aoki, S., Ohara, S., Kimura, K., Mizuguchi, H., Fuse, Y., Yamada, E. 2008 Characterization of fluorophores released from three kinds of lake phytoplankton using gel chromatography and fluorescence spectrophotometry. Anal. Sci., 24, 1461-1467. Strain(s): 109,  275,  665  PubMed: 18997376 DOI: 10.2116/analsci.24.1461 Aoshima, J., Kubota, M., Nishimura, T., Iwamura, T. 1984 DNA polymerases of Chlorella. II. Characterization to distinguish the two enzymes. J. Biochem., 96, 461-473. Strain(s): 2170  Aoshima, J., Nishimura, T., Iwamura, T. 1982 DNA polymerases of Chlorella. I. Chloroplastic and nuclear DNA polymerases in synchronized algal cells. Cell Struct. Funct., 7, 327-340. Strain(s): 2170  Aoyama, K., Iwahori, K., Miyata, N. 2003 Application of Euglena gracilis cells to comet assay: evaluation of DNA damage and repair. Mutat. Res. Genet. Toxicol. Environ. , 538, 155-162. Keywords: Comet assay; Single-cell gel electrophoresis; Euglena gracilis; DNA damage; DNA repair Strain(s): 49  DOI: 10.1016/S1383-5718(03)00113-X Aoyama, K., Miyata, N., Iwahori, K. 2005 Evalution of DNA damaging potential in landfill leachates by comet assay using Euglena gracilis. Jpn. J. Water Treat. Biol., 41, 73-81. Keywords: comet assay; Euglena gracilis; landfill leachate; umu test Strain(s): 49  DOI: 10.2521/jswtb.41.73 Aoyama, K., Uemura, I., Miyake, J., Asada, Y. 1997 Fermentative metabolism to produce hydrogen gas and organic compounds in a cyanobacterium, Spirulina platensis. J. Ferment. Bioeng., 83, 17-20. Keywords: Spirulina; hydrogen; organic acid; ethanol Strain(s): 46  DOI: 10.1016/S0922-338X(97)87320-5 Arai, S., Takahashi, H. , Takano, H. , Sakai, A., Kawano, S. 1998 Isolation, characterization, and chromosome mapping of an actin gene from the primitive green alga, Nannochloris bacillaris (Chlorophyceae). J. Phycol., 34, 477–485. Keywords: actin gene; actin localization; cell division; karyotype; Nannochloris bacillaris Strain(s): 4016  PubMed: 8575024 DOI: 10.1046/j.1529-8817.1998.340477.x Araie, H., Nakamura, H., Toney, J. L., Haigg, H. A., Plancq, J., Shiratori, T., Leavitt, P. R., Seki, O., Ishida, K-I., Sawada, K., Suzuki, I., Shiraiwa, Y. 2018 Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates. Org. Geochem., 121, 89-103. Keywords: Alkenones; Alkenone unsaturation index; Canadian salt lakes; Chemotaxonomy; Haptophytes; Isochrysis; Long-chain alkyl ketones; Paleothermometer; UK37 Strain(s): 4331,  4332,  4333,  4334,  4335  DOI: 10.1016/j.orggeochem.2018.04.008 Araie, H., Sakamoto, K., Suzuki, I., Shiraiwa, Y. 2011 Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta). Plant Cell Physiol., 52, 1204-1210. Strain(s): 837  PubMed: 21632656 DOI: 10.1093/pcp/pcr070 Arakaki, Y., Fujiwara, T., Kawai-Toyooka, H., Kawafune, K., Featherston, J., Durand, P. M., Miyagishima, S., Nozaki, H. 2017 Evolution of cytokinesis-related protein localization during the emergence of multicellularity in volvocine green algae. BMC Evol. Biol., 17, 243 (article ID). Keywords: Multicellularity; Volvocine algae; Tetrabaena socialis; DRP1 Strain(s): 571,  4121  PubMed: 29212441 DOI: 10.1186/s12862-017-1091-z Arakaki, Y., Kawai-Toyooka, H., Hamamura, Y., Higashiyama, T., Noga, A., Hirono, M., Olson, B. J. S. C., Nozaki, H. 2013 The simplest integrated multicellular organism unveiled. PLoS One, 8, e81641 (article ID). Strain(s): 571  PubMed: 24349103 DOI: 10.1371/journal.pone.0081641 Archibald, P. A. 1975 Trebouxia de Pulmaly (Chlorophyceae, Chlorococcales) and Pseudotrebouxia gen. nov. (Chlorophyceae, Chlorosarcinales). Phycologia, 14, 125-137. Strain(s): 2183,  2185,  2186,  2187,  2188  DOI: 10.2216/i0031-8884-14-3-125.1 Arii, S., Yamashita, R., Tsuji, K., Tomita, K., Hasegawa, M., Bober, B., Harada, K. 2021 Differences in susceptibility of cyanobacteria species to lytic volatile organic compounds and influence on seasonal succession. Chemosphere, 284, 131378 (article ID). Keywords: Susceptibility; Volatile organic compounds (VOCs); β-Cyclocitral; Minimal inhibitory concentration (MIC); Seasonal succession Strain(s): 102,  112,  298,  808,  843,  1642,  1652,  1677,  1696,  1728  PubMed: 34217930 DOI: 10.1016/j.chemosphere.2021.131378 Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Kinoshita, E., Suzaki, T. 2002 Ca2+-dependent cytoplasmic contractility of the heliozoan Actinophrys sol. Eur. J. Protistol., 38, 365-372. Keywords: Cell model; Permeabilization; Contractile tubules; Heliozoa; Protozoa Strain(s): 2497  DOI: 10.1078/0932-4739-00879 Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2005 Ca2+-dependent nuclear contraction of heliozoan Actinophrys sol. Cell Calcium, 38, 447-455. Strain(s): 2497  PubMed: 16099499 DOI: 10.1016/j.ceca.2005.06.034 Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Ca2+-dependent in vivo contractility of a precipitate isolated from an extract of the heliozoan Actinophrys sol. Cell Motil. Cytoskeleton, 63, 57-65. Keywords: contraction; precipitate; heliozoan; protozoa Strain(s): 2497  PubMed: 16362955 DOI: 10.1002/cm.20106 Arima, H., Horiguchi, N., Takaichi, S., Kofuji, R., Ishida, K-I., Wada, K., Sakamoto, T. 2012 Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species. FEMS Microbiol. Ecol., 79, 34-45. Keywords: Anhydrobiosis; carotenoid; ferredoxin-NADP; oxidoreductase; nitrate/nitrite transporter; random amplified polymorphic DNA; water stress protein Strain(s): 24,  28,  2107,  2108,  2538,  2539  PubMed: 22066798 DOI: 10.1111/j.1574-6941.2011.01195.x Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967. Strain(s): 25,  73,  267,  2100,  2107,  2109,  2111,  2130,  3755,  3756,  3757,  3974,  4073,  4102,  4103,  4105,  4106  PubMed: 37603862 DOI: 10.1021/acschembio.3c00112 Aruga, Y. 1965 Ecological studies of photo-synthesis and matter production of phytoplankton II. Photosynthesis of algae in relation to light intensity and temperature. Bot. Mag. Tokyo, 78, 360-365. Strain(s): 19  Asada, C., Doi, K., Sasaki, C., Nakamura, Y. 2012 Efficient extraction of starch from microalgae using ultrasonic homogenizer and its conversion into ethanol by simultaneous saccharification and fermentation. Natural Resources, 3, 175-179 Keywords: Bioethanol; Microalgae; Ultrasonic Treatment; Homoginizer; Starch Strain(s): 437  DOI: 10.4236/nr.2012.34023 Asada, Y. & Kawamura, S. 1986 Screening for cyanobacteria that evolve molecular hydrogen under dark and anaerobic conditions. J. Ferment. Technol., 64, 553-556. Strain(s): 19,  21,  23,  36,  39,  46,  2119,  3277  DOI: 10.1016/0385-6380(86)90081-6 Asada, Y., Kawamura, S., Ho, K.-K. 1987 Hydrogenase from the unicellular cyano-bacterium, Microcystis aeruginosa. Phytochemistry, 26, 637-640. Keywords: Microcystis aeruginosa; cyanobacterium; hydrogenase; purification; properties Strain(s): 44  DOI: 10.1016/S0031-9422(00)84756-1 Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1998 Chemiluminescence flow-injection system for rapid detection of red tide phytoplankton, Chattonella antiqua. Anal. Lett., 31, 2279-2288. Keywords: chemiluminescence; flow injection; superoxide; luciferin analogue; red tide Strain(s): 113  DOI: 10.1080/00032719808005302 Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1999 Highly sensitive chemiluminescence flow-injection detection of the red tide phytoplankton Heterosigma carterae. Anal. Chim. Acta, 390, 237-244. Keywords: Chemiluminescence; Flow injection analysis; Red tide phytoplankton; Superoxide; Hydrogen peroxide; Heterosigma carterae Strain(s): 6,  586  DOI: 10.1016/S0003-2670(99)00145-2 Asai, R., Ootani, K., Nomura, Y., Nakamura, C., Ikebukuro, K., Arikawa, Y., Miyake, J., Karube, I. 2003 PCR-based ribosomal DNA detection technique for microalga (Heterosigma carterae) causing red tide and its application to a biosensor using labeled probe. Mar. Biotechnol., 5, 417-423. Keywords: small subunit rDNA; Heterosigma carterae; fluorescence polarization; asymmetric polymerase chain reaction; surface plasmon resonance Strain(s): 1,  44  PubMed: 14730424 DOI: 10.1007/s10126-002-0081-2 Asamizu, E., Miura, K., Kucho, K., Inoue, Y., Fukuzawa, H., Ohyama, K., Nakamura, Y., Tabata, S. 2000 Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii. DNA Res., 7, 305-307. Keywords: Chlamydomonas reinhardtii; cDNA; EST; CO2 stress Strain(s): 2235  PubMed: 11089912 DOI: 10.1093/dnares/7.5.305 Asamizu, E., Nakamura, Y., Miura, K., Fukuzawa, H., Fujiwara, S., Hirono, M., Iwamoto, K., Matsuda, Y., Minagawa, J., Shimogawara, K., Takahashi, Y., Tabata, S. 2004 Establishment of publicly available cDNA material and information resource of Chlamydomonas reinhardtii (Chlorophyta), to facilitate gene function analysis. Phycologia, 43, 722-726. Strain(s): 2235  DOI: 10.2216/i0031-8884-43-6-722.1 Asamizu, E., Nakamura, Y., Sato, S., Fukuzawa, H., Tabata, S. 1999 A large scale structure analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags. DNA Res., 6, 369-373. Keywords: green alga; Chlamydomonas reinhardtii; cDNA; EST; normalized library; similarity search Strain(s): 2235  PubMed: 10691129 DOI: 10.1093/dnares/6.6.369 Aso, M., Matsumae, R., Tanaka, A., Tanaka, R., Takabayashi, A. 2021 Unique peripheral antennas in the photosystems of the streptophyte alga Mesostigma viride. Plant Cell Physiol., 62, 436–446. Keywords: Green algae; Iso-seq; Mesostigma viride; Native-PAGE; Photosystem Strain(s): 296  PubMed: 33416834 DOI: 10.1093/pcp/pcaa172 Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578. Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling Strain(s): 27,  39,  42,  73,  81,  87,  89,  100,  101,  102,  103,  104,  105,  107,  111,  112,  207,  208,  230,  266,  298,  416,  433,  478,  510,  512,  515,  592,  593,  604,  611,  808,  809,  835,  843,  846,  847,  905,  928,  931,  932,  945,  981,  989,  1025,  1043,  1058,  1061,  1064,  1068,  1069,  1071,  1076,  1085,  1099,  1101,  1105,  1113,  1115,  1126,  1133,  1134,  1135,  1144,  1157,  1215,  1642,  1643,  1652,  1668,  1672,  1673,  1677,  1678,  1698,  2087,  2131,  2412,  2665,  3708,  3733,  3734,  3736,  3755,  3756,  3757  PubMed: 32501712 DOI: 10.1021/jasms.0c00148 Azaman, S. N. A., Wong, D. C. J., Tan, S. W., Yusoff, F. M., Nagao, N., Yeap, S. K. 2020 De novo transcriptome analysis of Chlorella sorokiniana: effect of glucose assimilation, and moderate light intensity. Sci Rep, 10, 17331 (article ID). Strain(s): 2168  PubMed: 33060668 DOI: 10.1038/s41598-020-74410-4 Azizi, M., Moteshafi, H., Hashemi, M. 2020 A novel CO2 steady feeding based on the pH steady strategy data in the Haematococcus pluvialis cultivation to maximize the cell growth and carbon bio-sequestration. Bioresour. Technol., 314, 123752 (article ID). Keywords: Haematococcus pluvialis; CO2 feeding; Productivity; CO2 bio-fixation; RuBisCO activity Strain(s): 144  PubMed: 32629377 DOI: 10.1016/j.biortech.2020.123752 Azizi, M., Moteshafi, H., Hashemi, M. 2020 Distinctive nutrient designs using statistical approach coupled with light feeding strategy to improve the Haematococcus pluvialis growth performance and astaxanthin accumulation. Bioresour. Technol., 300, 122594 (article ID). Keywords: H. pluvialis; Astaxanthin; Nutrients designing; Optimization; Light-feeding strategy Strain(s): 144  PubMed: 31901774 DOI: 10.1016/j.biortech.2019.122594 Azuma, T., Pánek, T., Tice, A. K., Kayama, M., Kobayashi, M., Miyashita, H., Suzaki, T., Yabuki, A., Brown, M. W., Kamikawa, R. 2022 An enigmatic stramenopile sheds light on early evolution in Ochrophyta plastid organellogenesis. Mol. Biol. Evol., 39, msac065 (article ID). Keywords: Actinophryidae; plastid evolution; aminoacyl-tRNA synthase; gene transfer; phylogenomics; organellar DNA Strain(s): 2497,  3374  PubMed: 35348760 DOI: 10.1093/molbev/msac065 Bae, E. H., Kang, J.-H., Park, C.-S. 2020 New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae). Journal of Species Research, 9, 210-217. Keywords: 16S rRNA; Microseira wollei; morphology; unrecorded Strain(s): 4236  DOI: 10.12651/JSR.2020.9.3.210 Baker, J. A., Entsch, B., McKay, D. B. 2003 The cyanobiont in an Azolla fern is neither Anabaena nor Nostoc. FEMS Mircobiol. Lett., 229, 43-47. Keywords: Azolla fern; Cyanobacterial symbiont; Phylogenetic relationship Strain(s): 40,  80  PubMed: 14659541 DOI: 10.1016/S0378-1097(03)00784-5 Baldia, S. F., Fukami, K., Nishijima, T., Hata, T. 1995 Growth responses of Spirulina platensis to some physico-chemical factors and the kinetics of phosphorus utilization. Fish. Sci., 61, 331-335. Keywords: Spirulina platensis; growth kinetics; physico-chemical factors; organic phosphorus; waste water Strain(s): 46  DOI: 10.2331/fishsci.61.331 Baldia, S. F., Nishijima, T., Fukami, K., Hata, Y. 1994 Studies on the chemical composition of a cyanophyte, Spirulina platensis. In The Third Asian Fisheries Forum, Eds. by Chou, L. M., et al., Asian Fisheries Society, Manila, Philippines, 1994, pp. 940-943. Strain(s): 46  Balloo, N., Mehjabin, J. J., Phan, C.-S., Okino, T. 2023 Heat shock and iron limitation modulate the metabolic profile of the cyanobacterium Microcystis aeruginosa NIES-88. Phycol. Res., 71, 200-208. Strain(s): 88  DOI: 10.1111/pre.12529 Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID). Strain(s): 2565,  3699,  3700,  3701  PubMed: 37420035 DOI: 10.1038/s42003-023-05002-x Ban, S. 1992 Effects of photoperiod, temperature, and population density on induction of diapause egg production in Eurytemora affinis (Copepoda: Calanoida) in Lake Ohnuma, Hokkaido, Japan. J. Crustacean Biol., 12, 361-367. Keywords: Eggs; Diapause; Female animals; Photoperiod; Nauplii; Egg production; Lakes; Population density; Autumn; Animals Strain(s): 282,  2235  DOI: 10.2307/1549029 Ban, S. 1994 Effect of temperature and food concentration on post-embryonic development, egg production and adult body size of calanoid copepod Eurytemora affinis. J. Plankton Res., 16, 721-735. Strain(s): 282  DOI: 10.1093/plankt/16.6.721 Ban, S. & Minoda, T. 1994 Induction of diapause egg production in Eurytemora affinis by their own metabolites. Hydrobiologia, 292/293, 185-189. Keywords: crowding effect; metabolites; diapause induction; Eurytemora affinis Strain(s): 282  DOI: 10.1007/978-94-017-1347-4_25 Baqué, M., Napoli, A., Fagliarone, C., Moeller, R., de Vera, J. P., Billi, D. 2020 Carotenoid raman signatures are better preserved in dried cells of the desert cyanobacterium Chroococcidiopsis than in hydrated counterparts after high-dose gamma irradiation. Life-Basel, 10, 83 (article ID). Keywords: biosignatures; extremophiles; ionizing radiation; Raman spectroscopy; cyanobacteria; Mars exploration Strain(s): 25,  2100,  4073,  4103,  4105  PubMed: 32521820 DOI: 10.3390/life10060083 Barbier, G., Oesterhelt, C., Larson, M. D., Halgren, R. H., Wilkerson, C., Garavito, R. M., Benning, C., Weber, A. P. M. 2005 Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae. Plant Physiol., 137, 460-474. Strain(s): 3638  PubMed: 15710685 DOI: 10.1104/pp.104.051169 Barcytė, D., Eikrem, W., Engesmo, A., Seoane, S., Wohlmann, J., Horák, A., Yurchenko, T., Eliáš, M. 2021 Olisthodiscus represents a new class of Ochrophyta. J. Phycol., 57, 1094-1118. Strain(s): 15  PubMed: 33655496 DOI: 10.1111/jpy.13155 Barcytė, D., Pusztai, M., Škaloud, P., Eliáš, M. 2022 When you like other algae: Adglutina synurophila gen. et sp. nov. (Moewusinia, Chlorophyceae), a clingy green microalga associated with Synura colonies. Protist, 173, 125858 (article ID). Keywords: Diversity; epibionts; green algae; taxonomy; Volvocales Strain(s): 2225,  2499  PubMed: 35220204 DOI: 10.1016/j.protis.2022.125858 Baresova, M., Pivokonsky, M., Novotna, K., Naceradska, J., Branyik, T. 2017 An application of cellular organic matter to coagulation of cyanobacterial cells (Merismopedia tenuissima). Water Res., 122, 70-77. Keywords: Algal cellular organic matter; Coagulation; Cyanobacterial cells; Merismopedia tenuissima; Water treatment Strain(s): 230  PubMed: 28591663 DOI: 10.1016/j.watres.2017.05.070 Bass, D., Howe, A. T., Mylnikov, A. P., Vickerman, K., Chao, E. E., Smallbone, J. E., Snell, J., Cabral Jr., C., Cavalier-Smith, T. 2009 Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.. Protist, 160, 483-521. Keywords: Cercomonas; Eocercomonas; Paracercomonas; Cavernomonas; 18S rDNA phylogeny; Agitata Strain(s): 2434,  2435,  2436,  2437,  2438,  2439,  2440,  2441,  2442,  2443,  2444,  2445,  2449,  2450,  2451,  2452,  2453,  2454  PubMed: 19589724 DOI: 10.1016/j.protis.2009.01.004 Batista, A. M. M., Woodhouse, J. N., Grossart, H.-P., Giani, A. 2019 Methanogenic archaea associated to Microcystis sp. in field samples and in culture. Hydrobiologia, 831, 1–4. Keywords: Cyanobacteria; Methanogenic archaea; Bacterial community composition; Microcystis sp.; Tropical reservoir Strain(s): 101,  102,  1114  DOI: 10.1007/s10750-018-3655-3 Becker, B. & Melkonian, M. 1991 2-keto-sugar acids in green flagellates: A chemical marker for prasinophycean scales. J. Phycol., 27, 498-504. Keywords: cell wall composition; Chlorophyta; 2-keto-sugar acids; Prasinophyceae; scale composition Strain(s): 2253  DOI: 10.1111/j.0022-3646.1991.00498.x Belmans, D. & Laere, A. V. 1988 Effect of ionophores on the ATP-pool and glycerol content in cells of the halotolerant green alga Dunaliella tertiolecta. J. Gen. Microbiol., 134, 2261-2268. Strain(s): 2258  DOI: 10.1099/00221287-134-8-2261 Beltran, E. C., Neilan, B. 2000 Geographical segregation of the neurotoxin-producing cyanobacterium Anabaena circinalis. Appl. Environ. Microbiol., 66, 4468-4474. Strain(s): 19,  21,  23,  40,  41,  80  PubMed: 11010900 DOI: 10.1128/AEM.66.10.4468-4474.2000 Bendif, E. M., Probert, I., Carmichael, M., Romac, S., Hagino, K., de Vardas, C. 2014 Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huzleyi and Gephyrocapsa. J. Phycol., 50, 140-148. Keywords: coccolithophore; DNA barcoding; Emiliania huxleyi; Gephyrocapsa oceanica; phylogeny; species complex Strain(s): 1000,  2697  PubMed: 26988015 DOI: 10.1111/jpy.12147 Beneragama, C. K., Chamara, R. M. S. R., Kumara, G. D. K., Goto, K. 2019 Intraspecific plasticity in circadian rhythms within Euglena gracilis Int. J. Appl. Sci. Biotechnol., 7, 207-216. Keywords: Euglena gracilis; Circadian rhythms; Intraspecific Plasticity Strain(s): 48  DOI: 10.3126/ijasbt.v7i2.24278 Benico, G., Takahashi, K., Lum, W. M., Iwataki, M. 2019 Morphological variation, ultrastructure, pigment composition and phylogeny of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae, Dinophyceae). Phycologia, 58, 405-418. Keywords: 19′-Hexanoyloxyfucoxanthin; Apical structure complex (ASC); Brachidinium; Chloroplast; Karenia; Karlodinium; Pyrenoid; Takayama Strain(s): 4329  DOI: 10.1080/00318884.2019.1601948 Benke, P. I., Vinay Kumar, M. C. S., Pan, D., Swarup, S. 2015 A mass spectrometry-based unique fragment approach for the identification of microcystins. Analyst, 140, 1198-1206. Strain(s): 843  PubMed: 25525642 DOI: 10.1039/c4an01702a Berge, T., Daugbjerg, N., Hansen, P. J. 2012 Isolation and cultivation of microalgae select for low growth rate and tolerance to high pH. Harmful Algae, 20, 101-110. Keywords: Culture; Growth rates; Harmful algal blooms; Heterocapsa triquetra; Interspecific variation; Laboratory selection; pH; Phytoplankton; Species; Strains Strain(s): 7,  235  DOI: 10.1016/j.hal.2012.08.006 Berney, C., Geisen, S., Van Wichelen, J., Nitsche, F., Vanormelingen, P., Bonkowski, M., Bass, D. 2015 Expansion of the 'reticulosphere': diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist, 166, 271-295. Keywords: Network-forming amoebae; reticulate; Variosea; Amoebozoa; molecuar phylogeny; SSU rDNA Strain(s): 3722  PubMed: 25965302 DOI: 10.1016/j.protis.2015.04.001 Bertuzz, S., Gustavs, L., Pandolfini, G., Tretiac, M. 2017 Heat shock treatments for the control of lithobionts: A case study with epilithic green microalgae. Int. Biodeterior. Biodegrad., 123, 236-243. Keywords: Biocides; Biodeteriogens; Chlorophyll a fluorescence; Hydration; Polyols; Non-reducing sugars Strain(s): 2166  DOI: 10.1016/j.ibiod.2017.06.023 Bhattacharjee, S., Mishra, A. K. 2020 The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria. J. Exp. Bot., 71, 4639-4657. Keywords: Altruistic adaptation; caspase homologues; horizontal gene transfer; orthocaspases, PCD morphotypes; programmed cell death Strain(s): 843  DOI: 10.1093/jxb/eraa213 Bhattad, T., Koradiya, A., Prakash, G. 2021 Prebiotic activity of paramylon isolated from heterotrophically grown Euglena gracilis. Heliyon, 7, e07884 (article ID). Strain(s): 48  PubMed: 34584997 DOI: 10.1016/j.heliyon.2021.e07884 Bhuiyan, MAH., Faria, DG., Horiguchi, T., Sym, SD., Suda, S. 2015 Taxonomy and phylogeny of Pyramimonas vacuolata sp. nov. (Pyramimonadales, Chlorophyta). Phycologia, 54, 323–332. Keywords: 18S rDNA sequence; Morphology; Phylogeny; Pyramimonas; Pyramimonas vacuolata sp. nov.; rbcL; Taxonomy; Ultrastructure Strain(s): 3400  DOI: 10.2216/15-004.1 Bibby, T. S., Mary, I., Nield, J., Partensky, F., Barber, J. 2003 Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem. Nature, 424, 1051-1054. Strain(s): 2880,  2887  PubMed: 12944966 DOI: 10.1038/nature01933 Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souzade, C., Pinto, E., Hansen, P. J., Larsen, T. O., Varga, E. 2019 A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum. Harmful Algae, 81, 10-17. Keywords: Chemotaxonomy; Prymnesium parvum; ITS-sequencing; High resolution mass spectrometry; Prymnesin Strain(s): 1017,  1018,  1812  PubMed: 30638493 DOI: 10.1016/j.hal.2018.11.010 Blanc, G., Agarkova, I., Grimwood, J., Kou, A., Brueggeman, A., Dunigan, D. D., Gurnon, J., Ladunga, I., Lindquist, E., Lucas, S., Pangilinan, J., Proschold, T., Salamov, A., Schmutz, J., Weeks, D., Yamada, T., Lomsadze, A., Borodovsky, M., Claverie, J. M., Grigoriev, I. V., Van Etten, J. L. 2012 The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 13, R39 (article ID). 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Keywords: halogenase; cyanopeptolin; aeruginosin; DNA rearrangement; secondary peptide metabolite; chlorination; internal transcribed spacer; phylogeny Strain(s): 89,  98,  101,  102,  298  PubMed: 18614525 DOI: 10.1093/molbev/msn150 Canini, A., Civitareale, P., Marini, S., Grilli Caiola, M., Rotilio, G. 1992 Purification of iron superoxide dismutase from the cyano-bacterium Anabaena cylindrica Lemm. and localization of the enzyme in heterocysts by immunogold labeling. Planta, 187, 438-444. Keywords: Anabaena; heterocyst; iron-superoxide dismutase (immunogold labeling) Strain(s): 19  PubMed: 24178137 DOI: 10.1007/BF00199961 Cannell, R. J. P., Owsianka, A. M., Walker, J. M. 1988 Results of a large-scale screening programme to detect antibacterial activity from freshwater algae. Br. Phycol. J., 23, 41-44. Strain(s): 686,  2287  DOI: 10.1080/00071618800650051 Cao, H., Shimura, Y., Kawachi, M., Yin, Y. 2014 Draft genome sequence of the toxic bloom-forming cyanobacterium Aphanizomenon flos-aquae NIES-81. GenomeA, 2, e00044-14 (article ID). Strain(s): 81  PubMed: 24526634 DOI: 10.1128/genomeA.00044-14 Cao, H., Shimura, Y., Steffen, M. M., Yang, Z., Lu, J., Joel, A., Jenkins, L., Kawachi, M., Yin, Y., Garcia-Pichel, F. 2020 The trait repertoire enabling cyanobacteria to bloom assessed through comparative genomic complexity and metatranscriptomics. mBio, 11, e01155-20 (article ID). Keywords: Symbiodiniaceae; Durusdinium trenchii; WGS; MAAs; GMC oxidoreductase Strain(s): 81,  843  PubMed: 32605986 DOI: 10.1128/mBio.01155-20 Cao, H., Xu, D., Zhang, T., Ren, Q., Xiang, L., Ning, C., Zhang, Y., Gao, R. 2022 Comprehensive and functional analyses reveal the genomic diversity and potential toxicity of Microcystis. Harmful Algae, 113, 102186 (article ID). 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Keywords: cyanobacteria; Phylogeny; 16S rDNA; systematics Strain(s): 592,  3754,  4106  PubMed: 31837017 DOI: 10.1111/jpy.12954 Cattolico, R. A., Jacobs, M. A., Zhou, Y., Chang, J., Duplessis, M., Lybrand, T., McKay, J., Ong, H. C., Sims, E., Rocap, G. 2008 Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics, 9, 211-230. Strain(s): 293  PubMed: 18462506 DOI: 10.1186/1471-2164-9-211 Cellamare, M., Duval, C., Drelin, Y., Djediat, C., Touibi, N., Agogué, H., Leboulanger, C., Ader, M., Bernard, C. 2018 Characterization of phototrophic microorganisms and description of new cyanobacteria isolated from the saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean). FEMS Microbiol. Ecol., 94 fiy108 (article ID). Keywords: cyanobacteria; microalgae; crater-lake; saline-alkaline lake; polyphasic approach; Arthrospira Strain(s): 1410  PubMed: 29878107 DOI: 10.1093/femsec/fiy108 Chambonniere, P., Ramírez-Romero, A., Dimitriades-Lemaire, A., Sassi, J.-E., Delrue, F. 2022 Photosynthetic carbon uptake correlates with cell protein content during lipid accumulation in the microalga Chlorella vulgaris NIES 227. FERMENTATION, 8, 614 (article ID). Keywords: microalgae; Chlorella vulgaris; photosynthesis; productivity; biofuel; lipid Strain(s): 227  DOI: 10.3390/fermentation8110614 Chamizo, S., Adessi, A., Certini, G., De Philippis, R. 2020 Cyanobacteria inoculation as a potential tool for stabilization of burned soils. Restor. Ecol., 28, S106-S114. Keywords: biocrust; erosion; exopolysaccharide content; hydrophobicity; penetration resistance; wildfire Strain(s): 1956,  2121  DOI: 10.1111/rec.13092 Chamizo, S., Adessi, A., Mugnai, G., Simiani, A., De Philippis, R. 2019 Soil type and cyanobacteria species influence the macromolecular and chemical characteristics of the polysaccharidic matrix in induced biocrusts. Microb. Ecol., 78, 482–493. Keywords: Biological soil crust; Cyanobacteria inoculation; Molecular weight; Monosaccharide composition; Loosely bound; EPS; Tightly bound EPS Strain(s): 1956,  2121  PubMed: 30535915 DOI: 10.1007/s00248-018-1305-y Chamizo, S., Mugnai, G., Rossi, F., Certini, G., De Philippis, R. 2018 Cyanobacteria inoculation improves soil stability and fertility on different textured soils: Gaining insights for applicability in soil restoration. Front. Environ. Sci., 6, 49 (article ID). Keywords: autotrophic organisms; biocrust development; exopolysaccharides; organic carbon; soil nitrogen, soil; degradation Strain(s): 1956,  2121  DOI: 10.3389/fenvs.2018.00049 Chatelain, P., Blanchard, C., Astier, J., Klinguer,A., Wendehenne, D., Jeandroz, S., Rosnoblet, C. 2022 Reliable reference genes and abiotic stress marker genes in Klebsormidium nitens. Sci Rep, 12, 18988 (article ID). Strain(s): 2285  PubMed: 36348043 DOI: 10.1038/s41598-022-23783-9 Chen, K., Tanaka, H., Takeda, F., Ebie, Y., Yamazaki, H. 2023 Evaluation of algal growth inhibition of effluents for treated water from tandoku-syori and gappei-syori johkasou using the WET method. J. Water Environ. Technol., 21, 141-150. Keywords: whole effluent toxicity; drainage management; Raphidocelis subcapitata; johkasou Strain(s): 35  DOI: 10.2965/jwet.22-084 Chen, M., Rubin, G. M., Jiang, G., Raad, Z., Ding, Y. 2021 Biosynthesis and heterologous production of mycosporine-like amino acid palythines. J. Org. 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Keywords: Oleaginous filamentous microalgae; Phenol removal; Phenol-uptake capacity; Residual phenol Strain(s): 2175  PubMed: 28526282 DOI: 10.1016/j.biortech.2017.05.040 Cheng, Y.-I., Chou, L., Chiu, Y.-F., Hsueh, H.-T., Kuo, C.-H., Chu, H.-A. 2020 Comparative genomic analysis of a novel strain of Taiwan hot-spring cyanobacterium Thermosynechococcus sp. CL-1. Front. Microbiol., 11, 82 (article ID). Keywords: cyanobacterium; Thermosynechococcus; genome; comparative genomics; thermophilic; cyanobacterium; adaption Strain(s): 2134  PubMed: 32082292 DOI: 10.3389/fmicb.2020.000 Chernomor, O., Peters, L., Schneidewind, J., Loeschcke, A., Knieps-Grünhagen, E., Schmitz, F., von Lieres, E.,Kutta, R. J., Svensson, V., Jaeger, K., Drepper, T.,von Haeseler, A., Krauss, U. 2021 Complex evolution of light-dependent protochlorophyllide oxidoreductases in aerobic anoxygenic phototrophs: origin, phylogeny and function. Mol. Biol. Evol., 38, 819-837. Keywords: light-driven enzyme; chlorophyll biosynthesis; evolution; aerobic anoxygenic phototrophic bacteria; photosynthesis Strain(s): 981,  2135  PubMed: 32931580 DOI: 10.1093/molbev/msaa234 Chia, M. A., Ameh, I., George, K. C., Balogun, E. O., Akinyemi, S. A., Lorenzi, A. S. 2022 Genetic diversity of microcystin producers (cyanobacteria) and microcystin congeners in aquatic resources across Africa: A review paper. Toxins, 10, 772 (article ID). Keywords: biological risk; cyanobacteria; cyanotoxin; water supply; African continent; molecular markers; mcy genes Strain(s): 89,  102,  298,  843  PubMed: 36548605 DOI: 10.3390/toxics10120772 Chiang, Y.-H., Huang, Y.-J., Fu, H.-Y. 2022 Identifcation of multiple nonphotochemical quenching processes in the extremophilic red alga Cyanidioschyzon merolae. Photosynth. Res., 154, 125–141. Keywords: Energy spillover; Energetic decoupling; Functional antenna size Strain(s): 3377  PubMed: 36155877 DOI: 10.1007/s11120-022-00963-2 Chihara, M., Inouye, I., Takahata, N. 1986 Oltmannsiellopsis., a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae). Arch. Protistenk., 132, 313-324. Strain(s): 359,  360  DOI: 10.1016/S0003-9365(86)80026-4 Chin, Y.-Y., Chu, W.-L., Kok, Y.-Y., Phang, S.-M., Wong, C.-Y., Tan, B.-K., Mustafa, E. M. 2019 Sensitivity of selected tropical microalgae isolated from a farmland and a eutrophic lake to atrazine and endosulfan. J. Appl. Phycol., 31, 2981–299. Keywords: Atrazine; Endosulfan; Microalgae; Oxidative stress; Chlorella; Scenedesmus Strain(s): 35  DOI: 10.1007/s10811-019-01800-1 China, S. & Fujii, K. 2018 Isolation of high-CO2-acclimated Micractinium sp. strains from eutrophic reservoir water. Algal Res., 34, 126-133. Keywords: Micractinium sp.; High-CO2-acclimation; Vitamin; γ-Aminobutyric acid; C18 unsaturated fatty acid Strain(s): 4129,  4130  DOI: 10.1016/j.algal.2018.07.015 Chiu, Y.-T., Yen, H.-K., Lin, T.-F. 2016 An alternativemethodtoquantify2-MIB producing cyanobacteriain in drinking water reservoirs: Method development and field applications. Environ. Res., 151, 618-627. Keywords: Cyanobacteria; 2-methylisoborneol(2-MIB); 2-MIB-synthesis gene(mibC gene); Tasteandodor; Real-timePCR Strain(s): 81,  512,  824,  905,  2104,  2116  PubMed: 27607443 DOI: 10.1016/j.envres.2016.08.034 Cho, S. J., Sung, Y. J., Lee, J. S., Yu, B. S., Sim, S. J. 2021 Robust cyst germination induction in Haematococcus pluvialis to enhance astaxanthin productivity in a semi-continuous outdoor culture system using power plant flue gas. Bioresour. Technol., 338, 125533 (article ID). Keywords: Haematococcus pluvialis; Astaxanthin; Cyst germination; Outdoor semi-continuous culture; Power plant flue gas Strain(s): 144  PubMed: 34284295 DOI: 10.1016/j.biortech.2021.125533 Cho, Y., Hidema, S., Omura, T., Koike, K., Koike, K., Oikawa, H., Konoki, K., Oshima, Y., Yotsu-Yamashita, M. 2021 SxtA localizes to chloroplasts and changes to its 3′UTR may reduce toxin biosynthesis in non-toxic Alexandrium catenella (Group I). Harmful Algae, 101, 101972 (article ID). Keywords: Saxitoxin; Biosynthesis; Dinoflagellate; Chloroplast; Localization; 3′UTR Strain(s): 678  PubMed: 33526188 DOI: 10.1016/j.hal.2020.101972 Cho, Y., Ozeki, R., Yotsu-Yamashita, M., Oshima, Y. 2013 Single-cell analysis of paralytic shellfish toxins in Alexandrium tamarense by HPLC with post-column fluorescent derivatization. Harmful Algae, 25, 47-53. Keywords: Single-cell analysis; Alexandrium tamarense; Paralytic shellfish toxins Strain(s): 678  DOI: 10.1016/j.hal.2013.02.005 Cho, Y.-L., Lee, Y.-C., Hsu, L.-C., Wang, C.-C., Chen, P.-C., Liu, S.-L., Teah, H.-Y., Liu, Y.-T., Tzou, Y.-M. 2020 Molecular mechanisms for Pb removal by Cyanidiales: a potential biomaterial applied in thermo-acidic conditions. Chem. Eng. J., 401, 125828 (article ID). Keywords: Cyanidiales; Thermoacidophilic; Lead; Speciation; XAS; Protein secondary structure Strain(s): 551,  3377  DOI: 10.1016/j.cej.2020.125828 Choi, G-G., Ahn, C-Y., Oh, H-M. 2012 Phylogenetic relationships of Arthrospira strains inferred from 16S rRNA gene and cpcBA-IGS sequences. Algae, 27, 75-82. Keywords: Arthrospira (Spirulina); cpcBA-IGS; phylogenetic analysis; 16S rRNA gene Strain(s): 39,  46  DOI: 10.4490/algae.2012.27.2.075 Choi, H. I., Lee, J. S., Choi, J. W., Shin, Y. S., Sung, Y. J., Hong, M. E., Kwak, H. S., Kim, C. Y., Sim, S. J. 2019 Performance and potential appraisal of various microalgae as direct combustion fuel. Bioresour. Technol., 273, 341-349. Keywords: Microalgae; Solid fuel; Direct combustion; The holistic analyses; Negative emissions Strain(s): 144  PubMed: 30448687 DOI: 10.1016/j.biortech.2018.11.030 Choi, H. J., Joo, J.-H., Kim, J.-H., Wang, P., Ki, J.-S. 2018 Morphological characterization and molecular phylogenetic analysis of Dolichospermum hangangense (Nostocales, Cyanobacteria) sp. nov. from Han River, Korea. Algae, 33, 143-156. Keywords: Dolichospermum hangangense; morphology; rbcLX; 16S rRNA; 16S-23S ITS Strain(s): 817,  1681,  1683,  1934  DOI: 10.4490/algae.2018.33.5.2 Choi, K., Imai, A., Kim, B., Matsushige, K. 2001 Properties of dissolved organic carbon (DOC) released by three species of blue-green algae. Korean J. Limnol., 34, 20-29. Keywords: extracellular organic carbon; fractionation; blue-green algae; growth phases Strain(s): 44,  74,  204  Choi, K., Ueki, M., Imai, A., Kim, B., Kawabata, Z. 2004 Photoalteration of dissolved organic matter (DOM) released from Microcystis aeruginosa in different growth phases: DOM-fraction distribution and biodegradability. Arch. Hydrobiol., 159, 271-286. Keywords: algal DOM; growth phase; UV effects; photoalteration; biodegradability; chemical composition Strain(s): 843  DOI: 10.1127/0003-9136/2004/0159-0271 Choi, Y. Y., Joun, J. M., Lee, J., Hong, M. E., Pham, H., Chang, W. S., Sim, S. J. 2017 Development of large-scale and economic pH control system for outdoor cultivation of microalgae Haematococcus pluvialis using industrial flue. Bioresour. Technol., 244, 1235-1244. Keywords: Haematococcus pluvialis; Astaxanthin; Polymeric thin-film photobioreactor; Autotrophic buffer system; Flue gas Strain(s): 144  PubMed: 28647321 DOI: 10.1016/j.biortech.2017.05.147 Choi, YY., Hong, ME., Jin, ES., Woo, HM., Sim, SJ 2018 Improvement in modular scalability of polymeric thin-film photobioreactor for autotrophic culturing of Haematococcus pluvialis using industrial flue gas. Bioresour. Technol., 249, 519-526. Keywords: Haematococcus pluvialis; Autotrophic; Bubble column photobioreactor; Scale-up; Hydrodynamic property Strain(s): 144  PubMed: 29078178 DOI: 10.1016/j.biortech.2017.10.060 Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188. Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida Strain(s): 763,  764,  966,  1369,  1961  PubMed: 24680917 DOI: 10.1016/j.ympev.2014.03.019 Chonudomkul, D., Yongmanitchai, W., Theeragool, G., Kawachi, M., Kasai, F., Kaya, K., Watanabe, M. M. 2004 Morphology, genetic diversity, temperature tolerance and toxicity of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) strains from Thailand and Japan. FEMS Microbiol. Ecol., 48, 345-355. Keywords: toxic cyanobacteria; Cylindrospermopsis raciborskii; STRR sequences; Thailand; Japan; low-temperature adapted group; genotypic clusters Strain(s): 991,  992,  993,  1040,  1041,  3085,  3086,  3087,  3088,  3089,  3091,  3092,  3093,  3094,  3095,  3096,  3097,  3098,  3099,  3100,  3101,  3102,  3103  PubMed: 19712304 DOI: 10.1016/j.femsec.2004.02.014 Christodoulou, M., Wahlsten, M., Sivonen, K. 2023 Morphological and Molecular Evaluation of Pseudanabaena epilithica sp. nov. and P. suomiensis sp. nov. (Pseudanabaenaceae, Cyanobacteria) from Finland. Diversity-Basel, 15, 909 (article ID). Keywords: Pseudanabaena; cyanobacteria; polyphasic approach; 16S rRNA gene; 16S–23S ITS; Finland Strain(s): 512,  4062,  4063,  4064,  4065,  4237,  4238  DOI: 10.3390/d15080909 Chu, C. Y., Liao, W. R., Huang, R., Lin, L. P. 2004 Haemagglutinating and antibiotic activities of freshwater microalgae. World J. Microbiol. Biotechnol., 20, 817–825. Keywords: Antibiotic activity; erythrocytes; freshwater microalgae; haemagglutination Strain(s): 226,  227,  2159,  2163,  2165,  2169,  2175,  2189,  2208,  2211,  2213,  2214,  2229,  2231,  2233,  2240,  2241,  2243,  2247,  2248,  3277,  3284  DOI: 10.1007/s11274-004-8712-6 Chumpolkulwong, N., Kakizono, T., Ishii, H. 1997 Enzymatic conversion of b-carotene to astaxanthin by cell-extracts of a green alga Haematococcus pluvialis. Biotechnol. Lett., 19, 443-446. Strain(s): 144  DOI: 10.1023/A:1018392010218 Churro, C., Semedo-Aguiar, A. P., Silva, A.D., Pereira-Leal, J. B., Leite, R. B. 2020 A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Sci Rep, 10, 8679 (article ID). Strain(s): 25,  2100,  2111  PubMed: 32457360 DOI: 10.1038/s41598-020-64774-y Ciniglia, C., Cascone, C., Giudice, R. L., Pinto, G., Pollio, A. 2005 Application of methods for assessing the geno- and cytotoxicity of Triclosan to C. ehrenbergii. J. Hazard. Mater., 122, 227-232. Keywords: Closterium ehrenbergii; Triclosan; sexual reproduction; vegetative reproduction; comet assay Strain(s): 228,  229  PubMed: 15967278 DOI: 10.1016/j.jhazmat.2005.03.002 Coesel, P. F. M. 1991 Ammonium dependency in Closterium aciculare T. West, a planktonic desmid from alkaline, eutrophic waters. J. Plankton Res., 13, 913-922. Strain(s): 258  DOI: 10.1093/plankt/13.5.913 Coleman, A. W. 1959 Sexual isolation in Pandorina morum. J. Protozool., 6, 249-264. Strain(s): 886,  887  DOI: 10.1111/j.1550-7408.1959.tb04366.x Coleman, A. W. 1988 The autofluorescent flagellum: a new phylogenetic enigma. J. Phycol., 24, 118-120. Keywords: autofluorescence; Chrysophyceae; flagellum; fluorescence; heterokont; Ochromonas; photoreceptor; Prymnesium Strain(s): 2142,  2144  DOI: 10.1111/j.1529-8817.1988.tb04465.x Coleman, A.W. 2001 Biogeography and speciation in the Pandorina/Volvulina (Chlorophyta) superclade. J. Phycol., 37, 836-851. Keywords: biogeography; ITS; Pandorina; Volvulina; Volvocaceae; phylogenetics; speciation; Yamagishiella Strain(s): 583  DOI: 10.1046/j.1529-8817.2001.01043.x Connell, L. 2002 Rapid identification of marine algae (Raphidophyceae) using three-primer peR amplification of nuclear internal transcribed spacer (ITS) regions from fresh and archived material. Phycologia, 41, 15-21. Strain(s): 1,  15  DOI: 10.2216/i0031-8884-41-1-15.1 Connell, L. & Cattolico, R. A. 1996 Fragile algae: axenic culture of field-collected samples of Heterosigma carterae. Mar. Biol., 125, 421-426. Strain(s): 293  DOI: 10.1007/BF00346322 Conradi, F. D., Mullineaux, C. W., Wilde, A. 2020 The role of the cyanobacterial Type IV pilus machinery in finding and maintaining a favourable environment. Life-Basel, 10, 252 (article ID). Strain(s): 2133  PubMed: 33114175 DOI: 10.3390/life10110252 Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl. Environ. Microbiol., 69, 5716-5721. Strain(s): 1341,  1342,  1343,  1344,  1345,  1346,  1347,  1348  PubMed: 12957969 DOI: 10.1128/AEM.69.9.5716-5721.2003 Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting. J. Microbiol. Methods, 55, 361-370. Keywords: cell culture; eukaryotic autotrophic picoplankton; flow cytometry; phycocyanin; phycoerythrin; Synechococcus Strain(s): 1341,  1342,  1343,  1344,  1345,  1346,  1347,  1348  Cunningham, B. R., Greenwold, M. J., Lachenmyer, E. M., Heidenreich, K, M., Davis, A. C., Dudycha, J. L., Richardson, T. L. 2019 Light capture and pigment diversity in marine and freshwater cryptophytes. J. Phycol., 55, 552-564. Strain(s): 697,  698,  701,  702,  708  PubMed: 30468692 DOI: 10.1111/jpy.12816 Cunningham, Jr., F. X., Lee, H., Gantt, E. 2007 Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. Eukaryot. Cell, 6, 533-545. Strain(s): 1332,  3377  PubMed: 17085635 DOI: 10.1128/EC.00265-06 Curren, E., Teruaki, Y., Kuwahara, V. S., Leong, S. C. Y. 2019 Rapid profiling of tropical marine cyanobacterial communities. Reg. Stud. Mar. Sci., 25, 100485 (article ID). Keywords: Cyanobacteria; MinION-Oxford Nanopore sequencer; Biodiversity; 16S rRNA amplicon sequencing; Long-read sequencing; Coastal waters; Southeast Asia; Monitoring Strain(s): 22,  25,  42,  843,  2135,  2481  DOI: 10.1016/j.rsma.2018.100485 Dahedl, E. K. & Urakawa, H. 2023 Differential effects of hydrogen peroxide and L-lysine treatments on the growth of freshwater Cyanophyta and Chlorophyta. Ecologies, 4, 355-370. Keywords: hydrogen peroxide; L-lysine; algaecide; Microcystis aeruginosa; cyanobacteria Strain(s): 88,  102,  843,  4325  DOI: 10.3390/ecologies4020023 Danbara, A. & Shiraiwa, Y. 1999 The requirement of selenium for the growth of marine coccolithophorids, Emiliania huxleyi, Gephyrocapsa oceanica and Helladosphaera sp. (Prymnesiophyceae). Plant Cell Physiol, 40, 762-766. Keywords: artificial seawater; coccolithophorids; Emiliania huxleyi; Gephyrocapsa oceanica; Helladosphaera; selenium-depletion; selenium-requirement Strain(s): 837,  838  DOI: 10.1093/oxfordjournals.pcp.a029603 Darienko, T., Gustavs, L., Eggert, A., Wolf, W., Pröschold, T. 2015 Evaluating the species boundaries of green microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) using integrative taxonomy and DNA barcoding with further implications for the species identification in environmental samples. PLoS One, 10, e0127838 (article ID). Strain(s): 2252,  2353  PubMed: 26080086 DOI: 10.1371/journal.pone.0127838 Davison, H. R., Pilgrim, J., Wybouw, N., Parker, J., Pirro, S., Hunter-Barnett, S., Campbell, P. M., Blow, F., Darby, A. C., Hurst, G. D. D., Siozios, S. 2022 Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group. Nat. Commun., 13, 2630 (article ID). Strain(s): 296,  425  PubMed: 35551207 DOI: 10.1038/s41467-022-30385-6 Davison, J. R. & Bewley, C. A. 2019 Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii. J. Nat. Prod., 82, 148-153. Strain(s): 1699  PubMed: 30623657 DOI: 10.1021/acs.jnatprod.8b00858 Davison, J. R., Rajwani, R., Zhao, G., Bewley, C. A. 2023 The genome of antibiotic-producing colonies of the Pelagophyte alga Chrysophaeum taylorii reveals a diverse and non-canonical capacity for secondary metabolism. Sci Rep, 13, 11944 (article ID). Strain(s): 1699  PubMed: 37488207 DOI: 10.1038/s41598-023-38042-8 De Halperin, D. R., Mendoza, M. L., De Caire, G. Z. 1973 Axenic cultures of blue-green algae (Cyanophyta). Physis secc. B. Buenos Aires., 32, 67-84 (in Spanish with English summary). Strain(s): 37  de Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R. 2018 Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nat. Commun., 9, 1341 (article ID). Keywords: DNA methylation; Epigenomics; Molecular evolution; Transposition Strain(s): 2285  PubMed: 29632298 DOI: 10.1038/s41467-018-03724-9 Decelle, J., Probert, I., Bittner, L., Not, F. 2012 An original mode of symbiosis in open ocean plankton. Proc. Natl. Acad. Sci. U. S. A., 109, 18000-18005. Strain(s): 388,  1396  PubMed: 23071304 DOI: 10.1073/pnas.1212303109 Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445. Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists Strain(s): 763,  764,  2565  PubMed: 25740460 DOI: 10.1111/1755-0998.12401 Deka, D., Marwein, R., Chikkaputtaiah, C., Kaki, S. S., Azmeera, T., Boruah, H. P. D., Velmurugan, N. 2020 Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry. Process Biochem., 96, 90-101. Keywords: Long-chain fatty acids; Micractinium sp.; Strain improvement; Fluorescent activated cell sorter; Adaptive evolution Strain(s): 2590  DOI: 10.1016/j.procbio.2020.06.004 del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I. 2014 The others: our biased perspective of eukaryotic genomes. Trends Ecol. Evol., 29, 252-259. Strain(s): 1000,  2582,  2584,  2587,  2590,  2670,  2673,  2691,  2693,  2694,  2695,  2696,  2697,  2699,  2700,  2707,  2751,  2753,  2755,  2756,  2758,  2761,  3369,  3370,  3371  PubMed: 24726347 DOI: 10.1016/j.tree.2014.03.006 Delaux, P-M., Radhakrishnan, G.V., Jayaraman, D., Cheema, J., Malbreil, M., Volkening, J.D., Sekimoto, H., Nishiyama, T., Melkonian, M., Pokorny, L., Rothfels, C.J., Sederoff, H.W., Stevenson, D.W., Surek, B., Zhang, Y., Sussman, M.R., Dunand, C., Morris, R.J., Roux, C., Wong, G.K-S., Oldroyd, G.E.D., Ané, J-M. 2015 Algal ancestor of land plants was preadapted for symbiosis. Proc. Natl. Acad. Sci. U. S. A., 112, 13390-13395 Keywords: symbiosis; plant evolution; algae; plant–microbe interactions; phylogeny Strain(s): 67  PubMed: 26438870 DOI: 10.1073/pnas.1515426112 Delmont, T. O. & Eren, A. M. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ, 6, e4320 (article ID). Strain(s): 2880  PubMed: 29423345 DOI: 10.7717/peerj.4320 Delrue, F., Cerqueira, M. R. D., Compadre, A., Alvarez, P., Fleury, G., Escoffier, C., Sassi, J. F. 2021 Hydroponic farm wastewater treatment using an indigenous consortium. Processes, 9, 519 (article ID). Strain(s): 227,  2152  DOI: 10.3390/pr9030519 Demura, M., Kawachi, M., Kunugi, M., Nishizawa, T., Kasai, F., Watanabe, M. M. 2007 Development of microsatellite markers for the red tide-forming harmful species Chattonella antiqua, C. marina, and C. ovata (Raphidophyceae). Mol. Ecol. Notes, 7, 315-317. Keywords: Chattonella; harmful algal bloom; microsatellite; phytoplankton; Raphidophyceae; red tide Strain(s): 2  DOI: 10.1111/j.1471-8286.2006.01592.x Demura, M., Nakayama, T., Kasai, F., Kawachi, M. 2014 Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers. Phycol. Res., 62, 102-108. Keywords: Chattonella marina var. antiqua; Chattonella marina var. marina; genetic structure; isolation by distance; microsatellite marker; population genetics Strain(s): 1,  2,  3,  14,  83,  84,  85,  86,  113,  114,  115,  116,  118,  121,  161,  557,  1974,  1975,  1976,  1977,  1978,  1980,  1981,  1982,  1983,  1984,  2383,  2384,  2385,  2386,  2387,  2388,  2389,  2390,  2391,  2392,  2393,  2394,  2395,  2396,  2397,  2398,  2399,  2400,  2401,  2402,  2403,  2404,  2405,  2406,  2407,  2509,  2510,  2511,  2512,  2513,  2514,  2515,  2516,  2517,  2518  DOI: 10.1111/pre.12047 Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535. Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy Strain(s): 1,  2,  3,  5,  6,  9,  10,  14,  83,  84,  85,  113,  114,  116,  118,  146,  161,  293,  557,  561,  603,  671,  716,  849,  1974,  1975,  1976,  1977,  1978,  1980,  1981,  1982,  1983,  1984,  1986,  2383,  2384,  2385,  2386,  2387,  2388,  2389,  2391,  2392,  2393,  2394,  2395,  2396,  2397,  2398,  2399,  2400,  2401,  2402,  2403,  2404,  2405,  2406,  2407  DOI: 10.2216/08-98.1 Denboh, T., Hendrayanti, D., Ichimura, T. 2001 Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data. J. Phycol., 37, 1063-1072. Keywords: Charophyceae; Closterium; desmid; molecular phylogeny; placoderm; SSU rDNA; Zygnematales Strain(s): 52,  125,  165,  170,  174,  175,  180,  181,  185,  187,  188,  191,  194,  198,  199,  200,  339,  449  DOI: 10.1046/j.1529-8817.2001.00146.x Denboh, T., Ichimura, T., Hendrayanti, D., Coleman, A. W. 2003 Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 Group I intron and ITS2 of nuclear rDNA. J. Phycol., 39, 960-977. Keywords: biological species; Closterium; group I introns; ITS2; mating group; molecular phylogeny; speciation Strain(s): 172,  173,  174,  182,  183,  228,  229  DOI: 10.1046/j.1529-8817.2003.02145.x Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A. 2019 Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon. Algal Res., 40, 101492. Keywords: Chrysochromulina; Freshwater; Scale-less; Electron microscopy; Morphology; Cryptic species complexes Strain(s): 562  DOI: 10.1016/j.algal.2019.101492 Devi, A., Chiu, Y.-T., Hsueh, H.-T., Lin, T.-F. 2021 Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges. Water Res., 188, 116478 (article ID). Keywords: biomolecular; drinking water; database; geo; mic; monitoring; Taq-Man probes Strain(s): 512,  4062,  4063,  4237,  4238  PubMed: 33045635 DOI: 10.1016/j.watres.2020.116478 Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Comparative ecophysiology of the xanthophyll cycle in six marine phytoplanktonic species. Protist, 160, 397-411. Keywords: diatoxanthin; photoprotection; phytoplankton; picoplankton; pigments; xanthophyll cycle Strain(s): 2687  PubMed: 19375387 DOI: 10.1016/j.protis.2009.03.001 Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnol. Oceanogr., 54, 823-836. Strain(s): 2690  DOI: 10.4319/lo.2009.54.3.0823 Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Blue light induction of carbonic anhydrase activity in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 215-219. Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photoreceptor Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a077732 Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Light requirement for carbonic anhydrase induction in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 207-213. Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; light intensity Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a077731 Dionisio-Sese, M. L., Fukuzawa, H., Miyachi, S. 1990 Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol., 94, 1103-1110. Strain(s): 2235  PubMed: 16667803 DOI: 10.1104/pp.94.3.1103 Dionisio-Sese, M. L., Miyachi, S. 1992 The effect of sodium chloride on carbonic anhydrase activity in marine microalgae. J. Phycol., 28, 619-624. Keywords: carbonic anhydrase; Cl- activation; Cl- inhibition; marine microalgae; NaCl effect; photosynthesis Strain(s): 2168  DOI: 10.1111/j.0022-3646.1992.00619.x Dittami, S. M., Riisberg, I., Edvardsen, B. 2013 Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta). Environ. Sci. Pollut. Res., 20, 6824-6837. Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR Strain(s): 670  PubMed: 23361173 DOI: 10.1007/s11356-012-1402-2 do Amaral, S. C., Monteiro, P. R., Neto, J. d. S. P., Serra, G. M., Gonçalves, E. C., Xavier, L. P., Santos, A. V. 2021 Current knowledge on microviridin from cyanobacteria. Mar. Drugs, 19, 17 (article ID). Keywords: biotechnology; cyanobacteria; ecology; microviridin; oligopeptide Strain(s): 298,  834,  1211  PubMed: 33406599 DOI: 10.3390/md19010017 Domínguez-Bocanegra, A. R., Legarreta, I. G., Jeronimo, F. M. 2004 Influence of environmental and nutritional factors in the production of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 92, 209-214. Keywords: Haematococcus; Astaxanthin production; Light intensity; Aeration Strain(s): 144  PubMed: 14693455 DOI: 10.1016/j.biortech.2003.04.001 Domínguez-Bocanegra, A. R., Ponce-Noyola, T., Torres-Muñoz, J. A. 2007 Astaxanthin production by Phaffia rhodozyma and Haematococcus pluvialis: a comparative study. Appl. Microbiol. Biotechnol., 75, 783-791. Keywords: Haematococcus pluvialis; Phaffia rhodozyma; Astaxanthin synthesis; Coconut milk Strain(s): 144  PubMed: 17333170 DOI: 10.1007/s00253-007-0889-9 Domínguez-Martín, M. A., Gómez-Baena, G., Díez J., López-Grueso, M. J., Beynon, R. J., García-Fernández, J. M. 2017 Quantitative proteomics shows extensive remodeling induced by nitrogen limitation in Prochlorococcus marinus SS120. mSystems., 2, e00008-17 (article ID). Keywords: marine cyanobacteria; nitrogen limitation; nitrogen metabolism; prochlorococcus; quantitative proteomics Strain(s): 2880  PubMed: 28593196 DOI: 10.1128/mSystems.00008-17 Donia, M. S., Schmidt, E. W. 2011 Linking chemistry and genetics in the growing cyanobactin natural products family. Chem. Biol., 18, 508-519. Strain(s): 596  PubMed: 21513887 DOI: 10.1016/j.chembiol.2011.01.019 Dorantes-Aranda, J. J., Nichols, P. D., Waite, T. D., Hallegraeff, G. M. 2013 Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells. J. Phycol., 2, 427-438. Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1 Strain(s): 118  PubMed: 27008528 DOI: 10.1111/jpy.12053 Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R. 2019 Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923. Keywords: heterotrophy; ochrophyte; phylogenomics; dual targeting; protist Strain(s): 1846  PubMed: 30872488 DOI: 10.1073/pnas.1819976116 Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID). Strain(s): 4391  PubMed: 24453981 DOI: 10.1371/journal.pgen.1004008 Dreher, T. W., Davis, E. W., Mueller, R. S., Otten, T. G. 2021 Comparative genomics of the ADA clade within the Nostocales. Harmful Algae, 104, 102037 (article ID). Keywords: Dolichospermum; Aphanizomenon; Anabaena; Mobilome; Genome synteny; Cyanotoxin genes Strain(s): 80,  81,  806  PubMed: 34023075 DOI: 10.1016/j.hal.2021.102037 Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W. 2018 A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales. Harmful Algae, 77, 93-107. Keywords: Genomics; Metagenomics; Filamentous cyanobacteria Strain(s): 81  PubMed: 30005805 DOI: 10.1016/j.hal.2018.05.009 Du, HW., Yang, LY., Wu, J., Xiao, L., Wang, XL., Jiang, LJ. 2012 Simultaneous removal of phosphorus and nitrogen in a sequencing batch biofilm reactor with transgenic bacteria expressing polyphosphate kinase. Appl. Microbiol. Biotechnol., 96, 265-272. Keywords: Poly-phosphate kinase gene; Pseudomonas putida; Sequencing batch biofilm reactor; Phosphorus removal; Nitrogen removal Strain(s): 843  PubMed: 22218771 DOI: 10.1007/s00253-011-3839-5 Dufresne, A., Garczarek, L., Partensky, F. 2005 Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol., 6, R14 (article ID). Strain(s): 2880,  2887  PubMed: 15693943 DOI: 10.1186/gb-2005-6-2-r14 Dulić, T., Svirčev, Z., Palanački Malešević, T., Faassen, E. J., Savela, H., Hao, Q., Meriluoto, J. 2022 Assessment of common cyanotoxins in cyanobacteria of biological loess crusts. Toxins, 14, 215 (article ID). Keywords: cyanotoxins; biocrusts; loess; terrestrial cyanobacteria; sedimentary biosignatures; land restoration Strain(s): 107  PubMed: 35324712 DOI: 10.3390/toxins14030215 Duque, P., Vieira, C. P., Vieira, J. 2022 Advances in novel animal Vitamin C biosynthesis pathways and the role of prokaryote-based inferences to understand their origin. Genes, 13, 1917 (article ID). Keywords: ascorbic acid; evolution; synthesis; aldonolactone oxidoreductases; insects; nematodes; prokaryotes Strain(s): 267  PubMed: 36292802 DOI: 10.3390/genes13101917 Dwi, S., Hirata, K., Asada, Y., Miyamoto, K. 2001 Utilization of cyanobacterial biomass from water bloom for bioproduction of lactic acid. World J. Microbiol. Biotech., 17, 259-264. Keywords: cyanobacterium; CO2 supplementation; lactic acid; Lactobacillus agilis; L. amylovorus; L. ruminis; starch; water bloom Strain(s): 23,  44  DOI: 10.1023/A:1016638619 Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z. 2019 The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš. Toxins, 11, 725 (article ID). Keywords: microcystin; biodegradation; hydrogen peroxide; treatment; cyanobacteria; bloom Strain(s): 107  PubMed: 31835838 DOI: 10.3390/toxins11120725 Edvardsen, B., Eikrem, W., Shalchian-Tabrizi, K., Riisberg, I., Johnsen, G., Naustvoll, L., Throndsen, J. 2007 Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. J. Phycol., 43, 1054-1070. Keywords: carotenoids; Chattonella; Dictyochophyceae; harmful algae; LSU rDNA; new taxon; phylogeny; SSU rDNA; ultrastructure Strain(s): 670  DOI: 10.1111/j.1529-8817.2007.00390.x Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228. Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy Strain(s): 1333,  1393  DOI: 10.1080/09670262.2011.594095 Edwin, N., Akhwale, J. K., Mwirichia, R. 2019 Phylogenetic and morphological diversity of culturable cyanobacteria from Lake Magadi in Kenya. Afr. J. Bio. Sc., 1, 24-31. Keywords: Cyanobacteria; Soda lakes; Extremophiles; Lake Magadi Strain(s): 208  DOI: 10.33472/AFJBS.1.4.2019.24-31 Ehara, M., Kitayama, T., Watanabe, K. I., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1999 Comprehensive molecular phylogenetic analysis of a heterokont alga (NIES 548) using genes from all three cellular compartments. Phycol. Res., 47, 225-231. Keywords: cytochrome oxydase subunit I; Phaeophyceae; Tribonema; Xanthophyceae Strain(s): 548  DOI: 10.1046/j.1440-1835.1999.00166.x Ehara, M., Watanabe, K. I., Kawai, H., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1998 Distribution of the mitochondrial deviant genetic code AUA for methionine in heterokont algae. J. Phycol., 34, 1005-1008. Keywords: cytochrome oxydase subunit I; deviant genetic code; heterokont algae; Phaeophyceae; Xanthophyceae Strain(s): 1  DOI: 10.1046/j.1529-8817.1998.341005.x Ehara, T., Ogasawara, Y., Osafune, T. 1990 Behavior of chloroplast nucleoids during the cell cycle of Chlamydomonas reinhardtii (Chlorophyta) in synchronized culture. J. Phycol., 26, 317-323. Keywords: cell cycle; Chlamydomons; chloroplast division; DAPI; nucleoid Strain(s): 2235  DOI: 10.1111/j.0022-3646.1990.00317.x Ehara, T., Osafune, T., Hase, E. 1985 Interactions between the nucleus and cytoplasmic organelles durihg the cell cycle of Euglena gracilis in synchronized cultures. III. Associations between the nucleus and chloroplasts at an early stage of the cell cycle under photoorganotrophic conditions (part II). Plant Cell Physiol., 26, 1155-1165. Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; Euglena gracilis; three-dimensional chloroplast model Strain(s): 48  Ehara, T., Osafune, T., Hase, E. 1990 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in synchronized cultures. Exp. Cell Res., 190, 104-112. Strain(s): 48  DOI: 10.1016/0014-4827(90)90150-9 Ehara, T., Shihira-Ishikawa, I., Osafune, T., Hase, E., Ohkuro, I. 1975 Some structural characteristics of chloroplast degeneration in cells of Euglena gracilis Z during their heterotrophic growth in darkness. J. Electron Microscopy, 24, 253-261. Strain(s): 48  DOI: 10.1093/oxfordjournals.jmicro.a049978 Ehara, T., Sumida, S., Osafune, T. 1988 Dynamic morphological changes of organelles in Euglena gracilis Z. J. Tokyo Med. Coll., 46, 420-431. Strain(s): 48  Ehara, T., Sumida, S., Osafune, T., Hase, E. 1984 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in cynchronized cultures. I. Associations between the nucleus and chloroplasts at an early stage in the cell cycle under photoorganotrophic conditions (Part I). Plant Cell Physiol., 25, 1133-1146. Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; chromosome; Euglena gracilis Strain(s): 48  Eikrem, W., Romari, K., Latasa, M., Le Gall, F., Throndsen, J., Vaulot, D. 2004 Florenciella parvula gen. et sp. nov. (Dictyochophyceae, Heterokontophyta), a small flagellate isolated from the English Channel. Phycologia, 43, 658-668. Strain(s): 2684  DOI: 10.2216/i0031-8884-43-6-658.1 Eio, E. J., Kawai, M., Niwa, C., Ito, M., Yamamoto, S., Toda, T. 2015 Biodegradation of bisphenol A by an algal-bacterial system. Environ. Sci. Pollut. Res., 22, 15145–15153. 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Strain(s): 2880,  2887  PubMed: 12713467 DOI: 10.1046/j.1462-2920.2003.00433.x Eliáš, M. Neustupa, J. 2009 Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae). a new genus for "budding" subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa. Fottea, 9, 169-177. Keywords: evolution; Marvania; Stichococcus; phylogeny; Trebouxiophyceae; 18S rRNA Strain(s): 996  DOI: 10.5507/fot.2009.017 Endo, B., Fujii, T., Kamiya, Y., Sekimoto, H. 1997 Analysis of genomic sequences encoding a sex pheromone from the Closterium peracerosum-strigosum-littorale complex. J. Plant Res., 110, 463-467. Keywords: cis-element; Closterium; genomic DNA; protoplast-release- inducing protein (PR-IP); sex pheromone; transcription Strain(s): 67,  68  DOI: 10.1007/BF02506807 Endo, H., Yoshida, M., Uji, T., Saga, N., Inoue, K., Nagasawa, H. 2016 Stable nuclear transformation system for the coccolithophorid alga Pleurochrysis carterae. Sci Rep, 6, 22252 (article ID). Strain(s): 4509  PubMed: 26947136 DOI: 10.1038/srep22252 Engesmo, A., Strand, D., Gran-Stadniczeñko, S., Edvardsen, B., Medlin, LK., Eikrem, W. 2018 Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae, 75, 105-117. Keywords: Karenia mikimotoi; Karlodinium veneficum; Heterosigma akashiwo; Molecular monitoring; rDNA; 454 high throughput environmental; sequencing; SEM Strain(s): 15  PubMed: 29778220 DOI: 10.1016/j.hal.2018.04.007 Erata, M. & Chihara, M. 1987 Cryptomonads from the Sugadaira-Moor, Central Japan. Bull. Sugadaira Mont. Res. Center, Univ. Tsukuba, 8, 57-69 (in Japanese with English summary). Strain(s): 706,  713,  714,  715  Erata, M. & Chihara, M. 1989 Re-examination of Pyrenomonas and Rhodomonas (Class Cryptophyceae) through ultrastructural survey of red pigmented cryptomonads. Bot. Mag. Tokyo, 102, 429-443. Keywords: nucleomorph; periplastidal compartment; Pyrenomonas; Rhodomonas Strain(s): 697,  698,  699,  700,  701,  702,  705,  706  DOI: 10.1007/BF02488125 Erata, M. & Chihara, M. 1991 Cryptomonads of Japan (2) three species of Chroomonas. J. Jpn. Bot., 66, 7-11. Strain(s): 706,  707,  708,  709,  710,  712,  713,  714,  727  Erata, M., Kubota, M., Takahashi, T., Inouye, I., Watanabe, M. 1995 Ultrastructure and phototactic action spectra of two genera of cryptophyte flagellate algae, Cryptomonas and Chroomonas. Protoplasma, 188, 258-266. Keywords: action spectrum; Chroomonas; Cryptomonas; cryptophyte; eyespot; phototaxis; phycobilin Strain(s): 707,  714  DOI: 10.1007/BF01280378 Erhard, M., von Döhren, H., Jungblut, P. 1997 Rapid typing and elucidation of new secondary metabolites of intact cyanobacteria using MALDI-TOF mass spectrometry. Nat. Biotechnol., 15, 906-909. 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(Nephroselmidophyceae, Chlorophyta). J. Phycol., 6, 1388-1396. Keywords: molecular phylogeny; morphology; Nephroselmidophyceae; Nephroselmis clavistella sp. nov.; scale morphology; taxonomy; ultrastructure Strain(s): 2867  PubMed: 27020363 DOI: 10.1111/j.1529-8817.2011.01059.x Fawley, M. W. 1991 Disjunct distribution of the xanthophyll loroxanthin in the green algae (Chlorophyta). J. Phycol., 27, 544-548. Keywords: carotenoids; Chlorophyta; high-performance liquid chromatography; loroxanthin; xanthophylls Strain(s): 2285  DOI: 10.1111/j.0022-3646.1991.00544.x Fawley, M. W., Fawley, K. P., Cahoon, A. B. 2021 Finding needles in a haystack—Extensive diversity in the eustigmatophyceae revealed by community metabarcode analysis targeting the rbcL gene using lineage-directed primers. J. Phycol., 57, 1636-1647. Keywords: algal diversity; community structure; environmental DNA; Eustigmatophyceae; metabar-coding; species diversity Strain(s): 2860  PubMed: 34218435 DOI: 10.1111/jpy.13196 Featherston, J., Arakaki, Y., Hanschen, E. R., Ferris, PJ., Michod, R. E., Olson, B. J. S. C., Nozaki, H., Durand P. M. 2018 The 4-celled Tetrabaena socialis nuclear genome reveals the essential components for genetic control of cell number at the origin of multicellularity in the volvocine lineage. Mol. Biol. Evol., 35, 855-870. Keywords: Volvocines; multicellularity; Tetrabaena socialis; evolutionary genomics Strain(s): 571  PubMed: 29294063 DOI: 10.1093/molbev/msx332 Featherston, J., Arakaki, Y., Nozaki, H., Durand, P. M., Smith, D. R. 2016 Inflated organelle genomes and a circularmapping mtDNA probably existed at the origin of coloniality in volvocine green algae. Eur. J. Phycol., 51, 369-377. Keywords: Genome expansion; green microalga; mitochondrial DNA; plastid DNA; Tetrabaena socialis; Volvocine algae Strain(s): 571  DOI: 10.1080/09670262.2016.1198830 Feinstein, T. N., Traslavina, R., Sun, M.-Y., Lin, S. 2002 Effects of light on photosynthesis, grazing, and population dynamics of the heterotrophic dinoflagellate Pfiesteria piscicida (Dinophyceae). J. Phycol., 38, 659-669. Keywords: cannibalism; grazing; growth; kleptoplastidy; light; Pfiesteria piscicida Strain(s): 1730  DOI: 10.1046/j.1529-8817.2002.01175.x Fekrat, F., Nami, B., Hejazi, M. A., Ghafari, M. R., Shahbazi, M. 2022 Correlation network analysis of metabolites reveals the role of nitrogen‑containing metabolic stressors in stimulating high‑value compounds biosynthesis in Arthrospira platensis. J. Appl. Phycol., 34, 1967–1982. Keywords: Arthrospira platensis; Aspartic acid; Monosodium glutamate; Metabolic stress Strain(s): 39  DOI: 10.1007/s10811-022-02753-8 Feng, S., Liu, F., Zhu, S., Feng, P., Wang, Z., Yuan, Z., Shang, C., Chen, H. 2020 Performance of a microalgal-bacterial consortium system for the treatmentof dairy-derived liquid digestate and biomass production. Bioresour. Technol., 306, 123101 (article ID). Keywords: Liquid digestate; C. vulgaris; Pollutant removal; Biomass production; Bacterial community analysis Strain(s): 227  PubMed: 32197188 DOI: 10.1016/j.biortech.2020.123101 Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A., Stitt, M., Mutwil, M. 2019 Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nat. Commun., 10, 737 (article ID). Strain(s): 2285  PubMed: 30760717 DOI: 10.1038/s41467-019-08703-2 Ferris, P., Olson, B. J., De Hoff, P. L., Douglass, S., Casero, D., Prochnik, S., Geng, S., Rai, R., Grimwood, J., Schmutz, J., Nishii, I., Hamaji, T., Nozaki, H., Pellegrini, M., Umen,J. G. 2010 Evolution of an expanded sex-determining locus in Volvox. Science, 328, 351-354. Strain(s): 732,  733  PubMed: 20395508 DOI: 10.1126/science.1186222 Fitriana, H.-N., Lee, S.-Y., Choi, S.-A., Lee, J.-Y., Kim, B.-L., Lee, J.-S., Oh, Y.-K. 2021 Electric stimulation of astaxanthin biosynthesis in Haematococcus pluvialis. Appl. Sci., 11, 3384 (article ID). Keywords: microalgae; Haematococcus pluvialis; astaxanthin; electric treatment; stimulation; stress Strain(s): 144  DOI: 10.3390/app11083348 Fitriyah, F., Faramitha, Y., Sari, D. A., Kresnawaty, I., Panji, T., Santoso, D. 2020 Molecular identification of species in genus Nannochloropsis using Ribulose-1,5-Biphosphate carboxylase/oxygenase large subunit (rbcL) gene barcode. Eurasia. J. Biosci., 14, 7855-7860. Keywords: DNA barcode; Microalgae; rbcL Strain(s): 2145,  2587  Fitriyah, F., Faramitha, Y., Sari, D. A., Kresnawaty, I., Panji, T., Santoso, D. 2021 Improved direct lysis PCR amplification method of microalgal culture for sequencing and species identification. IOP Conf. Ser.: Earth Environ. Sci., 948, 012013 (article ID). Strain(s): 2587  DOI: 10.1088/1755-1315/948/1/012013 Fjiwara, T. & Ohnuma, M. 2018 Procedures for transformation and their applications in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 87-103. Keywords: Transformation; Homologous recombination; Gene targeting; biotechnology; Algae; Genetic engineering Strain(s): 3377  DOI: 10.1007/978-981-10-6101-1_7 Flores, D. C., Fricke, M., Wesp, V., Desirò, D., Kniewasser, A., Hölzer, M., Marz, M., Mittag, M. 2021 A marine Chlamydomonas sp. emerging as an algal model. J. Phycol., 57, 54-69. Strain(s): 882,  2202,  2204,  2207,  2211,  2218,  2220,  2223,  2229,  2236,  2241,  2242,  2248  PubMed: 33043442 DOI: 10.1111/jpy.13083 Forni, C., Telo, F. R., Caiola, M. G. 1997 Comparative analysis of the polysaccharides produced by different species of Microcystis (Chroococcales, Cyanophyta) . Phycologia, 36, 181-185. Strain(s): 87,  98,  102,  112  DOI: 10.2216/i0031-8884-36-3-181.1 Foy, R. H. & Gibson, C. E. 1982 Photosynthetic characteristics of planktonic blue-green algae: the response of twenty strains grown under high and low light. Br. Phycol. J., 17, 169-182. Strain(s): 596  DOI: 10.1080/00071618200650171 Franklin, D. J., Steinke, M., Young, J., Probert, I., Malin, G. 2010 Dimethylsulphoniopropionate (DMSP), DMSP-lyase activity (DLA) and dimethylsulphide (DMS) in 10 species of coccolothophore. Mar. Ecol. Prog. Ser., 410, 13-23. Keywords: Marine sulphur cycle; Calcifying haptophytes; Biogeochemistry; Emiliania; Gephyrocapsa; Calcidiscus; Coccolithophores Strain(s): 2694,  2696,  2697,  2707  DOI: 10.3354/meps08596 Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H. 2017 Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton. ACS Omega, 2, 3175–3182. Keywords: Geological materials; Microbiology; Separation science; Toxicology; Water pollution Strain(s): 324  PubMed: 30023687 DOI: 10.1021/acsomega.7b00081 Fujii, K. 2012 Process integration of supercritical carbon dioxide extraction and acid treatment for astaxanthin extraction from a vegetative microalga. Food Bioprod. Process., 90, 762-766. Keywords: Supercritical carbon dioxide; Microalgae; Monoraphidium sp.; Astaxanthin; Chlorophyll Strain(s): 2267  DOI: 10.1016/j.fbp.2012.01.006 Fujii, K., Imazato, E., Nakashima, H., Ooi, O., Saeki, A. 2006 Isolation of the non-fastidious microalga with astaxanthin-accumulating property and its potential for application to aquaculture. Aquaculture, 261, 285-293. Keywords: Astaxanthin; Aquaculture; Microalgae; Monoraphidium Strain(s): 2267  DOI: 10.1016/j.aquaculture.2006.07.014 Fujii, K., Matsunobu, S., Takahashi, Y. 2014 Characterization of the new microalgal strains, Oogamochlamys spp., and their potential for biofuel production. Algal Res., 5, 164-170. Keywords: Lipid; Biofuel; Microalgae; Oogamochlamys Strain(s): 3643,  3644  DOI: 10.1016/j.algal.2014.08.003 Fujii, K., Nakajima, H, Anno, Y. 2008 Potential of Monoraphidium sp. GK12 for energy-saving astazanthin production. J. Chem. Tech. Biotechnol., 83, 1578-1584. Keywords: astaxanthin; microalgae; Monoraphidium sp.; outdoor cultivation; energy-saving technology Strain(s): 2267  DOI: 10.1002/jctb.1978 Fujii, K., Nakashima, H., Hashidzume, Y. 2010 Isolation of folate-producing microalgae, from oligotrophic ponds in Yamaguchi, Japan. J. Appl. Microbiol., 108, 1421-1429. Keywords: B-vitamins; Chlamydomonas; Chlorococcum; folate; microalgae; thiamine Strain(s): 2172,  2235,  2848,  2849,  2850,  2851  PubMed: 19796121 DOI: 10.1111/j.1365-2672.2009.04542.x Fujii, K., Nakashima, H., Hashidzume, Y., Uchiyama, T., Mishiro, K., Kadota, Y. 2010 Potential use of the astaxanthin-producing microalga, Monoraphidium sp. GK12, as a functional aquafeed for prawns. J. Appl. Phycol., 22, 363-369. Keywords: Astaxanthin; Vitamin; Unsaturated fatty acid; Microalgae; Monoraphidium; Functional aquafeed Strain(s): 2267  DOI: 10.1007/s10811-009-9468-z Fujii, K., Yahashi, Y., Nakano, T., Imanishi, S., Baldia, S. F., Harada, K. 2002 Simultaneous detection and determination of the absolute configuration of thiazole-containing amino acids in a peptide. Tetrahedron, 58, 6873-6879. Keywords: microcyclamide; absolute configuration; advanced Marfey's method; thiazole-containing (TZL-) amino acid Strain(s): 101,  298  DOI: 10.1016/S0040-4020(02)00748-2 Fujii, M., Sato, Y., Ito, H., Masago, Y., Omura, T. 2012 Monosaccharide composition of the outer membrane lipopolysaccharide and O-chain from the freshwater cyanobacterium Microcystis aeruginosa NIES-87. J. Appl. Microbiol., 113, 896-903. Keywords: chemical characterization, lipopolysaccharide, Microcystis aeruginosa, O-chain Strain(s): 87  DOI: 10.1111/j.1365-2672.2012.05405.x Fujisawa, T., Narikawa, R., Okamoto, S., Ehira, S., Yoshimura, H., Suzuki, I., Masuda, T., Mochimaru, M., Takaichi, S., Awai, K., Sekine, M., Horikawa, H., Yashiro, I., Omata, S., Takarada, H., Katano, Y., Kosugi, H., Tanikawa, S., Ohmori, K., Sato, N.,Ikeuchi, M., Fujita, N., Ohmori, M. 2010 Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39. DNA Res., 17, 85-103. Keywords: cyanobacteria; Arthrospira; health supplement; genome; cAMP Strain(s): 39  PubMed: 20203057 DOI: 10.1093/dnares/dsq004 Fujise, D., Tsuji, K., Fukushima, N., Kawai, K., Harada, K. 2010 Analytical aspects of cyanobacterial volatile organic compounds for investigation of their production behavior. J. Chromatogr. A, 1217, 6122-6125. Keywords: Cyanobacteria; Volatile organic compounds; Analysis; b-Cyclocitral; 2-Methyl-1-butanol; 3-Methyl-1-butanol; SPME Strain(s): 87,  298  DOI: 10.1016/j.chroma.2010.07.008 Fujita, K. 1958 The metabolism of acetate in Chlorella cells. J. Biochem., 46, 253-268. Strain(s): 2170  Fujita, Y. 1974 The light-induced oxidation-reduction reaction of cytochrome b-559 in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 15, 861-874. Strain(s): 23  DOI: 10.1093/oxfordjournals.pcp.a075075 Fujita, Y. 1975 Further investigation of the light-induced cytochrome b-559 reaction in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 16, 1037-1048. Strain(s): 23  DOI: 10.1093/oxfordjournals.pcp.a075223 Fujita, Y. 1976 The C550 photoresponse at room temperature observed in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 17, 187-191. Strain(s): 23  DOI: 10.1093/oxfordjournals.pcp.a075258 Fujita, Y. & Hattori, A. 1960 Formation of phycoerythrin in pre-illuminated cells of Tolypothrix tenuis with special reference to nitrogen metabolism. Plant Cell Physiol., 1, 281-292. Strain(s): 37  Fujita, Y. & Hattori, A. 1960 Effect of chromatic lights on phycobilin formation in a blue-green alga, Tolypothrix tenuis. Plant Cell Physiol., 1, 293-303. Strain(s): 37  Fujita, Y. & Hattori, A. 1962 Changes in composition of cellular material during formation of phycobilin chromoproteids in a blue-green alga, Tolypothrix tenuis. J. Biochem., 52, 38-42. Strain(s): 37  PubMed: 13895763 Fujita, Y. & Hattori, A. 1962 Photochemical interconversion between precursors of phycobilin chromoproteids in Tolypothrix tenuis. Plant Cell Physiol., 3, 209-220. Strain(s): 37  Fujita, Y. & Hattori, A. 1962 Preliminary note on a new phycobilin pigment isolated from blue-green algae. J. Biochem., 51, 89-91. Strain(s): 19,  37  PubMed: 13895764 Fujita, Y. & Hattori, A. 1963 Action spectrum of light-induced nitrite reduction in Anabaena cylindrica. J. Gen. Appl. Microbiol., 9, 257-265. Strain(s): 19  Fujita, Y. & Hattori, A. 1963 Effects of second chromatic illumination on phycobilin chromo-protein formation in chromatically preillumi-nated cells of Tolypothrix tenuis. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 431-440. Strain(s): 37  Fujita, Y. & Hattori, A. 1963 Occurrence of a purple bile pigment in phycoerythrin-rich cells of the blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 9, 253-256. Strain(s): 37  Fujita, Y. & Murano, F. 1967 Photochemical activities of sonicated lamellae of spinach chloroplasts with special reference to the action of CRS (cytochrome c reducing substance). Plant Cell Physiol., 8, 269-281. Strain(s): 19  Fujita, Y. & Murano, F. 1968 Occurrence of back flow of electrons against the action of photochemical system I in sonicated lamellar fragments. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 161-169. Strain(s): 19  Fujita, Y. & Myers, J. 1966 Some properties of the cytochrome C reducing substance, a factor for light-induced redox reaction of cytochrome C in photosynthetic lamellae. Plant Cell Physiol., 7, 599-606. Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a079212 Fujita, Y. & Suzuki, R. 1971 Studies on the Hill reaction of membrane fragments of blue-green algae I. Stabilizing effect of various media on the 2,6-dichlorophenol indophenol-Hill activity of membrane fragments obtained from Anabaena cylindrica and Anabaena variabilis. Plant Cell Physiol., 12, 641-651. Strain(s): 19,  23  Fujita, Y. & Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae III. Fluorescence characteristics of membrane fragments of Anabaena variabilis and Anabaena cylindrica. Plant Cell Physiol., 14, 249-260. Strain(s): 19,  23  Fujita, Y. & Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae IV. Carotenoid photobleaching induced by photosystem II action. Plant Cell Physiol., 14, 261-273. Strain(s): 19,  23  Fujita, Y. & Tsuji, T. 1968 Photochemically active chromoprotein isolated from the blue-green alga Anabaena cylindrica. Nature, 219, 1270-1271. Strain(s): 19  PubMed: 5677430 DOI: 10.1038/2191270a0 Fujita, Y., Ohama, H., Hattori, A. 1964 Hydrogenase activity of cell-free preparation obtained from the blue-green alga, Anabaena cylindrica. Plant Cell Physiol., 5, 305-314. Strain(s): 19  Fujita, Y., Pjon, C.-J., Suzuki, R. 1974 Studies on the Hill reaction of membrane fragments of blue-green algae V. A correlation between the solubilization of a photochemically active chromoprotein (ACP) and the inactivation of photosystem II activity in membrane fragments of Anabaena cylindrica. Plant Cell Physiol., 15, 779-787. Strain(s): 19  Fujiwara, S., Fukuzawa, H., Tachiki, A., Miyachi, S. 1990 Structure and differential expression of two genes encoding carbonic anhydrase in Chlamydomonas reinhardtii. Proc. Nati. Acad. Sci. U. S. A., 87, 9779-9783. Strain(s): 2235  PubMed: 2124702 DOI: 10.1073/pnas.87.24.9779 Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S. 2019 Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae. Plant Direct, 3, e00134 (article ID). Keywords: Cyanidioschyzon merolae; Galdieria sulphuraria; heterotroph; mixotroph; plasma membrane sugar transporter Strain(s): 3377  PubMed: 31245772 DOI: 10.1002/pld3.134 Fujiwara, T., Kanesaki, Y., Hirooka, S., Era, A., Sumiya, N., Yoshikawa, H., Tanaka, K., Miyagishima, S. 2015 A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 6, 657 (article ID). Keywords: algae; plants; homologous recombination; conditional knockdown; gene inducible system Strain(s): 3377  PubMed: 26379685 DOI: 10.3389/fpls.2015.00657 Fujiwara, T., Kuroiwa, H., Yagisawa, F., Ohnuma, M., Yoshida, Y., Yoshida, M., Nishida, K., Misumi, O., Watanabe, S., Tanaka, K., Kuroiwa, T. 2010 The coiled-coil protein VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance of Cyanidioschyzon merolae. Plant Cell, 22, 772-781. Strain(s): 3377  PubMed: 20348431 DOI: 10.1105/tpc.109.070227 Fujiwara, T., Misumi, O., Tashiro, K., Yoshida, Y., Nishida, K., Yagisawa, F., Imamura, S., Yoshida, M., Mori, T., Tanaka, K., Kuroiwa, T. 2009 Peirodic gene expression patterns duiring the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae. DNA Res., 16, 59-72. Keywords: cell cycle; microarray; mitochondria-plastid division genes; organelle division genes; Cyanidioschyzon merolae Strain(s): 3377  PubMed: 19147531 DOI: 10.1093/dnares/dsn032 Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y. 2017 Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 8, e343 (article ID). Keywords: algae, plants; photosynthetic eukaryotes; genetic modification; multiple transformation; chloramphenicol; CAT selection marker Strain(s): 3377  PubMed: 28352279 DOI: 10.3389/fpls.2017.00343 Fukuda, S., Iwamoto, K., Atsumi, M., Yokoyama, A., Nakayama, T., Ishida, K-I., Inouye, I., Shiraiwa, Y. 2014 Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J. Plant Res., 127, 79-89. Keywords: Algal phytoremediation; Bioaccumulation; Radiopollution; Radionuclide elimination; Radioactive cesium; The Fukushima 1 Nuclear Power Plant accident Strain(s): 24,  36,  71,  155,  160,  203,  233,  246,  329,  333,  391,  405,  417,  440,  487,  503,  529,  531,  538,  548,  553,  587,  597,  678,  727,  805,  843,  859,  931,  995,  1003,  1012,  1015,  1017,  1031,  1044,  1045,  1259,  1326,  1331,  1377,  1382,  1388,  1411,  1435,  1439,  1440,  1441,  1442,  1458,  1728,  1826,  1831,  1833,  1840,  1846,  1862,  1865,  1956,  2131,  2144,  2146,  2147,  2150,  2175,  2176,  2185,  2268,  2325,  2341,  2352,  2377,  2412,  2437,  2854,  2855,  2856,  2858,  2859,  2860  PubMed: 24346654 DOI: 10.1007/s10265-013-0596-9 Fukuda, S., Suzuki, I., Hama, T., Shiraiwa, Y. 2011 Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification. J. Oceanogr., 67, 17-25. Keywords: Alkalization; Calcification; Coccolithophorid; Emiliania huxleyi; Inorganic carbon; Ocean acidification; pH change; pH effect; Photosynthesis; Respriration Strain(s): 837  DOI: 10.1007/s10872-011-0001-z Fukuda, S., Suzuki, Y., Shiraiwa, Y. 2014 Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2 enrichment. Photosynth. Res., 121, 299-309. Keywords: Acidification; CO2 enrichment; Calcification; Emiliania huxleyi; pH effect; Photosynthesis Strain(s): 837  PubMed: 24500605 DOI: 10.1007/s11120-014-9976-9 Fukuda, S., Yamamoto, R., Iwamoto, K., Minoda, A. 2018 Cellular accumulation of cesium in the unicellular red alga Galdieria sulphuraria under mixotrophic conditions. J. Appl. Phycol., 30, 3057-3061. Keywords: Bioremediation; Galdieria sulphuraria; Rhodophyceae; Radioactive cesium; Biological concentration Strain(s): 3638  DOI: 10.1007/s10811-018-1525-z Fukumoto, R., Dohmae, N., Takio, K., Satoh, S., Fujii, T., Sekimoto, H. 2002 Purification and characterization of a pheromone that induces sexual cell division in the unicellular green alga Closterium ehrenbergii. Plant Physiol. Biochem., 40, 183-188. Keywords: Closterium ehrenbergii; pheromone; sexual reproduction Strain(s): 228,  229  DOI: 10.1016/S0981-9428(01)01356-0 Fukumoto, R., Fujii, T., Sekimoto, H. 1997 Detection and evaluation of a novel sexual pheromone that induces sexual cell division of Closterium ehrenbergii (Chlorophyta). J. Phycol., 33, 441-445. Keywords: Chlorophyta; Closterium ehrenbergii; conjugation; gametogenesis; gamete; pheromone; protoplast-release-inducing protein; sexual cell division Strain(s): 228,  229  DOI: 10.1111/j.0022-3646.1997.00441.x Fukumoto, R., Fujii, T., Sekimoto, H. 1998 A newly identified chemotactic sexual pheromone from Closterium ehrenbergii. Sex. Plant Reprod., 11, 81-85. Keywords: Closterium ehrenbergii; chemoattractant; conjugation; sexual pheromone; protoplast-release inducing protein Strain(s): 228,  229  DOI: 10.1007/s0049700501 Fukumoto, R., Fujii, T., Sekimoto, H. 2003 Cloning and characterization of a cDNA encoding a sexual cell division-inducing pheromone from a unicellular green alga Closterium ehrenbergii. J. Phycol., 39, 931-936. Keywords: Closterium; conjugation; pheromone; sexual reproduction; RACE-PCR Strain(s): 228,  229  DOI: 10.1046/j.1529-8817.2003.03004.x Fukumoto, T., Nishimura, T., Nagasawa, T., Kitajima, K., Iwamura, T. 1988 Exclusion chromatography with controlled-pore glass beads to isolate Chlorella chromatin and its applications. Anal. Biochem., 170, 463-471. Strain(s): 2170  PubMed: 3394945 DOI: 10.1016/0003-2697(88)90659-8 Fukuzawa, H., Fujiwara, S., Yamamoto, Y., Dionisio-Sese, M. L., Miyachi, S. 1990 cDNA cloning, sequence, and expression of carbonic anhydrase in Chlamydomonas reinhardtii: Regulation by environmental CO2 concentration. Proc. Nati. Acad. Sci. U. S. A., 87, 4383-4387. Strain(s): 2235  PubMed: 2112252 DOI: 10.1073/pnas.87.11.4383 Fukuzawa, H., Ishida, S., Miyachi, S. 1991 cDNA cloning and gene expression of carbonic anhydrase in Chlamydomonas reinhardtii. Can. J. Bot., 69, 1088-1096. Keywords: photosynthesis; light regulation; zinc; CO2-concentrating mechanism; intracellular processing Strain(s): 2235  DOI: 10.1139/b91-139 Fuller, N. J., Campbell, C., Allen, D. J., Pitt, F. D., Le Gall, F., Vaulot, D., Scanlan, D. J. 2006 Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids. Aquat. Microb. Ecol., 43, 79-93. Keywords: Photosynthetic picoeukaryotes; Plastid 16S rRNA; Arabian Sea; PCR Strain(s): 2586,  2588,  2589,  2672,  2673,  2687,  2690,  2693  DOI: 10.3354/ame043079 Furihata, T., Pomprasirt, S., Sakurai, H. 1997 Characteristics of sulfite transport by Chlorella vulgaris. Plant Cell Physiol., 38, 398-403. Keywords: Chlorella; plasma membrane; sulfite; transport Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a029182 Furusato, E., Asaeda, T., Manatunge, J. 2004 Tolerance for prolonged darkness of three phytoplankton species, Microcystis aeruginosa (Cyanophyceae), Scenedesmus quadricauda (Chlorophyceae), and Melosira ambigua (Bacillariophyceae). Hydrobiologia, 527, 153-162. Keywords: algal bloom; artificial circulation; community succession; darkness tolerance; phytoplankton Strain(s): 96,  298  DOI: 10.1023/B:HYDR.0000043198.08168.d3 Gaget, V., Welker, M., Rippka, R., de Marsac, N. T. 2015 A polyphasic approach leading to the revision of the genus Planktothrix (Cyanobacteria) and its type species, P. agardhii, and proposal for integrating the emended valid botanical taxa, as well as three new species, Planktothrix paucivesiculata sp. nov.ICNP, Planktothrix tepida sp. nov.ICNP, Planktothrix serta sp. nov.ICNP, as genus and species names with nomenclatural standing under th ICNP. Syst. Appl. Microbiol., 38, 141-158. Keywords: Polyphasic taxonomy; 16S rRNA gene; ITS; MLST; gyrB; rpoB; rpoC1; Planktothrix Anagnostidis & Komárek 1988ICN emend. gen. nov. ICNP Strain(s): 905,  928,  1266  DOI: 10.1016/j.syapm.2015.02.004 Galica, T., Borbone, N., Mareš, J., Kust, A., Caso, A., Esposito, G., Saurav, K., Hájek, J., Řeháková, K., Urajová, P., Costantino, V., Hrouzek, P. 2021 Cyanochelins, an overlooked class of widely distributed cyanobacterial siderophores, discovered by silent gene cluster awakening. Appl. Environ. Microbiol., 87, e0312820 (article ID). Strain(s): 3755  PubMed: 34132591 DOI: 10.1128/AEM.03128-20 Gao, J.-J., Zhang, L.. Peng, R.-H., Wang, B., Feng, H.-J., Li, Z.-J., Yao, Q.-H. 2021 Recombinant expression of Thermosynechococcus elongatus BP-1 glutathione S-transferase in Arabidopsis thaliana: an efficient tool for phytoremediation of thiocyanate. Biotechnol. Biotechnol. Equip., 34, 494-505. Keywords: Thiocyanate; Thermosynechococcus elongatus BP-1; Arabidopsis thaliana; transgenic; enhance phytoremediation; glutathione S-transferase; degradation Strain(s): 2098,  2134,  4103  DOI: 10.1080/13102818.2020.1779127 Gao, S., Pittman, K., Edmundson, S., Huesemann, M., Greer, M., Louie, W., Chen, P., Nobles, D., Benemann, J., Crowe, B. 2023 A newly isolated alkaliphilic cyanobacterium for biomass production with direct air CO2 capture. J. CO2 Util., 69, 102399 (article ID). Keywords: Alkaliphilic cyanobacteria; Biomass; Raceway pond; Direct air capture Strain(s): 144  DOI: 10.1016/j.jcou.2023.102399 Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Nozaki, H., Smith, D. R. 2018 Exploring the limits and causes of plastid genome expansion in volvocine green algae. Genome Biol. Evol., 10, 2248-2254. Keywords: Eudorina; genome expansion; mutational hazard hypothesis; Volvox; Yamagishiella Strain(s): 3780,  3982,  3984  PubMed: 30102347 DOI: 10.1093/gbe/evy175 Garcia, H. F. L. 2017 Mathematical modelling as a research tool in the cyanobacteria cultivation. PhD thesis, Friedrich-Alexander-Universität Erlangen-Nürnberg, Germany, 101 pp. Strain(s): 39  Garcia, N. S., Sexton, J., Riggins, T., Brown, J., Lomas, M. W., Martiny, A.C. 2018 High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions. Front. Microbiol., 9, 543 (article ID). Strain(s): 2690  PubMed: 29636735 DOI: 10.3389/fmicb.2018.00543 Gekeler, W., Grill, E., Winnacker, E.-L., Zenk, M. H. 1988 Algae sequester heavy metals via synthesis of phytochelatin complexes. Arch. Mikrobiol., 150, 197-202. Strain(s): 687  DOI: 10.1007/BF00425162 Gharaie Fathabad, S., Arumanayagam, A. S., Tabatabai, B., Chen, H., Lu, J., Sitther, V. 2019 Augmenting Fremyella diplosiphon cellular lipid content and unsaturated fatty acid methyl esters via sterol desaturase gene overexpression. Appl. Biochem. Biotechnol., 189, 1127-1140. Keywords: Alkane; Biofuel; Cyanobacteria; Sterol desaturase; Transcript abundance Strain(s): 2100,  2107,  3585  PubMed: 31168708 DOI: 10.1007/s12010-019-03055-5 Ghosh, R., Makam, R., Krishnamurthy, V. 2018 Effect of critical parameters on biomass yield from Botryococcus braunii by Response surface methodology. Chem. Sci. Rev. Lett., 7, 409-420. Keywords: Bio mass; Botryococcus Braunii; Microalgae; Response; Surface Methodology Strain(s): 2199  Giannelli, L., Yamada, H., Katsuda, T., Yamaji, H. 2015 Effects of temperature on the astaxanthin productivity and light harvesting characteristics of the green alga Haematococcus pluvialis. J. Biosci. Bioeng., 119, 345–350. Keywords: Haematococcus pluvialis; Photobioreactor; Astaxanthin; Photosynthetic efficiency Strain(s): 144  PubMed: 25441445 DOI: 10.1016/j.jbiosc.2014.09.002 Giannelli, L., Yamaji, H., Katsuda, T. 2015 A numerical model for the quantification of light/dark cycles in microalgal cultures: Air-lift and bubble-column photobioreactor analysis by means of computational fluid dynamics. J. Chem. Eng. Jpn., 48, 61-71. Keywords: Microalgae; Photobioreactor; Computational Fluid Dynamics; Flashing Light; Light Conversion Efficiency Strain(s): 144  DOI: 10.1252/jcej.14we093 Gile, G. H., Stern, R. F., James, E. R., Keeling, P. J. 2010 DNA barcoding of chlorarachniophytes using nucleomorph its sequences. J. Phycol., 46, 743-750. Keywords: Bigelowiella; Chlorarachnion; culture collections; Gymnochlora; internal transcribed spacer; Lotharella; Norrisiella; Partenskyella Strain(s): 624,  2584,  2677  DOI: 10.1111/j.1529-8817.2010.00851.x Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH4+ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611. Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism Strain(s): 25,  50,  204,  267,  843,  970,  981,  2107,  2134,  2135,  2481,  2549,  3709,  3754,  3756,  3757,  4074  PubMed: 35595516 DOI: 10.1093/jxb/erac219 Giovagnetti, V., Cataldo, M. L., Conversano, F., Brunet, C. 2010 Functional relation between growth, photosynthetic rate and regulation in the coastal picoeukaryote Phaeomonas sp. RCC 503 (Pinguiophyceae, Stramenopiles). J. Plankton Res., 32, 1501-1511. Keywords: photoacclimation; picoeukaryote; xanthophyll cycle Strain(s): 2693  DOI: 10.1093/plankt/fbq074 Godo, T., Saki, Y., Nojiri, Y., Tsujitani, M., Sugahara, S., Hayashi, S., Kamiya, H., Ohtani, S., Seike, Y. 2017 Geosmin-producing Species of Coelosphaerium (Synechococcales, Cyanobacteria) in Lake Shinji, Japan. Sci Rep., 7, 41928 (article ID). Strain(s): 4473  PubMed: 28195147 DOI: 10.1038/srep41928 Goldstein, M. 1964 Speciation and mating behavior in Eudorina. J. Protozool., 11, 317-344. Strain(s): 735  DOI: 10.1111/j.1550-7408.1964.tb01762.x Gómez, F., Qiu, D., Lopes, R.M., Lin, S. 2015 Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the Dinoflagellate Gambierdiscus (Dinophyceae). PLoS One, 10, e0119676 (article ID). Strain(s): 3451  PubMed: 25831082 DOI: 10.1371/journal.pone.0119676 Gómez-Lojero, C., Leyva-Castillo, L. E., Herrera-Salgado, P., Barrera-Rojas, J., Ríos-Castro, E., Gutiérrez-Cirlos, E. B. 2018 Leptolyngbya CCM 4, a cyanobacterium with far-red photoacclimation from Cuatro Ciénegas Basin, México. Photosynthetica, 56, 342–353. Keywords: chlorophyll f; Cuatro Ciénegas Basin; far-red light; photosynthesis; phycobilisomes. Strain(s): 30  DOI: 10.1007/s11099-018-0774-z Gómez-Martínez, D., Bengtson, J., Nilsson, A. K., Clarke, A. K., Nilsson, R. H., Kristiansson, E., Corcoll, N. 2023 Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican. Sci. Total Environ., 875, 162604 (article ID). Keywords: Acclimation; Microalgae; Transcriptomics; Diflufenican; Carotenoids Strain(s): 96,  298  PubMed: 36878298 DOI: 10.1016/j.scitotenv.2023.162604 Gontcharov, A. A. & Melkonian, M. 2011 A study of conflict between molecular phylogeny and taxonomy in the Desmidiaceae (Streptophyta, Viridiplantae): analyses of 291 rbcL sequences. Protist, 162, 253-267. Strain(s): 285,  297,  452  PubMed: 20971037 DOI: 10.1016/j.protis.2010.08.003 Gontcharov, A. A. & Watanabe, M. M. 1999 Rare and new desmids (Desmidaceae, Chlorophyta) from Japan. Phycol. Res., 47, 233-240. Keywords: desmids; new findings; new species; Japan Strain(s): 839,  840,  841,  842  DOI: 10.1046/j.1440-1835.1999.00172.x Gontcharov, A. A., Marin, B., Melkonian, M. 2003 Molecular phylogeny of conjugating green algae (Zygnemophyceae, Streptophyta) inferred from SSU rDNA sequence comparisons. J. Mol. Evol., 56, 89-104. Keywords: Green algae; Streptophyta; Zygnemophyceae; Desmids; Molecular phylogeny; SSU rDNA Strain(s): 125,  309  PubMed: 12569426 DOI: 10.1007/s00239-002-2383-4 González, M. A., Coleman, A. W., Gómez, P. I., Montoya, R. 2001 Phylogenetic relationship among various strains of Dunaliella (Chlorophyceae) based on nuclear ITS rDNA sequences. J. Phycol., 37, 604-611. Keywords: Dunaliella; internal transcribed spacer; phylogenetics; rDNA; sequencing; strains; taxonomy Strain(s): 3572,  4107  DOI: 10.1046/j.1529-8817.2001.037004604.x González-Pleitera, M., Cirésa, S., Hurtado-Gallego, J., Leganés, F., Fernández-Piñas, F., Velázquez, D. 2019 Chapter 20 - Ecotoxicological assessment of antibiotics in freshwater using cyanobacteria. In Cyanobacteria: From Basic Science to Applications, Eds. by Mishra, A. K., Tiwari, D. N., Rai, A. N., Academic Press, pp. 339-417. Keywords: Anabaena; Antibiotics; Biomarker; Bioreporter; Cyanobacteria; Ecotoxicology; Freshwater; Oxidative stress; Risk assessment Strain(s): 19,  23,  44,  107,  843  DOI: 10.1016/B978-0-12-814667-5.00020-9 Gottschling, M., Keupp, H., Plotner, J., Knop, R., Willems, H., Kirsch, M. 2005 Phylogeny of calcareous dinoflagellates as inferred from ITS and ribosomal sequence data. Mol. Phylogenet. Evol., 36, 444-455. Keywords: 5.8S rRNA; Calciodinellaceae; Internal transcribed spacer; Paleontology; Molecular systematics; Secondary structure Strain(s): 7  PubMed: 15964218 DOI: 10.1016/j.ympev.2005.03.036 Gowans, C. S. 1963 The conspecificity of Chlamydomonas eugametos and Chlamydomonas moewusii: an experimental approach. Phycologia, 3, 37-44. Strain(s): 2219  DOI: 10.2216/i0031-8884-3-1-37.1 Grauvogel, C. & Petersen, J. 2007 Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte. Gene, 396(1), 125-133. Keywords: evolution; primer design; cytosolic MVA pathway; plastid MEP pathway; Chlorophyta; Plantae; Cyanophora paradoxa Strain(s): 476  PubMed: 17433859 DOI: 10.1016/j.gene.2007.02.020 Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L. 2019 Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae. Proc. R. Soc. B-Biol. Sci., 286, 20190655 (article ID). Keywords: photosynthesis; photosynthetically usable radiation; phycobilin; resource acquisition Strain(s): 698,  702  PubMed: 31088271 DOI: 10.1098/rspb.2019.0655 Grewe, C., Griehl, C. 2008 Time- and media-dependent secondary carotenoid accumulation in Haematococcus pluvialis. Biotechnol. J., 3, 1232-1244. Keywords: Astaxanthin; Carotenoid biosynthesis; ; Haematococcus pluvialis; LC-MS; Media Strain(s): 144  PubMed: 18683169 DOI: 10.1002/biot.200800067 Grilli Caiola, M., Canini, A., Galiazzo, F., Rotilio, G. 1991 Superoxide dismutase in vegetative cells, heterocysts and akinetes of Anabaena cylindrica Lemm. FEMS Microbiol. Lett., 80, 161-166. Keywords: Anabaena cylindrica; superoxide dismutase; heterocyst; nitrogenase activity Strain(s): 19  DOI: 10.1111/j.1574-6968.1991.tb04654.x Grochau-Wright, Z. I., Hanschen, E. R., Ferris, P. J., Hamaji, T., Nozaki, H., Olson, B. J. S. C., Michod, R. E. 2017 Genetic basis for soma is present in undifferentiated volvocine green algae. J. Evol. Biol., 30, 1205–1218 Keywords: VARL domain; gene duplication; germ-soma differentiation; major transitions; multicellularity; volvocine algae Strain(s): 1861  PubMed: 28425150 DOI: 10.1111/jeb.13100 Gross, W., Schnarrenberger, C. 1995 Heterotrophic growth of two strains of the acido-thermophilic red alga Galdieria sulphuraria. Plant Cell Physiol., 36, 633-638. Keywords: Galdieria sulphuraria; Heterotrophy; Monosaccharides; Pigmentation; Rhodophyta; Sugar alchols Strain(s): 3638  DOI: 10.1093/oxfordjournals.pcp.a078803 Gross, W., Seipold, P., Schnarrenberger, C. 1997 Characterization and purification of an aldose reductase from the acidophilic and thermophilic red alga Galdieria sulphuraria. Plant Physiol., 114, 231-216. Strain(s): 3638  PubMed: 12223702 DOI: 10.1104/pp.114.1.231 Grotjohann, N. & Kowallik, W. 1989 Influence of blue light on the activity of phosphofructokinase in Chlorella kessleri. Physiol. Plant., 75, 43-46. Keywords: blue/UV-photoreceptor; Chlorella kessleri; phosphofructokinase Strain(s): 2160  DOI: 10.1111/j.1399-3054.1989.tb02061.x Grzebyk, D., Pasqualini, V., Garrido, M., Quilichini, Y., Pereto, C., Cecchi, P. 2022 Insight into the morphology and genetic diversity of the Chaetoceros tenuissimus (Bacillariophyta) species complex. Eur. J. Phycol., 57, 507-525. Keywords: Cell division; Chaetoceros tenuissimus; internal transcribed spacer (ITS); morphology; phylogeny; rDNA; ultrastructure Strain(s): 3715  DOI: 10.1080/09670262.2022.2029949 Gu, S., Dai, X., Niu, Q., Jiang, J., Liu, Y. 2021 Molecular, structural and biochemical characterization of a novel recombinant chlorophyllase from cyanobacterium Oscillatoria acuminata PCC 6304. Microb. Cell. Fact., 20, 14 (article ID). Keywords: Chlorophyllase; Oscillatoria acuminata PCC 6304; Biochemical characteristic; Substrate specifcity; Catalytic triad Strain(s): 2108  DOI: 10.1186/s12934-020-01507-w Gu, Y., Tobino, T., Nakajima, F. 2021 Determining the relative importance of dietborne and waterborne toxicity of 4-tert-butylphenol and 4-tert-octylphenol to the benthic crustacean, Heterocypris incongruens. Environ. Sci. Technol., 55, 7939–7948. Keywords: alkylphenol; toxicity test; dietborne toxicity; exposure route; Heterocypris incongruens; ISO 14371 Strain(s): 94,  797,  2170  PubMed: 34047553 DOI: 10.1021/acs.est.0c08164 Guerriero, G., Sergeant, K., Legay, S., Hausman, J. F., Cauchie, H. M., Ahmad, I., Siddiqui, K. S. 2018 Novel insights from comparative in silico analysis of green microalgal cellulases. Int. J. Mol. Sci., 19, 1782 (article ID). Keywords: cellulase; glycosyl hydrolase family 9; carbohydrate binding module (CBM); bioinformatics; RT-qPCR Strain(s): 2863  PubMed: 29914107 DOI: 10.3390/ijms19061782 Gugger, M., Lyra, C., Henriksen, P., Coute, A., Humbert, J.-F., Sivonen, K. 2002 Phylogenetic comparison of the cyanobacterial genera Anabena and Aphanizomenon. Int. J. Syst. Evol. Microbiol., 52, 1867-1880. Keywords: Anabaena; Aphanizomenon; 16S rDNA; 16S-23S rDNA; RubisCO spacer Strain(s): 81  PubMed: 12361299 DOI: 10.1099/00207713-52-5-1867 Guidi-Rontani, C., Maheswari, U., Jabbari, K., Bowler, C. 2010 Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica. New Phytol., 185, 446-458. Keywords: expressed sequence tags (ESTs); Fibrocapsa japonica; harmful algal blooms; heterokont; phylogeny; raphidophyte; stramenopile; toxicity Strain(s): 462,  560,  605,  1303  DOI: 10.1111/j.1469-8137.2009.03074.x Guillou, L. 2011 Characterization of the Parmales: much more than the resolution of a taxonomic enigma. J. Phycol., 47, 2-4. Strain(s): 2682,  3369,  3370,  3371  DOI: 10.1111/j.1529-8817.2010.00951.x Guillou, L., Chrétiennot-Dinet, M. J., Boulben, S., Moon-van der Staay, S. Y., Vaulot, D. 1999 Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): two new heterotrophic flagellates of picoplanktonic size. Protist, 150, 383-398. Strain(s): 2586,  2589  DOI: 10.1016/S1434-4610(99)70040-4 Guillou, L., Chrétiennot-Dinet, M. J., Medlin, L. K., Claustre, H., Loiseaux-de Goër, S., Vaulot, D. 1999 Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J. Phycol., 35, 368-381. Keywords: Bolidophyceae; diatoms; Heterokonta; marine picoeukaryotes; oligotrophic ocean; Stramenopiles Strain(s): 2682  DOI: 10.1046/j.1529-8817.1999.3520368.x Guillou, L., Jacquet, S., Chrétiennot-Dinet, M. J., Vaulot, D. 2001 Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol., 26, 201-207. Strain(s): 2586,  2589  DOI: 10.3354/ame026201 Guillou, L., Moon-van der Staay, S. Y., Claustre, H., Partensky, F., Vaulot, D. 1999 Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl. Environ. Microbiol., 65, 4528-4536. Strain(s): 2586,  2589,  2682,  2691  PubMed: 10508085 DOI: 10.1128/AEM.65.10.4528-4536.1999 Guionet, A., Hosseini, B., Teissié, J., Akiyama, H., Hosseini, H. 2017 A new mechanism for efficient hydrocarbon electro-extraction from Botryococcus braunii. Biotechnol. Biofuels, 10, 39 (article ID). Keywords: Green energy; Biofuel; Hydrocarbon; Extraction; Botryococcus braunii kützing; Nanosecond pulsed electric field (nsPEF) Strain(s): 836  PubMed: 28228843 DOI: 10.1186/s13068-017-0724-1 Guionet, A., Oura, K., Akiyama, H., Hosano, H. 2019 The narrow window of energy application for oil extraction by arc discharge. J. Appl. Phycol., 31, 89–96. Keywords: Botryococcus braunii; Hydrocarbons; Biofuel; Matrix; Extraction Strain(s): 836  DOI: 10.1007/s10811-018-1579-y Guo, B., Lei, C., Ito, T., Jiang, Y., Ozeki, Y., Goda, K. 2016 High-throughput accurate single-cell screening of Euglena gracilis with fluorescence-assisted optofluidic time-stretch microscopy. PLoS One, 11, e0166214 (article ID). Strain(s): 48  PubMed: 27846239 DOI: 10.1371/journal.pone.0166214 Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017 High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy. Proc. of SPIE, 10076 Keywords: high-throughput screening; biofuel; Euglena gracilis; global warming; microfluidics; optofluidics; single-cell analysis; quantitative phase microscopy Strain(s): 48  DOI: 10.1117/12.2251157 Guo, B., Lei, C., Kobayashi, H., Ito, T., Yalikun, Y., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda. K. 2017 High-throughput, label-free, single-cell, microalgal lipid screening by machine-learning-equipped optofluidic time-stretch quantitative phase microscopy. Cytom. Part A, 91, 494-502. Strain(s): 48  PubMed: 2839932 DOI: 10.1002/cyto.a.23084 Guo, Y., Zang, X., Cao, X., Zhang, F., Sun, D., Shang, M., Li, R., Yangzong, Z., Wei, X., Zhang, X. 2020 Cloning and expression of Allophycocyanin gene from Gracilariopsis lemaneiformis and studying the binding sites of phycocyanobilin on its α and β subunits. J. Appl. Phycol., 32, 2657-2671. Keywords: Gracilariopsis lemaneiformis; Rhodophyta; Allophycocyanin; Expression; Fluorescence Strain(s): 2104  DOI: 10.1007/s10811-020-02102-7 Ha, J. H., Hidaka, T., Tsuno, H. 2009 Quantification of toxic Microcystis and evolution of its dominance ratio in blooms using real-time PCR. Environ. Sci. Technol., 43, 812-818. Strain(s): 102  PubMed: 19245020 DOI: 10.1021/es801265f Ha, K., Takamura, N., Jang, M.-H. 2009 Microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish at different kairomone concentrations. Bull. Environ. Contam. Toxicol., 83, 761-765. Keywords: microcystin; kairomone; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi Strain(s): 89,  103,  107  PubMed: 19669611 DOI: 10.1007/s00128-009-9841-2 Hagino, K., Bendif, E. M., Young, J. R. Kogame, K., Probert, I., Takano, Y., Horiguchi, T., de Vardas, C., Okada, H. 2011 New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliania huxleyi (Prymnesiophyceae) from the COX1b-ATP4 genes. J. Phycol., 47, 1164-1176. Keywords: biogeography; coccolithophore; Emiliania huxleyi; mitochondrial DNA; morphotype Strain(s): 837,  838,  1000,  1311,  1312,  1313,  1314  DOI: 10.1111/j.1529-8817.2011.01053.x Hagiwara, T., Yagi, O., Takamura, Y., Sudo, R. 1984 Isolation of bacteria-free Microcystis aeruginosa from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 437-442 (in Japanese with English summary). Strain(s): 604  Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N., Bosch, T. C.G. 2018 Metabolic co-dependence drives the evolutionary ancient Hydra-Chlorella symbiosis. eLife, 7, e35122 (article ID). Keywords: Chlorella; Hydra; evolutionary biology; genome; nitrogen metabolism; symbiosis Strain(s): 2166,  2235,  2541  PubMed: 29848439 DOI: 10.7554/eLife.35122 Hamada, S., Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Ito, M. 2006 Isolation of myosin XI genes from the Closterium peracerosum-strigosum-littorale complex and analysis of their expression during sexual reproduction. J. Plant Res., 119, 105-113. Keywords: Closterium; Cytokinesis; Myosin XI; Real-time PCR; Sexual cell division; Sexual reproduction Strain(s): 65,  67,  68  PubMed: 16456621 DOI: 10.1007/s10265-005-0249-8 Hamaji, T., Ferris, J. P., Nishii, I., Nishimura, Y., Nozaki, H. 2013 Distribution of the sex-determining geneMID and molecular correspondence of mating types within the isogamous genus Gonium (Volvocales, Chlorophyta). PLoS One, 8, e64385 (article ID). Strain(s): 652,  653,  654,  655,  851,  852,  1038,  1039,  1708,  1710,  1711,  2455,  2457  PubMed: 23696888 DOI: 10.1371/journal.pone.0064385 Hamaji, T., Ferris, P. J., Coleman, A.W., Waffenschmidt, S., Takahashi, F., Nishii, I., Nozaki, H. 2008 Identification of the minus-dominance gene ortholog in the mating-type locus of Gonium pectorale. Genetics, 178, 283-294. Strain(s): 1710,  1711  PubMed: 18202374 DOI: 10.1534/genetics.107.078618 Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R. 2017 Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biol. Evol., 9, 993-999. Keywords: Eudorina; linear mitochondrial DNA; telomere; Volvox; Yamagishiella Strain(s): 3982,  3984  PubMed: 31972029 DOI: 10.1093/gbe/evx060 Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 1, 17 (article ID). Strain(s): 3982,  3983,  3984,  3985,  4018,  4100  DOI: 10.1038/s42003-018-0019-5 Hamaji, T., Mogi, Y., Ferris, P. J., Mori, T., Miyagishima, S., Kabeya, Y., Nishimura, Y., Toyoda, A., Noguchi, H., Fujiyama, A., Olson, B. J. S. C., Marriage, T. N., Nishii, I., Umen, J. G. Nozaki, H. 2016 Sequence of the Gonium pectorale mating locus reveals a complex and dynamic history of changes in volvocine algal mating haplotypes. G3-Genes Genomes Genet., 6, 1179-1189. Keywords: Gonium; Chlamydomonas; Volvox; mating locus; evolution; Genetics of Sex Strain(s): 2863  PubMed: 26921294 DOI: 10.1534/g3.115.026229 Hamaji, T., Smith, DR., Noguchi, H., Toyoda, A., Suzuki, M., Kawai-Toyooka, H., Fujiyama, A., Nishii, I., Marriage, T., Olson, B. J. S. C., Nozaki, H. 2013 Mitochondrial and plastid genomes of the colonial green alga Gonium pectorale give insights into the origins of organelle DNA architecture within the Volvocales. PLoS One, 8, e57177 (article ID). Strain(s): 2863  PubMed: 23468928 DOI: 10.1371/journal.pone.0057177 Hamamoto, Y. & Honda, D. 2019 Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem. PLoS One, 14, e0208941 (article ID). Strain(s): 324,  3712  PubMed: 30625142 DOI: 10.1371/journal.pone.0208941 Hamana, K. 2008 Cellular polyamines of phototrophs and beterotrophs belonging to the lower eukaryotic phyla Cercozoa, Euglenozoa, Heterokonta and Metamonada. J. Gen. Appl. Microbiol., 54, 135-140. Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine Strain(s): 9,  15,  71,  86,  118,  253,  323,  330,  333,  548,  603,  622,  1002,  1003,  1011,  1044,  1303,  1380,  1440,  1443,  1444  PubMed: 18497488 DOI: 10.2323/jgam.54.135 Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240. Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta Strain(s): 8,  274,  276,  277,  282,  353,  388,  699,  706,  715,  741,  763,  764,  1016,  1017,  1032,  1036,  1332,  1441,  1456,  1457,  1462,  1463,  1467,  1473,  3377  PubMed: 17116972 DOI: 10.2323/jgam.52.235 Hamana, K., Aizaki T., Arai, E., Saito, A., Uchikata, K., Ohnishi, H. 2004 Distribution of norspermidine s a cellular polyamine within micro green algae including non-photosynthetic achlorophyllous Polytoma, Polytomella, Prototheca and Helicosporidium. J. Gen. Appl. Microbiol., 50, 289-295. Keywords: Chlorophyta; green alga; Helicosporidium; norspermidine; polyamine; Polytoma; Polytomella; Prototheca Strain(s): 18,  251,  254,  255,  296,  329,  483,  486,  536  Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─ Microb. Resour. Syst., 32, 179-186. Keywords: cyanobacteria; homospermidine; polyamine; thermospermine Strain(s): 2086,  2087,  2134,  2412,  2539,  3373  Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62. Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12,  47,  48,  253,  274,  276,  277,  282,  286,  304,  331,  381,  387,  463,  623,  624,  699,  706,  715,  741,  1443,  2145,  2146,  2149,  2351,  2433,  2535,  2584,  2588,  2635,  2677,  2716,  2728,  2860,  3576,  3745,  4060,  4109,  4280,  4391,  4392  Hamana, K., Furuchi, T., Hayashi, H., Uemura, T., Niitsu, M. 2023 Additional polyamine analysis of the algae belonging to the phyla Glaucophyta, Rhodophyta and Chlorophyta. ─Polyamine analysis of algae V─ Microb. Resour. Syst., 39, 33-40. Keywords: alga; Chlorophyta; Glaucophyta; polyamine; Rhodophyta Strain(s): 226,  250,  254,  550,  551,  626,  1298,  1332,  1703,  1836,  2137,  2163,  2164,  2165,  2166,  2252,  2353,  2894,  3377,  3645,  3867,  3891,  3892,  4107,  4390,  4452  Hamana, K., Furuchi, T., Nakamura, T., Hayashi, H., Niitsu, M. 2017 Occurrence of penta-amines, hexa-amines and N-methylated polyamines in unicellular eukaryotic organisms belonging to the phyla Heterokontophyta and Labyrinthulomycota of the subdomain Stramenopiles. J. Gen. Appl. Microbiol., 62, 320-325. Keywords: Bioaccumulation; clam Corbicula leana; cyanotoxins; elimination; Microcystis Strain(s): 2535  PubMed: 27773915 DOI: 10.2323/jgam.2016.05.001 Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine analysis of unicellular, colonial, and multicellular green algae —Detection of aminobutylcadaverine, N1-aminopentylspermidine, N8-aminopentylspermidine, and penta-amines.— Microb. Resour. Syst., 34, 73-82. Keywords: aminobutylcadaverine; aminopentylspermidine; green alga; penta-amine; polyamine; thermospermine Strain(s): 18,  35,  242,  691,  735,  1271,  1278,  2185,  2187,  2235,  2261,  2540,  2572,  3983  Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine distribution profiles in unicellular and multicellular red algae (phylum Rhodophyta) —Detection of 1,6-diaminohexane, aminobutylcadaverine, canavalmine and aminopropylcanavalmine.— Microb. Resour. Syst., 34, 83-91. Keywords: aminobutylcadaverine; aminopropylcanavalmine; canavalmine; diaminohexane; polyamine; red algae; Rhodophyta Strain(s): 551,  1032,  1572,  1957,  2138,  2140,  2636,  2662,  2742  Hamana, K., Kobayashi, M., Yokota, A., Sekiguchi, H., Niitsu, M. 2008 Cellular polyamine profiles in cyanobacteria. Microbiol. Cult. Coll., 24, 3-8. Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine Strain(s): 26,  33,  36,  46,  206,  208,  230,  267,  268,  305,  361,  416,  433,  434,  481,  507,  597,  598,  931,  932,  1031,  2115,  2133,  2135  Hamana, K., Matsuzaki, S., Niitsu, M., Samejima, K., Nagashima, H. 1990 Polyamines of unicellular thermoacidophilic red alga Cyanidium caldarium. Phytochemistry, 29, 377-380. Keywords: Cyanidium caldarium; Rhodophyta; red algae; polyamines; chemotaxonomy Strain(s): 250,  2137,  3891  DOI: 10.1016/0031-9422(90)85082-Q Hamana, K., Miyagawa, K., Matsuzaki, S. 1983 Occurrence of syn-homospermidine as the major polyamine in nitrogen-fixing cyanobacteria. Biochem. Biophys. Res. Commun., 112, 606-613. Strain(s): 19,  37,  39,  2129,  3275  PubMed: 6405746 DOI: 10.1016/0006-291X(83)91507-3 Hamana, K., Niitsu, M., Hayashi, H. 2013 Occurrence of homospermidine and thermospermine as a cellular polyamine in unicellular chlorophyte and multicellular charophyte green algae J. Gen. Appl. Micobiol., 59, 313-319. Keywords: green alga; homospermidine; polyamine; thermospermine Strain(s): 18,  151,  160,  255,  296,  306,  360,  363,  640,  722,  836,  1409,  1410,  1411,  1419,  1837,  2164,  2199,  3374  PubMed: 24005181 DOI: 10.2323/jgam.59.313 Hamana, K., Sakamoto, A., Nishina, M., Niitsu, M. 2004 Cellular polyamine profile of the phyla Dinophyta, Apicomplexa, Ciliophora, Euglenozoa, Cercozoa and Heterokonta. J. Gen. Appl. Microbiol., 50, 297-303. Keywords: Apicomlexa; Cercozoa; Ciliophora; Dinophyta; Euglenozoa; Heterokonta; norspermidine; polyamine Strain(s): 12,  286,  304,  331,  381,  387,  463  PubMed: 15747233 DOI: 10.2323/jgam.50.297 Hamano, R., Shoumura, S., Takeda, Y., Yamazaki, T., Hirayama, K., Hanada, Y., Mayama, S., Takemura, M., Lin, H.-J., Umemura, K. 2021 Sinking of four species of living diatom cells directly observed by a “tumbled” optical microscope. Microsc. microanal., 27, 1154-1160. Strain(s): 589  PubMed: 34294188 DOI: 10.1017/S1431927621012150 Han, J.-I., Yao, J., Lee, C., Park, J., Choi, Y.-E. 2019 A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform. Algal Res., 39, 101464. Keywords: Haematococcus lacustris; Microfabricated structure; Astaxanthin; ROS; Mechanical stimulation Strain(s): 144  DOI: 10.1016/j.algal.2019.101464 Han, S.-I., Chang, S. H., Lee, C., Jeon, M. S., Heo, Y. M., Kim, S. 2020 Astaxanthin biosynthesis promotion with pH shock in the green microalga, Haematococcus lacustris. Bioresour. Technol., 314, 123725 (article ID). Keywords: Haematococcus lacustris; Astaxanthin; pH shock; Biological change; Mass culture Strain(s): 144  PubMed: 32615445 DOI: 10.1016/j.biortech.2020.123725 Han, S.-I., Jeon, M. S., Ahn, J.-W., Choi, Y.-E. 2022 Establishment of ultrasonic stimulation to enhance growth of Haematococcus lacustris. Bioresour. Technol., 360, 127525 (article ID). Keywords: Haematococcus lacustris; Astaxanthin; Ultrasonication; Cell division Strain(s): 144  PubMed: 35760247 DOI: 10.1016/j.biortech.2022.127525 Hanagata, N., Karube, I., Chihara, M., Silva, P. C. 1998 Reconsideration of the taxonomy of ellipsoidal species of Chlorella (Trebouxiophyceae, Chlorophyta), with establishment of Watanabea gen. nov. Phycol. Res., 46, 221-229. Keywords: Chlorella saccharophila; ellipsoidal species of Chlorella; pyrenoid-lacking Chlorella-like algae: Watanabea gen. et sp. nov. Strain(s): 2189  DOI: 10.1111/j.1440-1835.1998.tb00117.x Hanazato, T. 1991 Interrelations between Microcystis and Cladocera in the highly eutrophic Lake Kasumigaura, Japan. Int. Revue ges. Hydrobiol., 76, 21-36. Keywords: Microcystis; Cladocera; toxicity; food chain; Lake Kasumigaura Strain(s): 44,  298,  299  DOI: 10.1002/iroh.19910760104 Handa, S., Nakahara, M., Tsubota, H., Deguchi, H., Nakano, T. 2003 A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res., 51, 203-210. Keywords: aerial algae; molecular phylogeny; Stichococcus ampulliformis sp. nov.; Trebouxiophyceae; 18SrRNA gene Strain(s): 996  DOI: 10.1046/j.1440-1835.2003.00311.x Handa, S., Nakahara-Tsubota, M., Shoda, I., Mizobuchi, A., Nakano, T., Tsubota, H. 2023 Trentepohlia brevicellulis comb. et stat. nov. (Trentepohliaceae, Ulvophyceae) found in Japan. Phycol. Res., 72, 12-26. Keywords: 18S rDNA; aerial algae; molecular phylogeny; morphology; Trentepohlia bosseae var. brevicellulis Strain(s): 2644,  2645,  2646,  2647,  2649,  2650,  2651,  2652,  2653,  2654,  2655,  2656,  2657,  2658  DOI: 10.1111/pre.12537 Hang, L. T., Mori, K., Tanaka, Y., Morikawa, M., Toyama, T. 2020 Enhanced lipid productivity of Chlamydomonas reinhardtii with combination of NaCl and CaCl2 stresses. Bioprocess. Biosyst. Eng., 43, 971–980. Keywords: Chlamydomonas reinhardtii; NaCl; CaCl2; Lipid accumulation; Biofuel production Strain(s): 2235  PubMed: 32008095 DOI: 10.1007/s00449-020-02293-w Hang, L. T., Mori, K., Toyama, T. 2020 Enhanced biomass and lipid production capacity of Chlamydomonas reinhardtii under mixotrophic cultivation using sewage effluent and waste molasses. Jpn. J. Water Treat. Biol., 56, 57-66. Keywords: Chlamydomonas reinhardtii; lipid production; mixotrophy; sewage effluent; organic waste Strain(s): 2235  DOI: 10.2521/jswtb.56.57 Hano, T. & Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID). Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase Strain(s): 3715  PubMed: 31499295 DOI: 10.1016/j.jchromb.2019.121779 Hano, T. & Tomaru, Y. 2023 Chronological age-related metabolome responses in the dinoflagellate Karenia mikimotoi, can predict future bloom demise. Commun. Biol., 6, 273 (article ID). Strain(s): 3715  PubMed: 36922623 DOI: 10.1038/s42003-023-04646-z Hanschen, E. R., Davison, D. R., Ferris, P. J., Michod, R. E. 2018 On the rediscovery of Volvox perglobator (Volvocales, Chlorophyceae) and the evolution of outcrossing from self-fertilization. Evol. Ecol. Res., 19, 299-318. Keywords: homothallism; phylogenetics; reversion; self-fertilization; sexual reproduction; volvocine green algae Strain(s): 289,  421,  456,  458,  460,  474,  522,  541,  543,  544,  545,  564,  566,  568,  569,  571,  572,  574,  578,  582,  653,  732,  751,  851,  856,  872,  876,  877,  878,  880,  882,  1038,  1122,  1140,  1148,  1156,  1157,  1362,  1708,  1711,  1713,  1859,  2457,  2569,  2738,  3382,  3388,  3780,  3782,  3986,  4145,  4258,  4259,  4260  Hanschen, E. R., Ferris, P. J., Michod, R. E. 2014 Early evolution of the genetic basis for soma in the Volvocaceae. Evolution, 68, 2014-2025. Keywords: Gene duplication; germ-soma differentiation; major transitions; multicellularity; regA; Volvox Strain(s): 2739  PubMed: 4689915 DOI: 10.1111/evo.12416 Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Multicellularity drives the evolution of sexual traits. Am. Nat., 192, E93-E10. Keywords: sex; volvocine green algae; multicellularity; ancestral state; reconstruction; anisogamy; sexual dimorphism Strain(s): 289,  418,  421,  456,  458,  460,  522,  541,  543,  544,  545,  564,  566,  568,  569,  571,  572,  574,  578,  582,  653,  732,  751,  851,  856,  857,  872,  875,  876,  877,  878,  880,  882,  883,  891,  892,  1038,  1362,  1711,  1713,  2457,  2569,  2738,  3382,  3388,  3780,  3782  PubMed: 30125231 DOI: 10.1086/698301 Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Repeated evolution and reversibilityof self-fertilization in the volvocinegreen algae. Evolution, 72, 386-398. Keywords: Haploid; phylogenetics; self-fertilization; sex; sexual reproduction; volvocine green algae Strain(s): 289,  418,  456,  458,  460,  541,  543,  544,  545,  564,  566,  568,  569,  571,  572,  574,  578,  582,  653,  732,  851,  856,  857,  872,  875,  876,  877,  878,  880,  882,  883,  891,  892,  1038,  1362,  1711,  1713,  2457,  2569,  2738,  3382,  3388,  3780,  3782  PubMed: 29134623 DOI: 10.1111/evo.13394 Hanschen, E. R., Marriage, T.N., Ferris, P.J., Hamaji, T., Toyoda, A., Fujiyama,A., Neme,R., Noguchi,H., Minakuchi, Y., Suzuki, M., Kawai-Toyooka, H., Smith, D.R., Sparks, H., Anderson, J., Bakaric, R., Luria, V., Karger, A., Kirschner, M.W., Durand, P.M., Michod, R.E., Nozaki, H., Olson, B.J. 2016 The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat. Commun., 7, 11370 (article ID). Strain(s): 2863  PubMed: 27102219 DOI: 10.1038/ncomms11370 Hara, Y. 1990 Chattonella ovata Y. Hara et Chihara mss. In Red Tide Organisms in Japan - An Illustrated Taxonomic Guide, Eds. by Fukuyo, Y., Takano, H., Chihara, M. & Matsuoka, K., Uchida Rokakuho, Tokyo, pp. 340-341 (in Japanese with English summary). Strain(s): 603  Hara, Y. & Chihara, M. 1982 Ultrastructure and taxonomy of Chattonella (Class Raphidophyceae) in Japan. Jpn. J. Phycol. (Sôrui), 30, 47-56 (in Japanese with English summary). Keywords: Chattonella; Chattonella marina comb. nov.; Raphidophyceae; red tides; taxonomy; ultrastructure Strain(s): 161  Hara, Y., Doi, K., Chihara, M. 1994 Four new species of Chattonella (Raphidophyceae, Chromophyta) from Japan. Jpn. J. Phycol. (Sôrui), 42, 407-420. Keywords: Chattonella; C. globosa; C. minima; C. ovata; C. verruculosa; Raphidophyceae; red tide organisms; taxonomy Strain(s): 118,  161,  603,  670,  849  Hara, Y., Inouye, I., Chihara, M. 1985 Morphology and ultrastructure of Olisthodiscus luteus (Raphidophyceae) with special reference to the taxonomy. Bot. Mag. Tokyo, 98, 251-262. Keywords: Heterosigma; Olisthodiscus luteus; Raphidophyceae; red tide flagellate; taxonomy of Olisthodiscus; ultrastructure of Olisthodiscus Strain(s): 15  DOI: 10.1007/BF02488775 Harada, K-I., Ozaki, K., Tsuzuki, S., Kato, H., Hasegawa, M., Kuroda, E. K., Arii, S., Tsuji, K. 2009 Blue color formation of cyanobacteria with b-cyclocitral. J. Chem. Ecol., 35, 1295-1301. Keywords: b-cyclocitral; cyanobacteria; lysis; blue color formation; acid stress Strain(s): 73,  102,  103,  112,  298,  611,  808  PubMed: 19936836 DOI: 10.1007/s10886-009-9706-5 Harada, N., Hirose, Y., Chihong, S., Kurita, H., Sato, M., Onodera, J., Murata, K., Itoh, F. 2021 A novel characteristic of a phytoplankton as a potential source of straight-chain alkanes. Sci Rep, 11, 14190 (article ID). Strain(s): 1001,  2779,  2780,  3367  PubMed: 34276049 DOI: 10.1038/s41598-021-93204-w Harada, R., Hirakawa, Y., Yabuki, A., Kashiyama, Y., Maruyama, M., Onuma, R., Soukal, P., Miyagishima, S., Hampl, V., Tanifuji, G., Inagaki, Y. 2020 Inventory and evolution of mitochondrion-localized family a DNA polymerases in Euglenozoa. Pathogens, 9, 257 (article ID). Keywords: DNA replication; family A DNA polymerase; plant and protist organellar DNA polymerase; Trypanosomatida; Kinetoplastea; Diplonemea; Euglenida; Prokinetoplastina Strain(s): 381  PubMed: 32244644 DOI: 10.3390/pathogens9040257 Haraguchi, Y. & Shimizu, T. 2021 Microalgal culture in animal cell waste medium for sustainable 'cultured food' production. Arch. Microbiol., 203, 5525–5532. Keywords: Algal technology; Animal cells; Cultured food; Metabolism; Sustainability Strain(s): 2170  PubMed: 34426852 DOI: 10.1007/s00203-021-02509-x Haraguchi, Y. & Shimizu, T. 2021 Three-dimensional tissue fabrication system by co-culture of microalgae and animal cells for production of thicker and healthy cultured food. Biotechnol. Lett., 43, 1117–1129. Strain(s): 2170  PubMed: 33689062 DOI: 10.1007/s10529-021-03106-0 Harashima, A., Watanabe, M., Fujishiro, I. 1988 Evolution of bioconvection patterns in a culture of motile flagellates. Phys. Fluids, 31, 764-775. Strain(s): 6  DOI: 10.1063/1.866812 Hariganeya, N., Tanimoto, Y., Yamaguchi, H., Nishimura, T., Tawong, W., Sakanari, H., Yoshimatsu, T., Sato, S., Preston, C. M., Adachi, M. 2013 Quantitative PCR method for enumeration of cells of cryptic species of the toxic marine dinoflagellate Ostreopsis spp. in Coastal Waters of Japan. PLoS One, 8, e57627 (article ID). Strain(s): 4118  PubMed: 23593102 DOI: 10.1371/journal.pone.0057627 Harke, M. J., Berry, D. L., Ammerman, J. W., Gobler, C. J. 2012 Molecular response of the bloom-forming cyanobacterium, Microcystis aeruginosa, to phosphorus Limitation. Microb. Ecol., 63, 188-198. Strain(s): 843  PubMed: 21720829 DOI: 10.1007/s00248-011-9894-8 Harke, M. J., Jankowiak, J. G., Morrell, B. K., Gobler, C. J. 2017 Transcriptomic responses in the bloom-forming cyanobacterium Microcystis 2 induced during exposure to zooplankton. Appl. Environ. Microbiol., 83, e02832-16 (article ID). Keywords: microcystis; RNA-Seq; transcriptome; grazing Strain(s): 843  PubMed: 28003198 DOI: 10.1128/AEM.02832-16 Harmon, J., Mikami, H., Kanno, H., Ito, T., Goda, K. 2020 Accurate classification of microalgae by intelligent frequency-division-multiplexed fluorescence imaging flow cytometry. OSA Continuum, 3, 430-440. Strain(s): 2293,  3640,  4141  DOI: 10.1364/OSAC.387523 Hase, E., Mihara, S., Otsuka, H. 1959 An additional note on the nature of sulfur-containing peptide nucleotide complex obtained from Chlorella and yeast. J. Gen. Appl. Microbiol., 5, 43-50. Strain(s): 2170  DOI: 10.2323/jgam.5.43 Hase, E., Mihara, S., Otsuka, H., Tamiya, H. 1959 Sulfur-containing peptide-nucleotide complex isolated from Chlorella and yeast cells. Arch. Biochem. Biophys., 83, 170-177. Strain(s): 2170  PubMed: 13662003 DOI: 10.1016/0003-9861(59)90021-9 Hase, E., Mihara, S., Tamiya, H. 1960 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. I. Plant Cell Physiol., 1, 131-142. Strain(s): 2170  Hase, E., Mihara, S., Tamiya, H. 1960 Some data on the nature of sulfur-containing peptide-nucleotide compounds obtained from Chlorella cells at different developmental stages in their life cycle. J. Gen. Appl. Microbiol., 6, 61-67. Strain(s): 2170  DOI: 10.2323/jgam.6.61 Hase, E., Mihara, S., Tamiya, H. 1960 Sulfur-containing deoxypentose polynucleotides obtained from Chlorella cells. Biochim. Biophys. Acta, 39, 381-382. Strain(s): 2170  DOI: 10.1016/0006-3002(60)90187-6 Hase, E., Mihara, S., Tamiya, H. 1961 Capabilities of various sulfur substances in inducing the cell division of Chlorella arrested by sulfur deficiency. J. Gen. Appl. Microbiol., 7, 173-176. Strain(s): 2170  DOI: 10.2323/jgam.7.173 Hase, E., Mihara, S., Tamiya, H. 1961 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. II. Plant Cell Physiol., 2, 9-24. Strain(s): 2170  Hase, E., Miyachi, S., Mihara, S. 1963 A preliminary note on the phosphorus compounds in chloroplast and volutin granules isolated from Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 619-626. Strain(s): 2170  Hase, E., Morimura, Y., Mihara, S., Tamiya, H. 1958 The role of sulfur in the cell division of Chlorella. Arch. Mikrobiol., 32, 87-95. Strain(s): 2170  DOI: 10.1007/BF00409966 Hase, E., Morimura, Y., Tamiya, H. 1957 Some data on the growth physiology of Chlorella studied by the technique of synchronous culture. Arch. Biochem. Biophys., 69, 149-165. Strain(s): 2170  PubMed: 13445189 DOI: 10.1016/0003-9861(57)90482-4 Hase, E., Moriyama, Y., Tamiya, H. 1960 A short remark on the role of sulfur in the cell division of Chlorella. J. Gen. Appl. Microbiol., 6, 68-69. Strain(s): 2170  DOI: 10.2323/jgam.6.68 Hase, E., Otsuka, H., Mihara, S., Tamiya, H. 1959 Role of sulfur in the cell division of Chlorella, studied by the technique of synchronous culture. Biochim. Biophys. Acta, 35, 180-189. Strain(s): 2170  PubMed: 13851937 DOI: 10.1016/0006-3002(59)90346-4 Hasegawa, H., Maki, T., Asano, K., Ueda, K., Ueda, K. 2004 Detection of iron(III)-binding ligands originating from marine phytoplankton using cathodic stripping voltammetry. Anal. Sci., 20, 89-93. Strain(s): 1,  16  PubMed: 14753263 DOI: 10.2116/analsci.20.89 Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A. 2018 Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae. J. Appl. Phycol., 30 2215-2225. Keywords: Microalgae; Growth; Fe uptake; APCs; Chelating ligands Strain(s): 16  DOI: 10.1007/s10811-018-1462-x Hasegawa, M., Nishizawa, A., Tsuji, K., Kimura, S., Harada, K. 2012 Volatile organic compounds derived from 2-keto-acid decarboxylase in Microcystis aeruginosa. Microbes Environ., 27, 525-528. Keywords: cyanobacteria; volatile organic compounds; 3-methyl-1-butanol; 2-keto-acid decarboxylase; Microcystis Strain(s): 843  PubMed: 23047148 DOI: 10.1264/jsme2.ME12099 Hasegawa, M., Yoshida, T., Yabuta, M., Terazima, M., Kumazaki, S. 2011 Anti-Stokes fluorescence spectra of chloroplasts in Parachlorella kessleri and maize at room temperature as characterized by near-infrared continuous-wave laser fluorescence microscopy and absorption microscopy. J. Phys. Chem. B, 115, 4184-4194. Strain(s): 2160  PubMed: 21417246 DOI: 10.1021/jp111306k Hashimoto, H. & Murakami, S. 1982 Changes in morphology and ultrastructure of chloroplast along its division cycle in Euglena gracilis cultured synchronously under photoautotrophic condition. Scientific Papers of the College of General Education, Univ. of Tokyo, 32, 55-64. Strain(s): 48  Hashimoto, H. & Murakami, S. 1982 Chloroplast replication and loss of chloroplast DNA induced by nalidixic acid in Euglena gracilis. Cell Struct. Funct., 7, 111-120. Strain(s): 48  DOI: 10.1247/csf.7.111 Hashimoto, H. & Murakami, S. 1983 Effects of cycloheximide and chloramphenicol on chloroplast replication in synchronously dividing cultured cells of Euglena gracilis. New Phytol., 94, 521-529. Strain(s): 48  DOI: 10.1111/j.1469-8137.1983.tb04861.x Hashimoto, K., Uchida, H., Nishimura, T., Oikawa, H., Funaki, H., Honma, C., Yamaguchi, H., Suzuki, T., Adachi, M. 2021 Determination of optimal culture conditions for toxin production by a Prorocentrum limaHarmful Algae, 103, 102025 (article ID). Strain(s): 4558  PubMed: 33980453 DOI: 10.1016/j.hal.2021.102025 Hashizume, M., Yoshida, M., Demura, M., Watanabe, M. M. 2020 Culture study on utilization of phosphite by green microalgae. J. Appl. Phycol., 32, 889–899. Keywords: Phosphite utilization; Chlorella vulgaris; Coccomyxa subellipsoidea Strain(s): 2166,  2170,  2280  DOI: 10.1007/s10811-020-02088-2 Hasunuma, T., Kikuyama, F., Matsuda, M., Aikawa, S., Izumi, Y., Kondo, A. 2013 Dynamic metabolic profiling of cyanobacterial glycogen biosynthesis under conditions of nitrate depletion. J. Exp. Bot., 64, 2943-2954. Keywords: 13C; cyanobacteria; glycogen; in vivo labelling; metabolic turnover; metabolomics Strain(s): 39  PubMed: 23658429 DOI: 10.1093/jxb/ert134 Hata, N., Ogbonna, J. C., Hasegawa, Y., Taroda, H., Tanaka, H. 2001 Production of astaxanthin by Haematococcus pluvialis in a sequential heterotrophic-photoautotrophic culture. J. Appl. Phycol., 13, 395-402. Keywords: astaxanthin; carotenoids; Haematococcus pluvialis; heterotrophic; photoautotrophic; two phase culture Strain(s): 144  DOI: 10.1023/A:1011921329568 Hatakeyama, S., Fukushima, S., Kasai, F., Shiraishi, H. 1994 Assessment of herbicide effects on algal production in the Kokai River (Japan) using a model stream and Selenastrum bioassay. Ecotoxicology, 3, 143-156. Keywords: herbicides; effects; algal production; algal community; channel carrying river water; bioassay; pesticide analysis Strain(s): 35  DOI: 10.1007/BF00143411 Hatano, S. 1978 Studies on frost hardiness in Chlorella ellipsoidea: Effects of antimetabolites, surfactants, hormones, and sugars on the hardening process in the light and dark. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 175-196. Strain(s): 2170  Hatano, S. & Kabata, K. 1982 Transition of lipid metabolksm in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 145-156. Strain(s): 2170  Hatano, S., Akashi, H., Nogata, Y., Yoshimoto, M. 1987 Fatty acid synthetase system in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness , Ed. by Li, P. H., Alan R. Liss, Inc., New York, pp. 101-115. Strain(s): 2170  Hatano, S., Hara, Y., Takahashi, M. 1983 Preliminary study on the effects of photoperiod and nutrients on the vertical migratory behavior of a red tide flagellate, Heterosigma akashiwo. Jpn. Jpn. J. Phycol. (Sôrui), 31, 263-269 (in Japanese with English summary). Keywords: Heterosigma akashiwo; nutrients; photoperiod; vertical migration Strain(s): 6  Hatano, S., Joh, T., Miyamoto, T., Yoshimoto, M. 1992 Preparation of protoplasts from Chlorella ellipsoidea C-27. Plant Cell Physiol., 33, 651-655. Keywords: cell wall-lytic enzyme; chitosanase; Chlorella ellipsoidea C-27; protoplast Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a078301 Hatano, S., Kabata, K., Sadakane, H. 1981 Transition of lipid synthesis from chloroplasts to a cytoplasmic system during hardening in Chlorella ellipsoidea. Plant Physiol., 67, 216-220. Strain(s): 687,  2170  PubMed: 16661649 DOI: 10.1104/pp.67.2.216 Hatano, S., Kabata, K., Yoshimoto, M., Sadakane, H. 1982 Accumulation of free fatty acid during hardening of Chlorella ellipsoidea. Plant Physiol., 70, 1173-1177. Strain(s): 2170  PubMed: 16662634 DOI: 10.1104/pp.70.4.1173 Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. I. Development of frost hardiness of Chlorella ellipsoidea in cynchronous culture. Plant Cell Physiol., 17, 451-458. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a075298 Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. II. Effects of inhibitors of RNA and protein synthesis and surfactants on the process of hardening. Plant Cell Physiol., 17, 643-651. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a075320 Hattori, A. 1957 Studies on the metabolism of urea and other nitrogenous compounds in Chlorella ellipsoidea. J. Biochem., 44, 253-273. Strain(s): 2170  Hattori, A. & Fujita, Y. 1959 Crystalline phycobilin chromoproteids obtained from a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 633-644. Strain(s): 37  DOI: 10.1093/jb/46.5.633 Hattori, A. & Fujita, Y. 1959 Effect of pre-illumination on the formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 1259-1261. Strain(s): 37  Hattori, A. & Fujita, Y. 1959 Formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis, as induced by illumination with colored lights. J. Biochem., 46, 521-524. Strain(s): 37  Hattori, A. & Fujita, Y. 1959 Spectroscopic studies on the phycobilin pigments obtained from blue-green and red algae. J. Biochem., 46, 903-909. Strain(s): 37  Hattori, A. & Uesugi, I. 1968 Ferredoxin-dependent photoreduction of nitrate and nitrite by subcellular preparations of Anabaena cylindrica. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 201-205. Strain(s): 19  Hautala, H., Lamminmäki, U., Spoof, L., Nybom, S., Meriluoto, J., Vehniäinen, M. 2013 Quantitative PCR detection and improved sample preparation of microcystin-producing Anabaena, Microcystis and Planktothrix. Ecotox. Environ. Safe., 87, 49-56. Keywords: Microcystin; Cyanobacteria; Quantitative PCR; mcyB; Sample prepararion Strain(s): 107  DOI: 10.1016/j.ecoenv.2012.10.008 Hayakawa, T., Akita, Y., Arai, F. 2018 Parallel trapping of single motile cells based on vibration‑induced flow. Microfluid. Nanofluid., 22, 42 (article ID). Keywords: Acoustofluidics; Cell manipulation; On-chip cell Manipulation; Vibration-induced flow; Motile cells Strain(s): 48  DOI: 10.1007/s1040 4-018-2062-4 Hayama, M., Nakada, T., Hamaji, T., Nozaki, H. 2010 Morphology, molecular phylogeny and taxonomy of Gonium maiaprilis sp. nov. (Goniaceae, Chlorophyta) from Japan. Phycologia, 49, 221-234. Keywords: Chlorophyceae; Goniaceae; Gonium; Gonium maiaprilis sp. nov.; ITS; molecular phylogeny; morphology; rbcL; reproduction; taxonomy Strain(s): 2455,  2456,  2457,  2458,  2459,  2460,  2461  DOI: 10.2216/PH09-56.1 Hayashi, S., Jang, J. E., Itoh, K., Suyama, K., Yamamoto, H. 2011 Construction of river model biofilm for assessing pesticide effects. Arch. Environ. Contam. Toxicol., 60, 44-56. Strain(s): 71,  803  PubMed: 20422166 DOI: 10.1007/s00244-010-9531-4 Hayashi, S., Ohtani, S., Godo, T., Nojiri, Y., Saki, Y., Esumi, T., Kamiya, H. 2019 Identification of geosmin biosynthetic gene in geosmin-producing colonial cyanobacteria Coelosphaerium sp. and isolation of geosmin non-producing Coelosphaerium sp. from brackish Lake Shinji in Japan. Harmful Algae, 84, 19-26. Keywords: Geosmin; Geosmin synthase gene; Coelosphaerium sp.Geosmin-producing and non-producing strains; Lake Shinji Strain(s): 4473,  4474,  4475  PubMed: 31128804 DOI: 10.1016/j.hal.2019.01.010 Hayashi, T., Otaki, R., Hirai, K., Tsuzuki, M., Sato, N. 2017 Optimization of seawater-based triacylglycerol accumulation in a freshwater green alga, Chlorella kessleri, through simultaneous imposition of loweredtemperature and enhanced-light intensity. Algal Res., 28, 100-107. Keywords: Chlorella kessleri; Freshwater green algae; Low temperature; Moderate light; Seawater; Triacylglycerol Strain(s): 2152  DOI: 10.1016/j.algal.2017.10.016 Hayashida, G., Schneider, C., Espíndola, L., Arias, D., Riquelme, C., Wulff-Zottele, C., Díaz-Palma, P., Rivas, M. 2017 Characterization of a Chlorophyta microalga isolated from a microbial mat in Salar de Atacama (northern Chile) as a potential source of compounds for biotechnological applications. Phycol. Res., 65, 202-211. Keywords: Altiplane; Chlorella sorokiniana; extreme tolerant; microalgae; microbial mat; oleaginous strain, polyunsaturated; fatty acid; stearic acid Strain(s): 2173  DOI: 10.1111/pre.12176 Hayashi-Ishimaru, Y., Ehara, M., Inagaki, Y., Ohama, T. 1997 A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan. Curr. Genet., 32, 296-299. Keywords: Prymnesiophyta; deviant genetic code; cytochrome c oxidase subunit I; the codon-capture theory Strain(s): 8,  353,  388  PubMed: 9342410 DOI: 10.1007/s002940050280 Hayashi-Ishimaru, Y., Ohama, T., Kawatsu, Y., Nakamura, K., Osawa, S. 1996 UAG is a sense codon in several chlorophycean mitochondria. Curr. Genet., 30, 29-33. Keywords: deviant genetic code; COXI; Chlorophyceaen mitochondria; release factor Strain(s): 96,  209,  227,  415  PubMed: 8662206 DOI: 10.1007/s002940050096 Hazraty-Kari, S., Masaya, M., Kawachi, M., Harii, S. 2022 The early acquisition of symbiotic algae benefits larval survival and juvenile growth in the coral Acropora tenuis. J. Exp. Zool. Part A-Ecol. Integr. Physiol., 337, 559-565. Keywords: juveniles; larvae; lipids; scleractinia; symbionts Strain(s): 2907  PubMed: 35286770 DOI: 10.1002/jez.2589 Hee-jin, C., Baik-ho, K., Jeong-dong, K., Myung-soo, H. 2005 Streptomyces neyagawaensis as a control for the hazardous biomass of Microcystis aeruginosa (Cyanobacteria) in eutrophic freshwaters. Biol. Control, 33, 335-343. Keywords: Antialgal bacterium; Streptomyces neyagawaensis; Microcystis aeruginosa; Biological control; Freshwater; Cyanobacterial bloom Strain(s): 298  DOI: 10.1016/j.biocontrol.2005.03.007 Hepperle, D., Nozaki, H., Hohenberger, S., Huss, V. A. R., Morita, E., Krienitz, L. 1998 Phylogenetic position of the Phacotaceae within the Chlamydophyceae as revealed by analysis of 18S rDNA and rbcL sequences. J. Mol. Evol., 47, 420-430. Keywords: Phacotaceae; Volvocales; 18S rDNA phylogeny; lorica-bearing flagellates; green algae Strain(s): 446,  858,  859,  861,  862  PubMed: 9767687 DOI: 10.1007/PL00006399 Higashiyama, T. & Yamada, T. 1991 Electrophoretic karyotyping and chromosomal gene mapping of Chlorella. Nucleic Acids Res., 19, 6191-6195. Strain(s): 2163,  2166,  2171,  2189  PubMed: 1956777 DOI: 10.1093/nar/19.22.6191 Higo, A., Kawashima, T., Borg, M., Zhao, M., López-Vidriero, I., Sakayama, H., Montgomery, S, A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T., Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y., Yamato, K. T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J. M., Twell, D., Berger, F., Araki, T. 2018 Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nat. Commun., 9, 5283 (article ID). Strain(s): 67,  68  PubMed: 30538242 DOI: 10.1038/s41467-018-07728-3 Higuchi, R., Song, C., Hoshina, R., Suzaki, T. 2018 Endosymbiosis-related changes in ultrastructure and chemical composition of Chlorella variabilis (Archaeplastida, Chlorophyta) cell wall in Paramecium bursaria (Ciliophora, Oligohymenophorea). Eur. J. Protistol., 66, 149-155. Keywords: Cell wall; Chlorella variabilis; GlycosaminoglycansParamecium bursaria; Symbiosis Strain(s): 3374  PubMed: 30286318 DOI: 10.1016/j.ejop.2018.09.003 Higuchi, S., Sugahara, F., Pascual-Anaya, J., Takagi, W., Oisi, Y., Kuratani, S. 2019 Inner ear development in cyclostomes and evolution of the vertebrate semicircular canals. Nature, 565, 347–350. Strain(s): 3374  PubMed: 30518864 DOI: 10.1038/s41586-018-0782-y Hiki, K., Tsuchikawa, M., Nakajima, F., Tobino, T. 2019 Identification of antioxidant genes in the ostracod Heterocypris incongruens through de novo transcriptome sequencing. J. JSCE, 7, 133-142. Keywords: Heterocypris incongruens, ostracod, antioxidant genes, de novo transcriptome, toxicity, road dust Strain(s): 94  DOI: 10.2208/journalofjsce.7.1_133 Hikihara, R., Yamasaki, Y., Shikata, T., Nakayama, N., Sakamoto, S., Kato, S., Hatate, H., Tanaka, R. 2020 Analysis of phytosterol, fatty acid, and carotenoid composition of 19 microalgae and 6 bivalve species. J. Aquat. Food Prod. Technol., 29, 461-479. Keywords: Microalgae; bivalve; phytosterol; fucosterol; fatty acid Strain(s): 1,  10,  324  DOI: 10.1080/10498850.2020.1749744 Hino, S. 1991 An examination of algal bioassay method for agricultural chemicals and heavy metals in a water environment. Hokkaido Kankyô Kagaku Kenkyû Sentâ Syohô, 18, 41-49 (in Japanese with English summary). Strain(s): 228,  229  Hirabaru, C., Izumo,A., Fujiwara, S., Tadokoro, Y., Shimonaga, T., Konishi, M., Yoshida, M., Fujita, N., Nakamura, Y., Yoshida, M., Kuroiwa, T., Tsuzuki, M. 2010 The primitive rhodophyte Cyanidioschyzon merolae contains a semiamylopectin-type, but not an amylose-type, α-glucan. Plant Cell Physiol., 51, 682-693. Keywords: Amylose; Cyanidioschyzon; Floridean starch; Glycogen; Starch synthase; Semiamylopectin Strain(s): 551  PubMed: 20385610 DOI: 10.1093/pcp/pcq046 Hirabayashi, R. & Imamura, N. 2003 Action mechanism of a selective anti-cyanobacterial compound, argimicin A. J. Antibiotics, 56, 154-159. Strain(s): 41,  45,  81,  102,  204,  230,  298,  592  PubMed: 12715875 DOI: 10.7164/antibiotics.56.154 Hirai, A., Nishimura, T., Iwamura, T. 1979 Synthetic rates of chloroplast and cytoplasmic ribosomal ribonucleic acids during the cell cycle of Chlorella. Plant Cell Physiol., 20, 93-102. Keywords: cell cycle; Chlorella; chloroplast rRNA; cytoplasmic rRNA; RNA synthesis; radioisotopic precursor Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a075810 Hiraide, R., Kawai-Toyooka, H., Hamaji, T ., Matsuzaki, R., Kawafune, K., Abe, J., Sekimoto, H., Umen, J., Nozaki, H. 2013 The evolution of male–female sexual dimorphism predates the gender-based divergence of the mating locus gene MAT3/RB. Mol. Biol. Evol., 30, 1038-1040. Keywords: gender-based divergence; gene conversion; male–female sexual dimorphism; MAT3/RB, mating type locus; volvocine algae Strain(s): 722,  733,  866,  1710,  1711,  1859,  1861,  3985,  4018  PubMed: 23364323 DOI: 10.1093/molbev/mst018 Hiramatsu, K., Ideguchi, T., Yonamine, Y., Lee, S. W., Luo, Y., Hashimoto, K., Ito, T., Hase, M., Park, J.-W., Kasai, Y., Sakuma, S., Hayakawa, T., Arai, F., Hoshino, Y., Goda, K. 2019 High-throughput label-free molecular fingerprinting flow cytometry. Sci. Adv., 5, eaau0241 (article ID). Strain(s): 48,  144,  4141  PubMed: 30746443 DOI: 10.1126/sciadv.aau0241 Hirano, H., Iguchi, M., Nishimura, T., Iwamura, T. 1986 Isolation of high molecular weight cellular DNA with a novel granulated hydroxyapatite. Agric. Biol. Chem., 50, 219-221. Strain(s): 2170  Hirano, H., Takeda, Y., Iwamura, T. 1986 Unique repetitive sequences of 170 bp in Chlorella. Plant Mol. Biol., 7, 311-317. Keywords: Chlorella; HaeIII family; repetitive sequence; tandem repeat Strain(s): 2160,  2170  PubMed: 24302372 DOI: 10.1007/BF00752903 Hirano, M., Mori, H., Miura, Y., Matsunaga, N., Nakamura, N., Matsunaga, T. 1990 γ-ｌinolenic acid production by microalgae. Appl. Biochem. Biotechnol., 24/25, 183-191. Keywords: g-linolenic acid; Spirulina platensis; green algae; lipid; marine microalgae Strain(s): 39  DOI: 10.1007/BF02920244 Hirano, N., Marukawa, Y., Abe, J., Hashiba, S., Ichikawa, M., Tanabe, Y., Ito, M., Nishii, I., Tsuchikane, Y., Sekimoto, H. 2015 A receptor-like kinase, related to cell wall sensor of higher plants, is required for sexual reproduction in the unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 56, 1456-1462. Keywords: Cell wall; Charophycean alga; Closterium peracerosum–strigosum–littorale complex; CrRLK1L-1; Receptor-like kinase; Sexual reproduction Strain(s): 67,  68  PubMed: 25941232 DOI: 10.1093/pcp/pcv065 Hirano, T., Masho, R., Koizumi, D., Tabata, S., Suzuki, K., Sakabe, M., Nakano, Y., Sato, N., Sudo, R. 2006 Ecotoxicity testing of bioremediation agents for shoreline oil-spill clean up. Jpn. J. Environ. Toxicol., 9, 115-131. Keywords: ecotoxicity; bioremediation; oil-spill; acute toxicity; marine organisms Strain(s): 324  DOI: 10.11403/jset.9.115 Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID). Strain(s): 2202,  2207,  2212,  2242  PubMed: 27688324 DOI: 10.1128/genomeA.01070-16 Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N. 2017 Characterization of phosphoethanolamine-N-methyltransferases in green algae. Biochem. Biophys. Res. Commun., 488, 141-146. Keywords: Green algal evolution; Chlamydomonas; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase Strain(s): 2202,  2207,  2212,  2235,  2242  PubMed: 2848352 DOI: 10.1016/j.bbrc.2017.05.026 Hirashima, T., Toyoshima, M., Moriyama, T., Sato, N. 2018 Evolution of the phosphatidylcholine biosynthesis pathways in green algae: Combinatorial diversity of methyltransferases. J. Mol. Evol., 86, 68-76. Keywords: Chlamydomonas; Metabolic diversity; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase; Phospholipid-N-methyltransferase Strain(s): 2202,  2207,  2212,  2242  PubMed: 29330556 DOI: 10.1007/s00239-017-9826-4 Hirata, K., Phunchindawan, M., Tukamoto, J., Goda, S., Miyamoto, K. 1996 Cryopreservation of microalgae using encapsulation-dehydration. CryoLetters, 17, 321-328. Keywords: Dunaliella tertiolecta; microalgae; cryopreservation; encapsulation-dehydration Strain(s): 8,  19,  22,  24,  27,  32,  44,  242,  375,  396,  422,  437  Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K. 2017 Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii. Acta Crystallogr. F-Struct. Biol., F73, 86-89. Keywords: D-threonine aldolase; Chlamydomonas reinhardtii; D-amino acids; crystallization Strain(s): 2237  PubMed: 28177318 DOI: 10.1107/S2053230X1602063X Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K. 2017 Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii. Phytochemistry, 135, 18-23. Keywords: Chlamydomonas reinhardtii; Chlamydomonadaceae; Green alga; Enzyme characterization; d-Amino acid; d-Threonine aldolase; Pyridoxal 5’-phosphate Strain(s): 2237  PubMed: 28038776 DOI: 10.1016/j.phytochem.2016.12.012 Hirayama, A., Sueyoshi, M. N., Nakano, T., Ota, Y., Kurita, H., Tasaki, M., Kuroiwa, Y., Kato, T., Serizawa, S., Kojima, K., Al-Maamari, R. S., Hasegawa, T., Thomas-Hall, S. R., Schenk, P. M. 2022 .Development of large-scale microalgae production in the Middle East. Bioresour. Technol., 343, 126036 (article ID). Keywords: Chlorella sorokiniana; Large-scale microalgae production; Outdoor raceway ponds; Photobioreactor; Water temperature control Strain(s): 2169  PubMed: 34626761 DOI: 10.1016/j.biortech.2021.126036 Hiroishi, S., Nakai, R., Seto, H., Yoshida, T., Imai, I. 2002 Identification of Heterocapsa circularisquama by means of antibody. Fish. Sci., 68, Suppl., 627-628. Keywords: identification; Heterocapsa; dinoflagellate; antibody Strain(s): 7,  235,  472,  473  DOI: 10.2331/fishsci.68.sup1_627 Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1988 A new method for identification of inter- and intra-species of the red tide algae Chattonella antiqua and Chattonella marina (Raphidophyceae) by means of monoclonal antibodies. J. Phycol., 24, 442-444. Keywords: Chattonella; identification; immunofluorescence; inter-species; intra-species; method; monoclonal antibody; red tide Strain(s): 1,  2,  14,  83,  84,  85,  86,  113,  114,  115,  116,  118,  121  DOI: 10.1111/j.1529-8817.1988.tb04488.x Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1989 A new method for inter- and intra-species identification of red tide algae Chattonella antiqua and Chattonella marina by means of monoclonal antibodies. In Red Tides: Biology, Environmental Science, and Toxicology, Eds. by Okaichi, T., Anderson, D. M. & Nemoto, T., Elsevier Science Pub., New York, pp. 299-300. Strain(s): 85,  86,  118,  121  Hirokawa, T. & Takeda, H. 1980 Automatic analysing system for the liquid chromatography. J. Gen. Edu. Dept., Niigata Univ., 10, 97-106. Strain(s): 226,  2170  Hirokawa, T., Hata, M., Takeda, H. 1982 Correlation between the starch level and the rate of starch synthesis during the developmental cycle of Chlorella ellipsoidea. Plant Cell Physiol., 23, 813-820. Keywords: 14C-fixation; cell cycle; Chlorella ellipsoidea; photosynthesis; starch accumulation; starch synthesis; synchronous culture Strain(s): 2170  Hirokawa, T., Miyachi, S., Tamiya, H. 1958 Effect of hydrogen peroxide on the light-induced capacity of carbon dioxide-fixation in green algae. J. Biochem., 45, 1005-1010. Strain(s): 2170  Hiroki, M., Shimizu, A., Li, R., Watanabe, M., Watanabe, M. M. 1998 Development of a database system useful for identification of Anabaena spp. (Cyanobacteria). Phycol. Res., 46, Suppl., 85-93. Keywords: Anabaena; computer; cyanobacteria; database system; identification; morphology Strain(s): 810,  819,  826,  835  DOI: 10.1111/j.1440-1835.1998.tb00276.x Hoshina, R. & Nakada, T. 2018 Carolibrandtia nom. nov. as a replacement name for Brandtia Hoshina (Chlorellaceae, Trebouxiophyceae). Phycol. Res., 66, 82-83. Keywords: Chlorella-like alga; ciliate; later homonym; nomenclature; photobiont; symbiosis Strain(s): 4032,  4033,  4034  DOI: 10.1111/pre.12208 Hirooka, S., Itabashi, T., Ichinose, T. M., Onuma, R., Fujiwara, T., Yamashita, S., Jong, L. W., Tomita, R., Iwane, A. H., Miyagishima, S. 2022 Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use. Proc. Natl. Acad. Sci. U. S. A., 119, e2210665119 (article ID). Keywords: Galdieria; sexual reproduction; homeobox; actin; microalgae Strain(s): 550  PubMed: 36194630 DOI: 10.1073/pnas.2210665119 Hirooka, S., Tomita, R., Fujiwara, T., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., Miyagishima, S. 2020 Efficient open cultivation of cyanidialean red algae in acidified seawater. Sci Rep, 10, 13794 (article ID). Strain(s): 2137,  3377  PubMed: 32839467 DOI: 10.1038/s41598-020-70398-z Hirooka, T., Akiyama, Y., Tsuji, N., Nakamura, T., Nagase, H., Hirata, K., Miyamoto, K. 2003 Removal of hazardous phenols by microalgae under photoautotrophic conditions. J. Biosci. Bioeng., 95, 200-203. Keywords: green algae; cyanobacteria; nitrophenol; chlorophenol; bisphenol A; photoautotrophic conditions Strain(s): 19,  23,  44,  422,  437  PubMed: 16233393 DOI: 10.1016/S1389-1723(03)80130-5 Hirooka, T., Nagase, H., Hirata, K., Miyamoto, K. 2006 Degradation of 2,4-dinitrophenol by a mixed culture of photoautotrophic microorganisms. Biochem. Eng. J., 29, 157-162. Keywords: 2,4-Dinitrophenol; 2-Amino-4-nitrophenol; Anabaena variabilis; Anabaena cylindrica; Mixed culture Strain(s): 19,  23,  3284  DOI: 10.1016/j.bej.2005.03.018 Hirosawa, T. 1984 Near-UV and blue light effects in cyanobacteria. In Blue Light Effects in Biological Systems, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 39-47. Strain(s): 19,  37,  2093,  3277  Hirose, M., Reimer, J. D., Hidaka, M., Suda, S. 2008 Phylogenetic analyses of potentially free-living Symbiodinium spp. Isolated from coral reef sand in Okinawa, Japan. Mar. Biol., 155, 105-112. Strain(s): 2638,  2639,  2640,  2641,  2642,  2643  DOI: 10.1007/s00227-008-1011-2 Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46. Keywords: Cyanobacteria; Genome; Photosensor; Thermophile Strain(s): 3754  PubMed: 26784989 DOI: 10.1016/j.jbiotec.2016.01.011 Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Leptolyngbya sp. NIES-3755. GenomeA, 4, e00090-16 (article ID). Strain(s): 3755  PubMed: 26988037 DOI: 10.1128/genomeA.00090-16 Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52. Strain(s): 3756  PubMed: 26656223 DOI: 10.1016/j.jbiotec.2015.12.002 Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015a Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3708, which performs type II complementary chromatic acclimation. GenomeA, 3, e00357-15 (article ID). Strain(s): 3708  PubMed: 25953174 DOI: 10.1128/genomeA.00357-15 Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015b Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3709, which harbors a phycoerythrin-rich phycobilisome. GenomeA, 3, e00385-15 (article ID). Strain(s): 3709  PubMed: 25931605 DOI: 10.1128/genomeA.00385-15 Hirose, Y., Misawa, N., Yonekawa, C., Nagao, N., Watanabe, M., Ikeuchi, M., Eki, T. 2017 Characterization of the genuine type 2 chromatic acclimation in the two Geminocystis cyanobacteria. DNA Res., 24, 387-396. Keywords: Cyanobacteria; chromatic acclimation; phycobilisome; cyanobacteriochrome Strain(s): 3708,  3709  PubMed: 28338901 DOI: 10.1093/dnares/dsx011 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19,  21,  22,  23,  25,  37,  50,  73,  267,  806,  932,  2098,  2100,  2107,  2109,  2111,  2130,  2135,  3275,  3585,  3757,  3974,  4073,  4074,  4075,  4101,  4102,  4103,  4106  PubMed: 34677568 DOI: 10.1093/dnares/dsab024 Hiwatari, T., Kasai, F., Watanabe, M. M., Nei, T. 1984 Cryopreservation of Scenedesmus acutus and Pediastrum duplex in liquid nitrogen - Survival and growth after freezing. Jpn. J. Freez. Dry., 30, 27-31 (in Japanese with English title). Strain(s): 95,  213  Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S. 2012 Detection and identification of potentially toxic cyanobacteria: Ubiquitous distribution of Microcystis aeruginosa and Cuspidothrix issatschenkoi in Japanese lakes. Harmful Algae, 16, 49-57. Keywords: Anatoxin-a; Automated rRNA intergenic spacer analysis (ARISA); Cuspidothrix issatschenkoi; Cyanotoxin; Microcystin; Microcystis aeruginosa Strain(s): 30,  40,  77,  102,  111,  230,  512,  843,  905,  928,  932,  937,  991,  1645,  1669,  1698,  1729,  1950,  2116  DOI: 10.1016/j.hal.2012.01.003 Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S.-I. 2011 Temporal variation in cyanobacteria species composition and photosynthetic activity in experimentally induced blooms. J. Plankton Res., 33, 1410-1416. Keywords: cyanobacterial bloom; DCMU [3'-(3,4-dichlorophenyl)-1',1'-dimethyl urea]; maximum quantum yieldMicrocystis aeruginosa Strain(s): 843  DOI: 10.1093/plankt/fbr040 Hoef-Emden, K. 2012 Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS One, 7, e43652 (article ID). Strain(s): 274,  706,  708,  711,  712,  713,  714,  1004,  1370  PubMed: 22970104 DOI: 10.1371/journal.pone.0043652 Hoef-Emden, K. 2014 Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist, 165, 123-143. Keywords: Chroomonas; contractile vacuole; cryptomonads; floridoside; osmolarity; osmoregulation; osmotolerance; phylogeny Strain(s): 708,  712,  713,  714,  1004  PubMed: 24568876 DOI: 10.1016/j.protis.2014.01.001 Hoef-Emden, K. 2018 Revision of the genus Chroomonas HANSGIRG: The benefits of DNA-containing specimens. Protist, 169, 662-681. Keywords: Chroomonas; novel species; phylogeny; ancient DNA; revision; Cryptophyceae Strain(s): 708,  712,  1004  PubMed: 30125802 DOI: 10.1016/j.protis.2018.04.005 Hoef-Emden, K., Melkonian, M. 2003 Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism. Protist, 154, 371-409. Strain(s): 274,  276,  279  PubMed: 14658496 DOI: 10.1078/143446103322454130 Hogetsu, D. & Miyachi, S. 1970 Effect of oxygen on the light-enhanced dark carbon dioxide fixation in Chlorella cells. Plant Physiol., 45, 178-182. Strain(s): 2170  PubMed: 16657299 DOI: 10.1104/pp.45.2.178 Hogetsu, D. & Miyachi, S. 1977 Effects of CO2 concentration during growth on subsequent photosynthetic CO2 fixation. Plant Cell Physiol., 18, 347-352. Strain(s): 2160  Hogetsu, D. & Miyachi, S. 1979 Role of carbonic anhydrase in photosynthetic CO2 fixation in Chlorella. Plant Cell Physiol., 20, 747-756. Keywords: carbonic anhydrase; Chlorella; CO2 fixation; photosynthesis; ribulose 1,5-bisphosphate carboxylase Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a075865 Honda, D., Yokota, A., Sugiyama, J. 1999 Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J. Mol. Evol., 48, 723-739. Keywords: cyanobacteria; Synechococcus; phylogeny; ribosomal RNA; maximum-likelihood method; neighbor-joining method; rate homo- and heterogeneous models Strain(s): 27,  208,  510,  2116,  2118,  2119  PubMed: 10229577 DOI: 10.1007/PL00006517 Honda, R., Boonnorat, J., Chiemchaisri, C., Chiemchaisri, w., Yamamoto, K. 2012 Carbon dioxide capture and nutrients removal utilizing treated sewage by concentrated microalgae cultivation in a membrane photobioreactor. Bioresour. Technol., 125, 59-64. Keywords: Carbon dioxide capture; Nutrients removal; Membrane photobioreactor; Microalgae; Botryococcus braunii Strain(s): 2199  PubMed: 23023237 DOI: 10.1016/j.biortech.2012.08.138 Honda, R., Rukapan, W., Komura, H., Teraoka, Y., Noguchi, M., Hoek, E.M.V. 2015 Effects of membrane orientation on fouling characteristics of forward osmosis membrane in concentration of microalgae culture. Bioresour. Technol., 197, 429-433. Keywords: Forward osmosis; Microalgae; Membrane fouling; Extracellular polymeric substances (EPS) Strain(s): 2170  PubMed: 26356114 DOI: 10.1016/j.biortech.2015.08.096 Honda, R., Teraokab, Y., Noguchia, M., Yang, S. 2017 Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor. J. Water Environ. Technol., 15, 1-11. Keywords: membrane photobioreactor; microalgae; resource recovery from wastewater Strain(s): 2170  DOI: 10.2965/jwet.15-085 Honda, T., Takahashi, H., Sako, Y., Yoshida, T. 2014 Gene expression of Microcystis aeruginosa during infection of cyanomyovirus Ma-LMM01. Fish. Sci., 80, 83-91. Keywords: Cyanophage; Ma-LMM01; Microcystis aeruginosa; Transcriptional regulation; Auxiliary; metabolic genes Strain(s): 298  DOI: 10.1007/s12562-013-0685-7 Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa. Fish. Sci., 78, 375-379. Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ Strain(s): 298  DOI: 10.1007/s12562-011-0442-8 Hondo, S., Takahashi, M., Osanai, T., Matsuda, M., Hasunuma, T., Tazuke, A., Nakahira, Y., Chohnan, S., Hasegawa, M., Asayama, M. 2015 Genetic engineering and metabolite profiling for overproduction of polyhydroxybutyrate in cyanobacteria. J. Biosci. Bioeng., 120, 510-517. Keywords: Acetyl-CoA; Cyanobacteria; Metabolite analysis; Nitrogen depletion; Polyhydroxybutyrate Strain(s): 843  PubMed: 26055446 DOI: 10.1016/j.jbiosc.2015.03.004 Hong, J. W., Kim, O. H., Jo, S. W., Kim, H., Jeong, M. R., Yoon, H. S. 2018 Characterization of alkane-producing Nostoc sp. isolated from a summer bloom for biofuel potential. J. Biobased Mater. Bioenergy, 12, 244-251. Keywords: Alkane-Producing Genes; Biofuel; Cyanobacteria; Heptadecane; Potential; Feedstoc Strain(s): 21,  2109  DOI: 10.1166/jbmb.2018.1757 Hong, M. E., Choi, S. P., Park, Y. I., Kim, Y. K., Chang, W. S., Kim, B. W., Sim, S. J. 2012 Astaxanthin production by a highly photosensitive Haematococcus mutant. Process Biochem., 47, 1972–1979. Keywords: Haematococcus pluvialis; Astaxanthin; Photo-inducible mutant; Photo-sensitivity Strain(s): 144  DOI: 10.1016/j.procbio.2012.07.007 Hong, M. E.1, Choi, H. I., Kwak, H. S., Hwang, S. W., Sung, Y. J., Chang, W. S., Sim, S. J. 2018 Rapid selection of astaxanthin-hyperproducing Haematococcus mutant via azide-based colorimetric assay combined with oil-based astaxanthin extraction. Bioresour. Technol., 267, 175-181. Keywords: Haematococcus pluvialis; Autotrophic astaxanthin production; High-throughput screening; Azide-based colorimetric assay; Oil-based astaxanthin extraction method Strain(s): 144  PubMed: 30014996 DOI: 10.1016/j.biortech.2018.07.033 Hong, M.-E., Choi, Y. Y., Sim, S. J. 2016 Effect of red cyst cell inoculation and iron (II) supplementation on autotrophic astaxanthin production by Haematococcus pluvialis under outdoor summer conditions. J. Biotechnol., 218, 25–33. Keywords: Haematococcus pluvialis; Photoautotrophic culture; Astaxanthin; Summer outdoor conditions; Red cyst cell (aplanospore) inoculation method; Iron(Fe2+) supplementation method Strain(s): 144  PubMed: 26630998 DOI: 10.1016/j.jbiotec.2015.11.019 Hongo, Y., Hano, T., Yamaguchi, H., Tamaru, Y. 2023 Transcriptional responses of the marine diatom Chaetoceros tenuissimus to phosphate deficiency. Gene, 884, 147695 (article ID). Keywords: Phosphorus-deficiency; Differentially expressed genes; RNA-seq; Nonphospholipid; Alkaline phosphatase; Diatom Strain(s): 3715  PubMed: 37549856 DOI: 10.1016/j.gene.2023.147695 Hongo, Y., Kimura, K., Takaki, Y., Yoshida, Y., Baba, S., Kobayashi, G., Nagasaki, K., Hano, T., Tomaru, Y. 2021 The genome of the diatom Chaetoceros tenuissimus carries an ancient integrated fragment of an extant virus. Sci Rep, 11, 22877 (article ID). Strain(s): 3715  PubMed: 34819553 DOI: 10.1038/s41598-021-00565-3 Honjo, M., Matsui, K., Ueki, M., Nakamura, R., Fuhrman, J. A., Kawabata, Z. 2006 Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond. J. Plankton Res., 28, 407-412. Strain(s): 298  DOI: 10.1093/plankt/fbi128 Hoppenrath, M., Yubuki, N., Stern, R., Leander, B. S. 2017 Ultrastructure and molecular phylogenetic position of a new marine sand-dwellin dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae). Eur. J. Phycol., 52, 208-224. Keywords: Clone libraries; depth gradient; microscopy; NGS library; oxyphotobacteriav; stromatolites; taxonomy Strain(s): 1367  DOI: 10.1080/09670262.2016.1274788 Hori, K. Maruyama, F., Fujisawa, T., Togashi, T., Yamamoto, N., Seo, M., Sato, S., Yamada, T., Mori, H., Tajima, N., Moriyama, T., Ikeuchi, M., Watanabe, M., Wada, H., Kobayashi, K., Saito, M., Masuda, T., Sasaki-Sekimoto, Y., Mashiguchi, K., Awai, K., Shimojima, M., Masuda, S., Iwai, M., Nobusawa, T., Narise, T., Kondo, S., Saito, H., Sato, R., Murakawa, M., Ihara, Y., Oshima-Yamada, Y., Ohtaka, K., Satoh, M., Sonobe, K., Ishii, M., Ohtani, R., Kanamori-Sato, M., Honoki, R., Miyazaki, D., Mochizuki, H., Umetsu, J., Higashi, K., Shibata, D., Kamiya, Y., Sato, N., Nakamura, Y., Tabata, S., Ida, S., Kurokawa, K., Ohta, H. 2014 Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat. Commun., 5, 3978 (article ID). Strain(s): 2285  PubMed: 24865297 DOI: 10.1038/ncomms4978 Hori, S., Sekimoto, H., Abe, J. 2012 Properties of cell surface carbohydrates in sexual reproduction of the Closterium peracerosum–strigosum–littorale complex (Zygnematophyceae, Charophyta). Phycol. Res., 60, 254-260. Keywords: cell-cell recognition; Closterium; ConcanavalinA; conjugation; lectin; Lycopersicon esculentum lectin; sexual reproduction Strain(s): 67,  68  DOI: 10.1111/j.1440-1835.2012.00656.x Horiguchi, T. 1996 Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol. Res., 44, 143-150. Keywords: Haramonas dimorpha gen et sp. nov.; mangrove; Raphidophyceae; taxonomy; tubular invagination; ultrastructure Strain(s): 716  DOI: 10.1111/j.1440-1835.1996.tb00043.x Hoshina, R. & Imamura, N. 2009 Phylogenetically close group I introns with different positions among Paramecium bursaria photobionts imply a primitive stage of intron diversification. Mol. Biol. Evol., 26, 1309-1319. Keywords: degenerative homing; intron diversification; intron transposition; Paramecium bursaria symbiotic algae; reverse splicing Strain(s): 2541  PubMed: 19279084 DOI: 10.1093/molbev/msp044 Hoshina, R. & Fujiwara, Y. 2013 Molecular characterization of Chlorella cultures of the National Institute for Environmental Studies culture collection with description of Micractinium inermum sp. nov., Didymogenes sphaerica sp. nov., Didymogenes soliella sp. nov., (Chlorellaceae, Trebouxiophyceae). Phycol. Res., 61, 124-132. Keywords: Chlorella; Didymogenes; group 1 intron; internal transcribed spacer 2; Micractinium; species concept Strain(s): 2167,  2171,  2173,  2330  DOI: 10.1111/pre.12010 Hoshina, R., Hayakawa, M. M., Kobayashi, M., Higuchi, R., Suzaki, T. 2020 Pediludiella daitoensis gen. et sp. nov. (Scenedesmaceae, Chlorophyceae), a large coccoid green alga isolated from a Loxodes ciliate. Sci Rep, 10, 628 (article ID). Strain(s): 4031  PubMed: 31959793 DOI: 10.1038/s41598-020-57423-x Hoshina, R. & Imamura, N. 2008 Eu-Chlorella large subunit rDNA sequences and group I introns in ribosomal DNA of the paramecian symbiotic alga NC64A. Phycol. Res., 56, 21-32. Keywords: Chlorella vulgaris; group I intron; intron phylogeny; intron transposition; large subunit ribosomal DNA; NC64A Strain(s): 227  DOI: 10.1111/j.1440-1835.2008.00481.x Hoshina, R., Iwataki, M., Imamura, N. 2010 Chlorella variabilis and Micractinium reisseri sp. nov. (Chlorellaceae, Trebouxiophyceae): Redescription of the endosymbiotic green algae of Paramecium bursaria (Peniculia, Oligohymenophorea) in the 120th year. Phycol. Res., 58, 188-201. Keywords: Chlorella variabilis; ITS2; Micractinium reisseri; Paramecium bursaria; species concept Strain(s): 2540,  2542  DOI: 10.1111/j.1440-1835.2010.00579.x Hoshina, R., Kamako, S.-I., Imamura, N. 2004 Phylogenetic position of endosymbiotic green algae in Paramecium bursaria Ehrenberg from Japan. Plant Biol., 6, 447-453. Keywords: 18S rDNA; Chlorella; endosymbiont; ITS; Paramecium bursaria; phylogeny Strain(s): 2540,  2541  DOI: 10.1055/s-2004-820888 Hoshina, R., Kato, Y., Kamako, S., Imamura, N. 2005 Genetic evidence of "American" and "European" type symbiotic algae of Paramecium bursaria Ehrenberg. Plant Biol., 7, 526-532. Keywords: 18S rDNA; "American"; "European"; Chlorella; ITS; Paramecium bursaria; Phylogeny Strain(s): 2540,  2541  DOI: 10.1055/s-2005-865912 Hoshina, R., Kobayashi, M., Suzaki, T., Kusuoka, Y. 2018 Brandtia ciliaticola gen. et sp. nov. (Chlorellaceae, Trebouxiophyceae) a common symbiotic green coccoid of various ciliate species. Phycol. Res., 66, 76-81. Keywords: Chlorella; genus definition; rRNA structure Strain(s): 4032,  4033,  4034  DOI: 10.1111/pre.12194 Hoshina, R., Tsukii, Y., Harumoto, T., Suzaki, T. 2021 Characterization of a green Stentor with symbiotic algae growing in an extremely oligotrophic environment and storing large amounts of starch granules in its cytoplasm. Sci Rep, 11, 2865 (article ID). Strain(s): 3374  PubMed: 33536497 DOI: 10.1038/s41598-021-82416-9 Hosoi-Tanabe, S. & Sako, Y. 2005 Species-specific detection and quantification of toxic marine Dinoflagellates Alexandrium tamarense and A. catenella by reai-time PCR assay. Mar. Biotechnol., 7, 506-514. Keywords: toxic dinoflagellate; — Alexandrium; paralytic shellfish poisoning (PSP); real-time PCR; species-specific identification; quantification Strain(s): 1,  7,  12,  293,  331,  559,  603,  670  PubMed: 16007374 DOI: 10.1007/s10126-004-4128-4 Hosoi-Tanabe, S., Honda, D., Fukaya, S., Otake, I., Inagaki, Y., Sako, Y. 2007 Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar rephidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycol. Res., 55, 185-192. Keywords: Chatonella verruculosa; Dictyochophyceae; flagellar apparatus; harmful algal bloom; phylogenetic analysis; Pseudochattonella verruculosa; Raphidophyceae Strain(s): 670  DOI: 10.1111/j.1440-1835.2007.00461.x Hosoi-Tanabe, S., Otake, I., Sako, Y. 2006 Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C. marina, C. ovata, and C. verruculosa (Raphidophyceae) based on the rRNA gene family. Fish. Sci., 72, 1200-1208. Keywords: Chattonella; genetic homogeneity; phylogenetic analysis; Raphidophyceae; rRNA gene family Strain(s): 1,  5,  86,  121,  558,  559,  603,  670  DOI: 10.1111/j.1444-2906.2006.01277.x Hosokawa, Y., Miki-Noumura, T. 1987 Bending motion of Chlamydomonas axonemes after extrusion of central-pair microtubules. J. Cell Biol., 105, 1297-1301. Strain(s): 2239  Hosomi, M. & Sudo, R. 1979 Studies on the effects of sediments on algal growth - Algal growth potential of sediments. Res. Rep. Natl. Inst. Environ. Stud., No. 6, 115-121 (in Japanese with English summary). Strain(s): 35  Hosoya, R., Hamana, K., Isobe, M., Yokota, A. 2005 Polyamine distribution profiles within Cyanobacteria. Microbiol. Cult. Coll., 21, 3-8. Keywords: cyanobacteria; homospermidine; polyamine; spermidine Strain(s): 19,  21,  22,  28,  30,  34,  37,  41,  44,  45,  50,  73,  78,  79,  80,  81,  204,  208,  510,  512,  515,  592,  593,  610,  843,  846,  847,  2093,  2096,  2098,  2100,  2102,  2107,  2108,  2118,  2119,  2123,  2124,  2125,  2126,  2128,  2129,  2131,  2132,  3259,  3275,  3276,  3277  Hou, X., Yan, Y., Wang, Y., Jiang, T., Zhang, X., Dai, X., Igarashi, Y., Luo, F., Yang, C. 2023 An insight into algicidal characteristics of Bacillus altitudinis G3 from dysfunctional photosystem and overproduction of reactive oxygen species. Chemosphere, 310, 136767 (article ID). Keywords: Harmful cyanobacterial blooms; Photosynthesis; Electron transfer; ROS Strain(s): 843  PubMed: 36241112 DOI: 10.1016/j.chemosphere.2022.136767 Houdai, T., Matsuoka, S., Matsumori, N., Murata, M. 2004 Membrane-permeabilizing activities of amphidinol 3, polyene-polyhydroxy antifungal from a marine dinoflagellate. Biochem. Biophys. Acta, 1667, 91-100. Keywords: amphidinol; Amphidinium klebsii; amphotericin B Strain(s): 613  PubMed: 15533309 DOI: 10.1016/j.bbamem.2004.09.002 Houdai, T., Matsuoka, S., Morsy, N., Matsumori, N., Satake, M., Murata, M. 2005 Hairpin conformation of amphidinols possibly accounting for potent membrane permeabilizing activities. Tetrahedron, 61, 2795-2802. Keywords: amphidinol membrane-permeabilizaion Strain(s): 613  DOI: 10.1016/j.tet.2005.01.069 Houdai, T., Matsuoka, S., Murata, M., Satake, M., Ota, S., Oshima, Y., Rhodes, L. L. 2001 Acetate labeling patterns of dinoflagellate polyketides, amphidinols 2, 3 and 4. Tetrahedron, 57, 5551-5555. Keywords: dinoflagellate; polyketides; biosynthesis; amphidinol; Amphidinium; isotopic labelling Strain(s): 613  DOI: 10.1016/S0040-4020(01)00481-1 Houndan, A., Billard, C., Marie, D., Not, F., Sáez, A. G., Young, J. R., Probert, I. 2003 Holococcolithophore-heterococcolithophore (Haptophyta) life cycles: flow cytometric analysis of relative ploidy levels. Systematics and Biodiversity, 4, 453-465. Keywords: Coccolithophore; haplo-diploid; Haptophyta; heterococcolith; holococcolith; life cycle; microalgae; ploidy Strain(s): 2694,  2697  DOI: 10.1017/S1477200003001270 Hovde, B. T., Deodato, C. R., Andersen, R. A., Starkenburg, S. R., Barlow, S.B., Cattolico, R.A. 2019 Chrysochromulina: Genomic assessment and taxonomic diagnosis of the type species for an oleaginous algal clade. Algal Res., 37, 307-319. Keywords: Haptophyta; Chrysochromulina genome; nad evolution; FtsZ phylogeny; Meiosis; Taxon diagnosis Strain(s): 562  DOI: 10.1016/j.algal.2018.11.023 Howe, A. T., Bass, D., Vickerman, K., Chao, E. E., Cavalier-Smith, T. 2009 Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist, 160, 159-189. Keywords: Glissomonadida; Sandonidae; Allapsidae; Bodomorphidae; Heteromita; phylogeny Strain(s): 2414,  2415,  2418,  2419,  2421,  2422,  2423,  2424,  2425,  2426,  2427,  2428,  2429,  2430  PubMed: 19324594 DOI: 10.1016/j.protis.2008.11.007 Htet, AN., Noguchi, M., Ninomiya, K., Tsuge, Y., Kuroda, K., Kajita, S., Masai, E., Katayama, Y., Shikinaka, K., Otsuka, Y., Nakamura, M., Honda, R., Takahashi, K. 2018 Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid. J. Biosci. Bioeng., 125, 717-722. Keywords: Microalgae; Chlorella emersonii; Acid hydrolysis; Fermentation; Escherichia coli; 2-pyrone 4,6-dicarboxylic acid Strain(s): 2151  PubMed: 29395960 DOI: 10.1016/j.jbiosc.2017.12.026 Hu, ZY., Li, YT., Sommerfeld, M., Chen, F., Hu, Q. 2008 Enhanced protection against oxidative stress in an astaxanthin-overproduction Haematococcus mutant (Chlorophyceae). Eur. J. Phycol., 43, 365-376. Keywords: astaxanthin; carotenogenesis; flow cytometry; Haematococcus pluvialis; oxidative stress; pigment mutant Strain(s): 144  DOI: 10.1080/09670260802227736 Hua, C., Ludsinb, S. A., Martinc, J. F., Dittmannd, E., Lee, J. 2018 Mycosporine-like amino acids (MAAs)—producing Microcystis in Lake Erie:Development of a qPCR assay and insight into its ecology. Harmful Algae, 77, 1–10. Keywords: Shinorine; Porphyra; UV irradiation; Sunscreen; Eutrophication; Harmful algal bloom Strain(s): 843  PubMed: 30005796 DOI: 10.1016/j.hal.2018.05.010 Hua, J., Lee, R.W. 2012 Factors affecting codon bias in the mitochondrial genomes of the Streptophyte Mesostigma viride and the Chlorophyte Chlamydomonas reinhardtii. J. Eucaryot. Microbiol., 59, 287-289. Keywords: Green algae; mutation; selection; synonymous codon usage Strain(s): 296  PubMed: 22340021 DOI: 10.1111/j.1550-7408.2011.00613.x Hua, JM., Smith, D. R., Borza, T., Lee, R. W. 2012 Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas. Protist, 163, 105-115. Keywords: Chlamydomonas; genome architecture; Mesostigma; mutation rate; silent substitution rate Strain(s): 296,  476  PubMed: 21621456 DOI: 10.1016/j.protis.2011.04.003 Huang, Y., Lee, H., Lai, C. 2013 Engineering of the growth environment of microalgae with high biomass and lipid productivity. J. Nanosci. Nanotechnol., 13, 2117-2121. Keywords: Microalgae; Cultivation Environment; Carbon Dioxide; Biomass Productivity; Lipid Productivity Strain(s): 2199  DOI: 10.1166/jnn.2013.6877 Huang, Y.-T. & Su, C.-P. 2014 High lipid content and productivity of microalgae cultivating under elevated carbon dioxide. Int. J. Environ. Sci. Technol., 11, 703-710. Keywords: Biodiesel; Chlorella; Global warming; Light intensity Strain(s): 2173  DOI: 10.1007/s13762-013-0251-y Huang, Y-T., Lai, C-W., Wu, B-W., Lin, K-S., Wu, J.C.S., Md Shahriar A Hossain, Yamauchi, Y., Wu, C.-W. 2017 Advances in bioconversion of microalgae with high biomass and lipid productivity. J. Taiwan Inst. Chem. Eng., 79, 37-42. Keywords: Bioconversion; Fatty acid; methyl esters; Illumination; Microalgae Strain(s): 2199  DOI: 10.1016/j.jtice.2017.05.026 Hunsperger, H. M., Randhawa, T., Cattolico, R. A. 2015 Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol. Biol., 15, 16 (article ID). Keywords: Chlorophyll synthesis; Horizontal gene transfer; Endosymbiotic gene transfer; Gene duplication; Algae; Protochlorophyllide Strain(s): 293,  360,  484,  1363,  2140  PubMed: 25887237 DOI: 10.1186/s12862-015-0286-4 Huss, V. A. R., Wein, K. H., Kessler, E. 1988 Deoxyribonucleic acid reassociation in the taxonomy of the genus Chlorella. Arch. Mikrobiol., 150, 509-511. Strain(s): 2163  Hwang, S. W., Choi, H. I., Sim, S. J. 2019 Acidic cultivation of Haematococcus pluvialis for improved astaxanthin production in the presence of a lethal fungus. Bioresour. Technol., 278, 138-144. Keywords: Haematococcus pluvialis; Paraphysoderma sedebokerensis; Acidic cultivation; Stress relief; Astaxant Strain(s): 144  PubMed: 30685617 DOI: 10.1016/j.biortech.2019.01.080 Ichimura, T. 1971 Sexual cell division and conjugation-papilla formation in sexual reproduction of Closterium strigosum. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, pp. 208-214. Strain(s): 66,  262  Ichimura, T. 1973 Culture of microalgae (6). Iden, 27, 97-101 (in Japanese). Strain(s): 66,  173,  175,  179,  180,  181,  183,  198,  262,  338,  450  Ichimura, T. 1973 The life cycle and its control in some species of Closterium, with special reference to the biological species problems. Thesis D. Sci., University of Tokyo, 69 pp., 11 tables, 40 figs. Strain(s): 66,  67,  68,  125,  127,  174,  175,  176,  177,  179,  180,  181,  182,  183,  185,  198,  202,  262,  337,  338,  450,  451  Ichimura, T. 1981 Mating types and reproductive isolation in Closterium ehrenbergii Meneghini. Bot. Mag. Tokyo, 94, 325-334. Keywords: biosystematic study; Closterium ehrenbergii; mating group; mating type; reproductive isolation Strain(s): 228,  229  DOI: 10.1007/BF02493393 Ichimura, T. 1983 Hybrid inviability and predominant survival of mating type minus progeny in laboratory crosses between two closely related mating groups of Closterium ehrenbergii. Evolution, 37, 252-260. Strain(s): 228,  229  Ichimura, T. 1997 Chlamydomonas pulsatilla Wollenweber from a supra-littoral rockpool on a small island offshore the city of Muroran, Hokkaido, Japan. Algol. Stud., 85, 23-29. Keywords: Chlamydomonas pulsatilla; euryhaline species; acetate; nutrition; supra-littoral rockpool Strain(s): 122  Ichimura, T. & Itoh, T. 1977 17. Preservation methods of microalgae (I) [17. Bisaisôrui no hozonhô (I)]. In Preservation methods of microorganisms [Biseibutsu Hozonhô], Ed. by Nei, T., University of Tokyo Press, Tokyo, pp. 355-373 (in Japanese). Strain(s): 19,  21,  22,  23,  24,  27,  28,  30,  31,  32,  33,  34,  36,  37,  38,  39,  40,  41,  44,  45,  46,  47,  48,  49,  50,  122,  123,  127,  131,  144,  152,  173,  175,  179,  180,  181,  182,  183,  185,  198,  200,  203,  206,  217,  226,  227,  241,  266,  267,  268,  295,  309,  310,  334,  338,  379,  436,  448,  450,  455,  527  Ichimura, T. & Kasai, F. 1984 Post-zygotic isolation between allopatric mating groups of Closterium ehrenbergii Meneghini (Conjugato-phyceae). Phycologia, 23, 77-85. Strain(s): 228,  229  DOI: 10.2216/i0031-8884-23-1-77.1 Ichimura, T. & Kasai, F. 1984 Time lapse analyses of sexual reproduction in Closterium ehrenbergii (Conjugatophyceae). J. Phycol., 20, 258-265. Keywords: Closterium ehrenbergii; conjugation; desmids; mating type; sexual reproduction Strain(s): 228,  229  DOI: 10.1111/j.0022-3646.1984.00258.x Ichimura, T. & Kasai, F. 1985 Studies on the life cycle of Spinoclosterium cuspidatum (Bailey) Hirano (Conjugatophyceae). Phycologia, 24, 205-216. Strain(s): 325  DOI: 10.2216/i0031-8884-24-2-205.1 Ichimura, T. & Kasai, F. 1987 Time-lapse analyses of sexual isolation between two closely related mating groups of the Closterium ehrenbergii species complex (Chlorophyta). J. Phycol., 23, 523-534. Keywords: Closterium ehrenbergii; desmids; mating group; multiple-choice mating; no-choice mating; sexual interactions; sexual isolation; time-lapse photomicrography Strain(s): 228,  229  DOI: 10.1111/j.1529-8817.1987.tb04201.x Ichimura, T. & Kasai, F. 1989 Life cycles of homothallic and heterothallic clones of Triploceras gracile Bailey (Desmidiaceae, Chlorophyta). Phycologia, 28, 212-221. Strain(s): 789,  790,  791,  792,  793,  794,  795,  796  DOI: 10.2216/i0031-8884-28-2-212.1 Ichimura, T. & Watanabe, M. 1974 The Closterium calosporum complex from the Ryukyu Islands - Variation and taxonomical problems. Mem. Natn. Sci. Mus. Tokyo, 7, 89-102, pls. 13-14. Strain(s): 163,  164,  165,  168,  186,  187,  194,  339,  340,  341  Ichimura, T. & Watanabe, M. M. 1977 An axenic clone of Microcystis aeruginosa Kutz. emend. Elenkin from Lake Kasumigaura. Bull. Jpn. Soc. Phycol., 25, 177-181. Strain(s): 44  Ichinomiya, M., Kuwata, A. 2015 Seasonal variation in abundance and species composition of the Parmales community in the Oyashio region, western North Pacific. Aquat. Microb. Ecol., 75, 207-223. Keywords: Parmales; Seasonal variation; Species composition; Growth; Oyashio Current Strain(s): 3699,  3701  DOI: 10.3354/ame01756 Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J., 10, 2419-2434. Strain(s): 2565,  2682,  3369,  3370,  3371,  3699,  3700,  3701  PubMed: 27003244 DOI: 10.1038/ismej.2016.38 Ichinomiya, M., Nakamachi, M., Shimizu, Y., Kuwata, A. 2013 Growth characteristics and vertical distribution of Triparma laevis (Parmales) during summer in the Oyashio region, western North Pacific. Aquat. Microb. Ecol., 68, 107-116. Keywords: Triparma laevis; Parmales; Vertical distribution; Growth characteristics; Oyashio region Strain(s): 2565  DOI: 10.3354/ame01606 Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A. 2011 Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J. Phycol., 47, 144-151. Keywords: Bolidophyceae; diatoms; heterokonts; Parmales; PDMPO; phylogeny; stramenopiles; Triparma laevis Strain(s): 2565,  2682  PubMed: 27021720 DOI: 10.1111/j.1529-8817.2010.00926.x Ichinose, T. M. & Iwane, A. H. 2018 Cytological analyses by advanced electron microscopy. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 129-151. Keywords: FIB-SEM; SBF-SEM; EM-tomography; EM (electron microscopy); Block-face imaging; Cryo-TEM; Cryo-TEM tomography; Cyanidioschyzon merolae; Physical fixation Strain(s): 1804  DOI: 10.1007/978-981-10-6101-1_9 Iehara, M. 1990 Kinetic analysis of the growth of Chlorella vulgaris. Biotech. Bioeng., 36, 198-206. Strain(s): 227  PubMed: 18595068 DOI: 10.1002/bit.260360212 Iida, H., Nishii, I., Inouye, I. 2011 Embryogenesis and cell positioning in Platydorina caudata (Volvocaceae, Chlorophyta). Phycologia, 50, 530-540. Keywords: Volvocaceae; inversion; intercalation; cytoplasmic bridge; stalk; colony formation Strain(s): 728,  729  DOI: 10.2216/10-80.1 Iida, H., Ota, S., Inouye, I. 2013 Cleavage, incomplete inversion, and cytoplasmic bridges in Gonium pectorale (Volvocales, Chlorophyta). J. Plant Res., 126, 699-707. Keywords: Cytoplasmic bridge; Gonium; Inversion; Multicellularity; Transmission electron microscopy; Volvocales Strain(s): 645  PubMed: 23455615 DOI: 10.1007/s10265-013-0553-7 Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238. Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model Strain(s): 1,  15,  548,  670,  716  PubMed: 17591448 DOI: 10.1016/j.ympev.2007.05.003 Iino, M. & Hashimoto, H. 2003 Intermediate features of cyanelle division of Cyanophora paradoxa (Glaucocystophyta) between cyanobacterial and plastid division. J. Phycol., 39, 561-569. Keywords: chloroplast division; cyanelle; Cyanophora paradoxa; endosymbiosis; Glaucocystophyta; peptidoglycan; plastid dividing-ring; plastid division; plastid envelope Strain(s): 547  DOI: 10.1046/j.1529-8817.2003.02132.x Ikegami, S., Imai, I., Kato, J., Ohtake, H. 1995 Chemotaxis toward inorganic phosphate in the red tide alga Chattonella antiqua. J. Plankton Res., 17, 1587-1591. Strain(s): 1  DOI: 10.1093/plankt/17.7.1587 Ikehara, T., Kuniyoshi, K., Yamaguchi, H., Tanabe, Y., Sano, T., Yoshimoto, M., Oshiro, N., Nakashima, S., Yasumoto-Hirose, M. 2019 First report of Microcystis strains producing MC-FR and -WR toxins in Japan. Toxins, 11, 521 (article ID). Keywords: Cyanobacteria; Microcystis; microcystins; environmental water; liquid chromatographymass spectrometry; protein phosphatase 2A inhibition assay Strain(s): 4344,  4345  PubMed: 31505765 DOI: 10.3390/toxins11090521 Ikushima, T. 1975 Action of furylfuramide (AF-2) on chloroplasts of Euglena gracilis. Annu. Rep. Res. Reactor Inst. Kyoto Univ., 8, 83-85. Strain(s): 48  Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of aquatic humic substances on the growth of the cyanobacterium Microcystis aeruginosa. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 22, 555-560 (in Japanese with English summary). Keywords: aquatic humic substances; Microcystis aeruginosa; iron limitation; siderophore; Lake Kasumigaura Strain(s): 98  Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of iron limitation and aquatic humic substances on the growth of Microcystis aeruginosa. Can. J. Fish. Aquat. Sci., 56, 1929-1937. Strain(s): 98  DOI: 10.1139/f99-131 Imai, I., Fujimaru, D., Nishigaki, T. 2002 Co-culture of fish with macroalgae and associated bacteria: A possible mitigation strategy for noxious red tides in enclosed coastal sea. Fish. Sci., 68, 493-496. Keywords: red tide; mitigation; algicidal bacteria; macroalgae; co-culture of fish and macroalgae Strain(s): 1  DOI: 10.2331/fishsci.68.sup1_493 Imai, I., Hatano, M., Naito, K. 2004 Development of a chemically defined artificial medium for marine red tide-causing raphidophycean flagellates. Plankton Biol. Ecol., 95, 95-102. Keywords: Chattonella; Fibrocapsa; artificial media; molybdenum; iodine Strain(s): 1  Imai, I., Ishida, Y., Hata, Y. 1993 Killing of marine phytoplankton by a gliding bacterium Cytophaga sp., isolated from the coastal sea of Japan. Mar. Biol., 116, 527-532. Strain(s): 1  DOI: 10.1007/BF00355470 Imai, I., Ishida, Y., Sakaguchi, K., Hata, Y. 1995 Algicidal marine bacteria isolated from northern Hiroshima Bay, Japan. Fish. Sci., 61, 628-636. Keywords: algicidal bacteria; red tide; Chattonella; Alteromonas Strain(s): 1  DOI: 10.2331/fishsci.61.628 Imai, I., Ishida, Y., Sawayama, S., Hata, Y. 1991 Isolation of a marine gliding bacterium that kills Chattonella antiqua (Raphidophyceae). Nippon Suisan Gakkaishi, 57, 1409. Strain(s): 1  Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Detection and enumeration of microorganisms that are lethal to harmful phytoplankton in coastal waters. Plankton Biol. Ecol., 45, 19-29. Keywords: red tide; Chattonella; Heterosigma; killer bacteria; viruses Strain(s): 1  Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Relationships between dynamics of red tide-causing raphidophycean flagellates and algicidal micro-organisms in the coastal sea of Japan. Phycol. Res., 46, 139-146. Keywords: algicidal bacteria; Chattonella; Heterosigma; Raphidophyceae; red tide; virus Strain(s): 1  DOI: 10.1111/j.1440-1835.1998.tb00106.x Imai, I., Nakagiri, S., Nagai, K., Nagasaki, K., Itakura, S., Yamaguchi, M. 1998 Fluctuations of algicidal microorganisms against the harmful dinoflagellate Heterocapsa circularisquama in Ago Bay, Mie Prefecture, Japan. Bull. Nansei Natl. Fish. Res. Inst., 31, 53-61 (in Japanese with English summary). Keywords: red tide; Heterocapsa circularisquama; algicidal bacteria; viruses; Ago Bay Strain(s): 1  Imaizumi, M., Sekimoto, H., Noguchi, T. 2007 Induction of sex pheromone secretion and observations of the secretory pathway in the Closterium peracerosum-strigosum-littorale complex. Plant Sci., 173, 206-212. Keywords: Closterium peracerosum-strigosum-littorale; Immunoelectron microscopy; Protoplast release-inducing protein; Sex pheromone; Sexual reproduction; Zygote formation Strain(s): 67,  68  DOI: 10.1016/j.plantsci.2007.05.002 Imamura, N., Motoike, I., Noda, M., Adachi, K., Konno, A., Fukami, H. 2000 Argimicin A, a novel anti-cyanobacterial compound produced by an algae-lysing bacterium. J. Antibiotics, 53, 1317-1319. Strain(s): 102,  298  DOI: 10.7164/antibiotics.53.1317 Imamura, N., Motoike, I., Shimada, N., Nishikori, M., Morisaki, H., Fukami, H. 2001 An efficient screening approach for anti-Microcystis compounds based on knowledge of aquatic microbial ecosystem. J. Antibiotics, 54, 582-587. Strain(s): 102,  228  PubMed: 11560377 DOI: 10.7164/antibiotics.54.582 Imamura, S., Hanaoka, M., Tanaka, K. 2008 The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I. EMBO J., 27, 2317-2327. Strain(s): 3377  PubMed: 18668124 DOI: 10.1038/emboj.2008.151 Imamura, S., Kanesaki, Y., Ohnuma, M., Inouye, T., Sekine, Y., Fujiwara, T., Kuroiwa, T., Tanaka, K. 2009 R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 106, 12548-12553. Strain(s): 3377  PubMed: 19592510 DOI: 10.1073/pnas.0902790106 Imamura, S., Nomura, Y., Takemura, T., Pancha, I., Taki, K., Toguchi, K., Tozawa, Y., Tanaka K. 2018 The checkpoint kinase TOR (target of rapamycin) regulates expression of a nuclear‐encoded chloroplast RelA‐SpoT homolog (RSH) and modulates chloroplast ribosomal RNA synthesis in a unicellular red alga. Plant J., 94, 327-339. Keywords: RelA-SpoT homolog; ppGpp; red alga; ribosomal RNA; target of rapamycin Strain(s): 3377  PubMed: 29441718 DOI: 10.1111/tpj.13859 Imamura, S., Terashita, M., Ohnuma, M., Maruyama, S., Minoda, A., Weber, A. P. M., Inouye, T., Sekine, Y., Fujita, Y., Omata, T., Tanaka, K. 2010 Nitrate assimilatory genes and their transcriptional regulation in a unicellular red alga Cyanidioschyzon merolae: genetic evidence for nitrite reduction by a sulfite reductase-like enzyme. Plant Cell Physiol., 51, 707-717. Keywords: Cyanidioschyzon merolae; Nitrate assimilation; Nitrite reductase; Nitrogen regulation; Red alga; Sulfite reductase Strain(s): 3377  PubMed: 20375110 DOI: 10.1093/pcp/pcq043 Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017 Application of MALDI Biotyper to cyanobacterial profiling. Rapid Commun. Mass Spectrom., 31, 325-332. Strain(s): 73,  89,  102,  103,  107,  112,  298,  611,  808,  809,  835,  843,  989,  1025,  1043,  1058,  1071,  1099,  1642,  1652,  1672  PubMed: 27862451 DOI: 10.1002/rcm.7793 Imase, M., Ohko, Y., Takeuchi, M., Hanada, S. 2013 Estimating the viability of Chlorella exposed to oxidative stresses based around photocatalysis. Int. Biodeterior. Biodegrad., 78, 1-6. Keywords: Autofluorescence; Cell staining; Chlorella sorokiniana; Oxidative stress: TiO2 photocatalysis; Viability assay Strain(s): 2169  DOI: 10.1016/j.ibiod.2012.12.006 Imoto, Y., Kuroiwa, H., Yoshida, Y., Ohnuma, M., Fujiwara, T., Yoshida, M., Nishida, K., Yagisawa, F., Hirooka, S., Miyagishima, S.Y., Misumi, O., Kawano, S., Kuroiwa, T. 2013 Single-membrane-bound peroxisome division revealed by isolation of dynamin-based machinery. Proc. Nati. Acad. Sci. U. S. A., 110, 9583-9588. Strain(s): 3377  PubMed: 23696667 DOI: 10.1073/pnas.1303483110 Inaba, K., Hiraka, K., Kumagai, K., Hokura, A. 2023 Tellurium nanorods produced by the reduction of tellurate and tellurite inside unicellular algae. Chem. Lett., 52, 284-288. Keywords: Tellurium nanorod; Unicellular alga; X-ray analyses Strain(s): 2713  DOI: 10.1246/cl.230054 Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I. 2019 Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study. Harmful Algae, 84, 139-150. Keywords: Microcosm; Study; Chattonella; Harmful algal blooms (HAB); Seagrass; HAB ; prevention Strain(s): 1  PubMed: 31128798 DOI: 10.1016/j.hal.2018.12.004 Inaba, N., Watanabe, T., Sakami, T., Nishi, H., Tahara, Y., Imai, I. 2014 Temporal and spatial distribution of algicidal and growth-inhibiting bacteria in the coastal sea of southwest Japan. J. Plankton Res., 36, 388-397. Keywords: algicidal bacteria; growth-inhibiting bacteria; particle-associated bacteria; free-living bacteria; harmful algal blooms Strain(s): 1  DOI: 10.1093/plankt/fbt119 Inada, Y. 1958 Stimulatory and inhibitory effect of light on the nitrate assimilation by Chlorella. J. Gen. Appl. Microbiol., 4, 153-162. Strain(s): 2170  DOI: 10.2323/jgam.4.153 Inagaki, Y., Ehara, M., Watanabe, K. I., Hayashi-Ishimaru, Y., Ohama, T. 1998 Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria. J. Mol. Evol., 47, 378-384. Keywords: COXI phylogenetic tree; UGA codon; deviant genetic code; directional codon reassignment Strain(s): 12,  227,  274  PubMed: 9767683 DOI: 10.1007/PL00006395 Inagaki, Y., Hayashi-Ishimaru, Y., Ehara, M., Igarashi, I., Ohama, T. 1997 Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences. J. Mol. Evol., 45, 295-300. Keywords: mitochondrial COXI gene; Dinoflagellata; Apicomplexa; Kinetoplastida; Euglenophyta; endosymbiosis; genetic code; malarian circle Strain(s): 12,  381  DOI: 10.1007/PL00006233 Inamori, Y., Ohno, Y., Kaya, K., Watanabe, M. M., Sudo, R. 1990 Studies on the removal and decomposition of Microcystis viridis toxic substance in the bio-film reactor. Jpn. J. Water Poll. Res., 13, 525-530 (in Japanese with English summary). Keywords: Microcystis viridis; toxic substance cyanoviridin; bio-film reactor; hydraulic retention time Strain(s): 102  Inamura, E., Katayama, T., Taguchi, S. 2017 Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans. Plankton Benthos Res., 12, 15-24. Keywords: mycosporine-glycine; palythene; palythine; porphyra-334; shinorine Strain(s): 218  DOI: 10.3800/pbr.12.15 Inoue, Y., Hata, T., Kawai, S., Okamura,H., Nishida, T. 2010 Elimination and detoxification of triclosan by manganese peroxidase from white rot fungus. J. Hazard. Mater., 180, 764-767. Keywords: Triclosan; Bacterial growth inhibition; Algal growth inhibition; Manganese peroxidase; Ligninolytic enzymes; White rot fungi Strain(s): 35  PubMed: 20434837 DOI: 10.1016/j.jhazmat.2010.04.024 Inoue-Sakamoto, K., Nazifi, E., Tsuji, C., Asano, T., Nishiuchi, T., Matsugo, S., Ishihara, K., Kanesaki, Y., Yoshikawa, H., Sakamoto, T. 2018 Characterization of mycosporine-like amino acids in the cyanobacterium Nostoc verrucosum. J. Gen. Appl. Microbiol., 64, 203-211. Keywords: antioxidant; environmental adaptation; mycosporine-like amino acid (MAA); mys genes Strain(s): 2538,  2539  PubMed: 29709901 DOI: 10.2323/jgam.2017.12.003 Inoue-Sakamoto, K., Tanji, Y., Yamaba, M., Natsume, T., Masaura, T., Asano, T., Nishiuchi, T., Sakamoto, T. 2018 Characterization of extracellular matrix components from the desiccation-tolerant cyanobacterium Nostoc commune. J. Gen. Appl. Microbiol., 64, 15-25. Keywords: anhydrobiosis; desiccation tolerance; extracellular polysaccharide (EPS); superoxide dismutase (SOD); water stress protein (WspA) Strain(s): 2108,  2538,  3989,  3990,  3991  PubMed: 29225284 DOI: 10.2323/jgam.2017.03.001 Ioki, M., Ohkoshi, M., Nakajima, N., Nakahira-Yanaka, Y., Watanabe, M. M. 2012 Isolation of herbicide-resistant mutants of Botryococcus braunii. Bioresour. Technol., 109, 300-303. Keywords: Botryococcus braunii; Paraquat; Methyl viologen; Basta; Glufosinate Strain(s): 35,  119,  227,  230,  2235  PubMed: 21906932 DOI: 10.1016/j.biortech.2011.07.101 Irisarri, I., Darienko, T., Pröschold, T., Fürst-Jansen, J. M. R., Jamy, M., de Vries, J. 2021 Unexpected cryptic species among streptophyte algae most distant to land plants. Proc. R. Soc. B-Biol. Sci., 288, 20212168 (article ID). Keywords: plant terrestrialization; plant evolution; streptophytes; green algae; phylogenomics; phycology Strain(s): 160  PubMed: 34814752 DOI: 10.1098/rspb.2021.2168 Irshad, M., Myint, A. A., Hong, M. E., Kim, J., Sim, S. J. 2019 One-pot, simultaneous cell wall disruption and complete extraction of astaxanthin from Haematococcus pluvialis at room temperature. ACS Sustain. Chem. Eng., 7, 13898-13910. Keywords: Haematococcus pluvialis; One-pot method; Cell wall disruption; Extraction; Astaxanthin; Antioxidant activity; GRAS solvent Strain(s): 144  DOI: 10.1021/acssuschemeng.9b02089 Isaji, Y., Yoshikawa, C., Ogawa, N. O., Matsumoto, K., Makabe, A., Toyoda, S., Ishikawa, N. F., Ogawa, H., Saito, H., Honda, M. C., Ohkouchi, N. 2022 Nitrogen sources for phytoplankton in the Eastern Indian Ocean determined from δ15N of chlorophyll a and divinylchlorophyll a. Geochem. Geophys. Geosyst., 23, e2021GC010057 (article ID). Strain(s): 2086,  2885,  2887  DOI: 10.1029/2021GC010057 Isaka, N., Kawai-Toyooka, H., Matsuzaki, R., Nakada, T., Nozaki, H. 2012 Description of two new monoecious species of Volvox sect. Volvox (Volvocaceae, Chlorophyceae), based on comparative morphology and molecular phylogeny of cultured material. J. Phycol., 48, 759-767. Keywords: Chlorophyceae; cultures; molecular phylogeny; morphology; taxonomy; Volvocaceae; Volvox ferrisii sp. nov.; Volvox kirkiorum sp. nov.; Volvox sect. Volvox Strain(s): 543,  2736,  2737,  2738,  2739,  2740  PubMed: 27011093 DOI: 10.1111/j.1529-8817.2012.01142.x Iseki, M., Matsunaga, S., Murakami, A., Ohno, K., Shiga, K., Yoshida, K., Sugai, M., Takahashi, T., Hori, T., Watanabe, M. 2002 A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis. Nature, 415, 1047-1051. Strain(s): 48  PubMed: 11875575 DOI: 10.1038/4151047a Ishibashi, Y., Ichiyanagi, J., Gotoh, M., Konno, H. 1993 Culture conditions and characteristics of offensive odor-producing substance in the genus Uroglena [Uroglena zoku no baiyôjôken to syûkibusshitsu tokusei]. In Proceedings of 27th Annual Meeting of Japan Society on Water Environment [Dai 27kai Nippon Mizukankyô-Gakkai Nenkaikôensyû], pp. 282-283 (in Japanese with English title). Strain(s): 395  Ishibashi, Y., Oikawa, E., Honda, H., Adachi, T., Nakatochi, M. 2007 Analyses of growth factors of taste and odor producing algae by a fuzzy neural network. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 44, 255-263 (in Japanese with English summary). Keywords: musty odor; Phormidium tenue; Uroglena americana; fuzzy neural network; wind speed Strain(s): 512  DOI: 10.11532/proes1992.44.255 Ishida, K. & Murakami, M. 2000 Kasumigamide, an antialgal peptide from the cyanobacterium Microcystis aeruginosa. J. Org. Chem., 65, 5898-5900. Strain(s): 87,  439  PubMed: 10987919 DOI: 10.1021/jo991918f Ishida, K., Matsuda, H., Murakami, M. 1998 Four new microginins, linear peptides from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 54, 13475-13484. Strain(s): 99,  299  DOI: 10.1016/S0040-4020(98)00826-6 Ishida, K., Matsuda, H., Murakami, M. 1998 Micropeptins 88-A to 88-F, chymotrypsin inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 54, 5545-5556. Strain(s): 88  DOI: 10.1016/S0040-4020(98)00242-7 Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Kawaguchipeptin A, a novel cyclic undecapeptide from cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 52, 9025-9030. Strain(s): 88  DOI: 10.1016/0040-4020(96)00452-8 Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 The absolute stereochemistry of micropeptin 90. Tetrahedron Letters, 37, 9225-9226. Strain(s): 90  DOI: 10.1016/S0040-4039(96)02189-2 Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Kawaguchipeptin B, an antibacterial cyclic undecapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 724-726. Strain(s): 88  DOI: 10.1021/np970146k Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Microginins 299-A and -B, leucine aminopeptidase inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-299). Tetrahedron, 53, 10281-10288. Strain(s): 299  DOI: 10.1016/S0040-4020(97)00684-4 Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Micropeptins 478-A and -B, plasmin inhibitors from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 184-187. Strain(s): 478  DOI: 10.1021/np9606815 Ishida, K., Murakami, M., Matsuda, H., Yamaguchi, K. 1995 Micropeptin 90, a plasmin and trypsin inhibitor from the blue-green alga Microcystis aeruginosa (NIES-90). Tetrahedron Letters, 36, 3535-3538. Strain(s): 90  DOI: 10.1016/0040-4039(95)00547-P Ishida, K., Nakagawa, H., Murakami, M. 2000 Microcyclamide, a cytotoxic cyclic hexapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 63, 1315-1317. Strain(s): 298  PubMed: 11000050 DOI: 10.1021/np000159p Ishida, K., Okita, Y., Matsuda, H., Okino, T., Murakami, M. 1999 Aeruginosins, protease inhibitors from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 55, 10971-10988. Strain(s): 89,  98,  298  DOI: 10.1016/S0040-4020(99)00621-3 Ishida, K., Welker, M., Christiansen, G., Cadel-Six, S., Bouchier, C., Dittmann, E., Hertweck, C., de Marsac, N. T. 2009 Plasticity and evolution of aeruginosin biosynthesis in Cyanobacteria. Appl. Environ. Microbiol., 75, 2017-2026. Strain(s): 98,  843  PubMed: 19201978 DOI: 10.1128/AEM.02258-08 Ishida, T., Watanabe, M. M., Sugiyama, J., Yokota, A. 2001 Evidence for polyphyletic origin of the members of the orders of Oscillatoriales and Pleurocapsales as determined by 16S rDNA analysis. FEMS Microbiol. Lett., 201, 79-82. Keywords: cyanobacterium; Pleurocapsales; 16S rDNA; phylogeny Strain(s): 27,  208,  510,  2116,  2118,  2119,  2128  PubMed: 11445171 DOI: 10.1111/j.1574-6968.2001.tb10736.x Ishida, T., Yokota, A., Sugiyama, J. 1997 Phylogenetic relationships of filamentous cyanobacterial taxa inferred from 16S rRNA sequence divergence. J. Gen. Appl. Microbiol., 43, 237-241. Keywords: filamentous cyanobacteria; molecular phylogeny; Oscillatoriales; 16S rRNA Strain(s): 27,  208,  510,  2116,  2118,  2119,  2128  PubMed: 12501325 DOI: 10.2323/jgam.43.237 Ishida, Y. & Kimura, B. 1986 Photosynthetic phagotrophy of Chrysophyceae: evolutionary aspects. Microbiological Sciences, 3, 132-135. Strain(s): 395  PubMed: 3153154 Ishida, Y., Kimura, B., Nakahara, H., Kadota, H. 1982 Analysis of major nutrient effecting Uroglena americana bloom in the Northern Lake Biwa, by use of algal bioassay. Bull. Jpn. Soc. Sci. Fish., 48, 1281-1287. Strain(s): 395  DOI: 10.2331/suisan.48.1281 Ishikawa, I. S. 1990 Characteristic structures of Spirulina trichome involved in gliding movement. Plant Morphol., 2, 7-14. Keywords: gliding movement; Spirulina; thylakoid; trichome; motive force Strain(s): 27  DOI: 10.5685/plmorphol.2.7 Ishikawa, M., Takahashi, F., Nozaki, H., Nagasato, C., Motomura, T., Kataoka, H. 2009 Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes. Planta, 230, 543-552. Keywords: aureochrome (AUREO); BL receptor; bZIP; LOV; stramenopiles Strain(s): 1,  280,  1017  PubMed: 19544070 DOI: 10.1007/s00425-009-0967-6 Ishikawa, N. K., Takahashi, K., Sakakibara, T., Nomura, S., Ito, A. 2022 Degradation of sulfamonomethoxine in solution using pulsed plasma discharge - identification of by-products and toxicity of treated solution to green algae. Water Sci. Technol., 86, 2430–2440. Keywords: acute toxic test; LC-MS/MS; Raphidocelis subcapitata; radical Strain(s): 35  PubMed: 36378190 DOI: 10.2166/wst.2022.341 Ishimitsu, M. & Chihara, M. 1984 Four species of Cryptomonas (Class Cryptophyceae) in Japan. J. Jpn. Bot., 59, 161-169. Strain(s): 274,  275,  276,  277,  278,  279,  280,  281,  282,  344,  345,  346,  347,  348  Ishinishi, R., Matsuura, H., Tanaka, S., Nozawa, S., Tanada, K., Kawashita, N., Fujiyama, K., Miyasaka, H., Hirata, K. 2018 Isolation and characterization of a stress-responsive gene encoding a CHRD domain-containing protein from a halotolerant green alga. Gene, 640, 14-20. Keywords: Stress response; Chlamydomonas reinhardtii; Secretory protein; Recombinant protein; Unknown function Strain(s): 2235  PubMed: 29017964 DOI: 10.1016/j.gene.2017.10.012 Ishitani, Y., Ciacci, C., Ujiié, Y., Tame, A., Tiboni, M., Tanifuji, G., Inagaki, Y., Frontalini, F. 2023 Fascinating strategies of marine benthic organisms to cope with emerging pollutant: Titanium dioxide nanoparticles. Environ. Pollut., 330, 121538 (article ID). Keywords: Marine pollution; Foraminifera; Mucus; Reactive oxygen species; Transcriptome Strain(s): 2257  PubMed: 37011780 DOI: 10.1016/j.envpol.2023.121538 Ishitsuka, M. O., Kusumi, T., Kakisawa, H., Kaya, K., Watanabe, M. M. 1990 Microviridin: a novel tricyclic depsipeptide from the toxic cyanobacterium Microcystis viridis. J. Am. Chem. Soc., 112, 8180-8182. Strain(s): 102  Isono, T. & Katoh, T. 1982 Cylindrical phycobilisomes from a blue-green alga, Anabaena variabilis. Plant Cell Physiol., 23, 1347-1355. Keywords: blue-green alga (Anabaena variabilis); electron micrograph; cylindrical phycobilisomes; phycobilisomes; protein assembly Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a076481 Isono, T. & Katoh, T. 1983 Subparticles of Anabaena phycobilisomes. 1. Reconstruction of allophycocyanin cores and entire phycobilisomes. Plant Cell Physiol., 24, 357-368. Keywords: allophycocyanin (assembly); blue-green algae (Anabaena variabilis); in vitro association (phycobilisome); phycobilisome core; phycobilisome; protein assembly Strain(s): 2093  Isono, T., Yamashita, K., Momose, D., Kobayashi, H., Kitamura, M., Nishiyama, Y., Hosoya, T., Kanda, H., Kudo, A., Okada, N., Yagi, T., Nakata, K., Mineki, S., Tokunaga, E. 2015 Scan-free absorbance spectral imaging A(x, y, λ) of single live algal cells for quantifying absorbance of cell suspensions. PLoS One, 10, e0128002 (article ID). Strain(s): 2238  PubMed: 26061268 DOI: 10.1371/journal.pone.0128002 Isozaki, A., Nakagawa, Y., Loo, M. H., Shibata, Y., Tanaka, N., Setyaningrum, D. L., Park, J.-W., Shirasaki, Y., Mikami, H., Huang, D., Tsoi, H., Riche, C. T., Ota, T., Miwa, H., Kanda, Y., Ito, T., Yamada, K., Iwata, O., Suzuki, K., Ohnuki, S., Ohya, Y., Kato, Y., Hasunuma, T., Matsusaka, S., Yamagishi, M., Yazawa, M., Uemura, S., Nagasawa, K., ,Watarai, H. Di Carlo, D., Goda, K. 2020 Sequentially addressable dielectrophoretic array for high-throughput sorting of large-volume biological compartments. Sci. Adv., 6, eaba6712 (article ID). Strain(s): 48,  4141  PubMed: 32524002 DOI: 10.1126/sciadv.aba6712 Issarapayup, K., Powtongsook, S., Pavasant, P. 2009 Flat panel airlift photobioreactors for cultivation of vegetative cells of microalga Haematococcus pluvialis. J. Biotechnol., 142, 227-232. Keywords: airlift photobioreactor; vegetative cells; astaxanthin; bioprocess design; microalga Strain(s): 144  PubMed: 19422861 DOI: 10.1016/j.jbiotec.2009.04.014 Issarapayup, K., Powtongsook, S., Pavasant, P. 2011 Economical review of Haematococcus pluvialis culture in flat-panel airlift photobioreactors. Aquac. Eng., 44, 65-71. Keywords: Airlift photobioreactor; Microalga; Economical analysis; Bioprocess design Strain(s): 144  DOI: 10.1016/j.aquaeng.2011.03.002 Ito, T., Okabe, K., Mori, M. 2018 Growth reduction of Microcystis aeruginosa by clay ball elution solution. Appl. Clay Sci., 162, 223-229. Keywords: Cyanobacterial bloom; Clay ball; Microcystis aeruginosa; Silicate; Diatom; Concrete Strain(s): 71,  1068  DOI: 10.1016/j.clay.2018.06.018 Itoh, Y., Murakami, H., Ikeda, R. 1993 Studies on the growth limiting nutrients of red tide plankton in the tidal area [Kanchô-iki ni okeru akashio gen'in sôrui no zôshoku yokusei inshi no suitei]. Proc. Coast. Engineering, JSCE [Kaigan Kôgaku Ronbun-shû], 40, 1001-1005 (in Japanese without English title). Strain(s): 323  Itou, Y., Ishida, K., Shin, H. J., Murakami, M. 1999 Oscillapeptins A to F, serine protease inhibitors from the three strains of Oscillatoria agardhii. Tetrahedron, 55, 6871-6882. Strain(s): 204,  205,  596  DOI: 10.1016/S0040-4020(99)00341-5 Itou, Y., Okada, S., Murakami, M. 2001 Two structural isomeric siderophores from the freshwater cyanobacterium Anabaena cylindrica (NIES-19). Tetrahedron, 57, 9093-9099. Keywords: iron; sidenophore; cyanobacteria; Anabaena cylindrica; CAS Strain(s): 19  DOI: 10.1016/S0040-4020(01)00934-6 Itou, Y., Suzuki, S., Ishida, K., Murakami, M. 1999 Anabaenopeptins G and H, potent carboxypeptidase A inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-595). Bioorg. Med. Chem. Lett., 9, 1243-1246. Strain(s): 595  PubMed: 10340607 DOI: 10.1016/S0960-894X(99)00191-2 Iwahori, K., Miyata, N., Umeda, Y., Aoyama, K., Shimoi, K., Kinae, N. 1999 Applicability of environmental microorganisms to alkaline single cell gel electrophoresis (comet) assay. Jpn. J. Water Treat. Biol., 35, 261-270 (in Japanese with English summary). Keywords: comet assay; DNA damage; environmental microorganisms; Euglena gracilis; cell lysis; unwinding; electrophoresis; SDS; γ-irradiation Strain(s): 49,  122,  403  Iwahori, K., Miyata, N., Yamamoto, Y., Sone, D., Aoyama, K. 2004 Normalization of DNA damage indices in comet assay for comparing with various mutagenicity tests. Jpn. J. Water Treat. Biol., 40, 63-70. Keywords: comet assay; tail moment; normalization; mutagenicity test Strain(s): 49  DOI: 10.2521/jswtb.40.63 Iwai, M., Hori, K., Sasaki-Sekimoto, Y., Shimojima, M., Ohta, H. 2015 Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation–inducible promoter from Chlamydomonas reinhardtii. Front. Microbiol. 6, 912 (article ID). Keywords: algae; Nannochloropsis; phosphorus starvation; inducible promoter; triacylglycerol Strain(s): 2145  PubMed: 26441858 DOI: 10.3389/fmicb.2015.00912 Iwai, S., Fujita, K., Takanishi, Y., Fukushi, K. 2019 Photosynthetic endosymbionts benefit from host’s phagotrophy, including predation on potential competitors. Curr. Biol., 29, 3114-3119. Strain(s): 227  PubMed: 31495588 DOI: 10.1016/j.cub.2019.07.074 Iwami, N., Inamori, Y., Sugiura, N., Matsumura, M. 1996 Degradation characteris-tics of toxic Microcystis viridis by Mastigophora, Monas guttula using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 19, 140-146. Keywords: degradation; Microcystis; microflagellate; toxic substance; aquatic large scale microcosm Strain(s): 102  Iwamoto, K. & Ikawa, T. 2000 A novel glycolate oxidase requiring flavin mononucleotide as the cofactor in the prasinophycean alga Mesostigma viride. Plant Cell Physiol., 41, 988-991. Keywords: flavin mononucleotide (FMN)-requiring enzyme; glycolate metabolism; glycolate oxidase; glycolate-oxidizing enzyme; Mesostigma viride; Prasinophyceae Strain(s): 296  PubMed: 11038060 DOI: 10.1093/pcp/pcd020 Iwamoto, K. & Shiraiwa, Y. 2003 Characterization of NADH nitrate reductase from the coccolithophorid Emiliania huxleyi (Lohman) Hay & Mohler (Haptophyceae). Mar. Biotechnol., 5, 20-26. Keywords: coccolithophorid; Emiliania huxleyi; enzyme purification; nitrate reductase; nitrate utilization Strain(s): 837  PubMed: 12925915 DOI: 10.1007/s10126-002-0051-8 Iwamoto, K. & Shiraiwa, Y. 2012 Characterization of intracellular iodine accumulation by iodine-tolerant microalgae. Procedia Environ. Sco., 15, 34-42. Keywords: growth stimulation; growth inhibition; haptophyte; iodine; iodine accumulation Strain(s): 377,  837,  838  DOI: 10.1016/j.proenv.2012.05.007 Iwamoto, K. & Shiraiwa, Y. 2017 Accumulation of cesium by aquatic plants and algae. In Impact of Cesium on Plants and the Environment, Eds. by Gupta, D. & Walther, C., Springer International Publishing, pp. 171-185. Keywords: Eustigmatophycean alga; Vacuoliviride crystalliferum; Fukushima 1st Nuclear Power Plant Accident; High cesium-accumulating microalgae; Phytoremediation; Radioactive cesium Strain(s): 329,  1458,  2131,  2352  DOI: 10.1007/978-3-319-41525-3_10 Iwamura, T. 1960 Distribution of nucleic acids among subcellular fractions of Chlorella. Biochim. Biophys. Acta, 42, 161-163. Strain(s): 2170  PubMed: 13718345 DOI: 10.1016/0006-3002(60)90766-6 Iwamura, T. 1962 Cellular distributions and properties of nucleic acid species in Chlorella. In Symposium in Institute of Applied Microbiology, University of Tokyo, Vol. III, pp. 259-278 (in Japanese). Strain(s): 2170  Iwamura, T. 1962 Characterization of the turnover of chloroplast deoxyribonucleic acid in Chlorella. Biochim. Biophys. Acta, 61, 472-474. Strain(s): 2170  DOI: 10.1016/0926-6550(62)90155-X Iwamura, T. 1965 Change of nucleic acid content in Chlorella cells during the course of their life-cycle. J. Biochem., 42, 575-589. Strain(s): 2170  Iwamura, T. 1966 Nucleic acid in chloroplasts and metabolic DNA. Progr. Nucl. Acid Res. Mol. Biol., 5, 133-155. Strain(s): 2170  DOI: 10.1016/S0079-6603(08)60233-0 Iwamura, T. 1970 Phylogenetic aspects of algal biochemistry (1) DNA species in algae. Ann. NY Acad. Sci., 175, 488-510. Strain(s): 2170  Iwamura, T. 1987 The feasibility of Chlorella as the exchanger of CO2 for O2 and the food resources in the space station. In Biological Sciences in Space 1986, Eds. by Watanabe, S. et al., MYU Research, Tokyo, pp. 257-264. Strain(s): 2170  Iwamura, T. & Aoshima, J. 1984 Multiplication of chloroplast DNA. Protein, Nucleic Acid and Enzyme, 29, 191-201 (in Japanese). Strain(s): 2170  Iwamura, T. & Kuwashima, S. 1964 Formation of adenosine 5-triphosphate from polyphosphate by a cell-free extract from Chlorella. J. Gen. Appl. Microbiol., 10, 83-86. Strain(s): 2170  DOI: 10.2323/jgam.10.83 Iwamura, T. & Kuwashima, S. 1964 Further observations on the deoxyribonucleic acid species in Chlorella showing light-dependent metabolic turnover. Biochim. Biophys. Acta, 82, 678-679. Strain(s): 2170  PubMed: 14156741 Iwamura, T. & Kuwashima, S. 1969 Two DNA species in chloroplasts of Chlorella. Biochim. Biophys. Acta, 174, 330-339. Strain(s): 2170  PubMed: 5766301 DOI: 10.1016/0005-2787(69)90258-5 Iwamura, T. & Muto, N. 1964 Incorporation of 5-bromouracil into the two kinds of DNA in Chlorella. Plant Cell Physiol., 5, 359-360. Strain(s): 2170  Iwamura, T. & Myers, J. 1959 Changes in the content and distribution of the nucleic acid bases in Chlorella during the life cycle. Arch. Biochem. Biophys., 84, 267-277. Strain(s): 2170  PubMed: 14406172 DOI: 10.1016/0003-9861(59)90591-0 Iwamura, T., Hase, E., Moriyama, Y., Tamiya, H. 1955 Life cycle of the green alga Chlorella with special reference to the protein and nucleic acids contents of cells in successive formative stages. In A.I. Virtanen homage volume, Biochemistry of Nitrogen, Helsinki, pp. 89-103. Strain(s): 2170  Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. I. Chromatographic analysis of the acid-soluble nucleotides. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 577-586. Strain(s): 2170  Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. II. Quantitative changes in component-nucleotides of the acid-soluble fraction of algal cells during their life-cycle. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 587-596. Strain(s): 2170  Iwamura, T., Katoh, K., Nishimura, T. 1982 Semi-conservative replication of chloroplast DNA in synchronized Chlorella. Cell Struct. Funct., 7, 71-86. Strain(s): 2170  DOI: 10.1247/csf.7.71 Iwamura, T., Kunieda, R. Kuwashima, S., Nishimura, T. 1988 Inhibition of growth of Chlorella by various drugs. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 23, 1-11. Strain(s): 2170  Iwamura, T., Nagai, H., Ichimura, S. 1970 Improved methods for determining contents of chlorophyll, protein, ribonucleic acid, and deoxyribonucleic acid in planktonic populations. Int. Revue Ges. Hydrobiol., 55, 131-147. Strain(s): 2170  DOI: 10.1002/iroh.19700550106 Iwamura, T., Takeda, Y., Nishimura, T. 1990 A c-myc like DNA fragment in Chlorella. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 24, 23-40 (in Japanese). Strain(s): 2170  Iwasaka, M., Mizukawa, Y. 2014 Magneto-optical properties of biogenic photonic crystals in algae. J. Appl. Phys., 115, 17B501 (article ID). Strain(s): 1304,  1313  DOI: 10.1063/1.4861556 Iwasaka, M., Mizukawa, Y. 2015 Effect of intense magnetic fields on the convection of biogenic guanine crystals in aqueous solution. J. Appl. Phys., 117, 17E127 (article ID). Strain(s): 407  DOI: 10.1063/1.4917330 Iwasaki, H. & Sasada, K. 1969 Studies on the red tide dinoflagellates - II. On Heterosigma inlandica appeared in Gokasho Bay, Shima Peninsula. Bull. Jpn. Soc. Sci. Fish., 35, 943-947 (in Japanese with English summary). Strain(s): 5  Iwase, S., Abe, T. 2010 Identification and change in concentration of musty-odor compounds during frowth in blue-green algae. J. Sch. Marine Sci. Tech., Tokai Univ., 8, 27-33. Strain(s): 512,  2119  Iwata, H., Haji, A., Hashimoto, K., Mitsuyanagi, K., Kanegae, Y. 1991 Methods for producing heat-unsoluble β-1,3-glucan [Kanetsu gyôkosei β-1,3-glucan no seizôhô]. In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Hei3-163102, 5 pp. (in Japanese). Strain(s): 47,  48,  49  Iwataki, M., Botes, L., Sawaguchi, T., Sekiguchi, K., Fukuyo, Y. 2003 Cellular and body scale structure of Heterocapsa ovata sp. nov. and Heterocapsa orientalis sp. nov. (Peridiniales, Dinophyceae). Phycologia, 42, 629-637. Strain(s): 472  DOI: 10.2216/i0031-8884-42-6-629.1 Iwataki, M., Hansen, G., Sawaguchi, T., Hiroishi, S., Fukuyo, Y. 2004 Investigations of body scales in twelve Heterocapsa species (Peridiniales, Dinophyceae), including a new species H. pseudotriquetra sp. nov. Phycologia, 43, 394-403. Strain(s): 420,  472,  473  DOI: 10.2216/i0031-8884-43-4-394.1 Iwataki, M., Lum, W. M., Kuwata, K., Takahashi, K., Arima, D., Kuribayashi, T., Kosaka, Y., Hasegawa, N., Watanabe, T., Shikata, T., isada, T., Orlova, T. Y., Sakamoto, S. 2022 Morphological variation and phylogeny of Karenia selliformis (Gymnodiniales, Dinophyceae) in an intensive cold-water algal bloom in eastern Hokkaido, Japan. Harmful Algae, 114, 102204 (article ID). Strain(s): 4541,  4542,  4543,  4544  PubMed: 35550287 DOI: 10.1016/j.hal.2022.102204 Izumi, Y., Aikawa, S., Matsuda, F., Hasunuma, T., Kondo, A. 2013 Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen. J. Chromatogr. B, 930, 90-97. Keywords: Size-exclusion chromatography; Native glycogen; Qantitative analysis; Polyhydroxy methacrylate; Microalgae; Arthrospira platensis Strain(s): 39  PubMed: 23727872 DOI: 10.1016/j.jchromb.2013.04.037 Jaiswal, T. P., Chakraborty, S., Singh, P., Mishra, A. K., Singh, S. S. 2021 Description of hot spring dwelling Mastigocladus ambikapurensis sp. nov., using a polyphasic approach. Plant Syst. Evol., 307, 33 (article ID). Keywords: 16S rRNA gene; Cyanobacteria; ITS; Mastigocladus; Phylogeny Strain(s): 592,  3754  DOI: 10.1007/s00606-021-01755-2 Jang, M. H., Ha, K., Lucas, M. C., Joo, G. J., Takamura, N. 2004 Changes in microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish. Aquat. Toxicol., 68, 51-59. Keywords: Microcystis aeruginosa; microcystin; fish-induced defence; chemical cues; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi Strain(s): 44,  88,  99  PubMed: 15110469 DOI: 10.1016/j.aquatox.2004.02.002 Jang, M.-H., Ha, K., Jung, J.-M., Lee, Y.-J., Takamura, N. 2006 Increased microcystin production of Microcystis aeruginosa by indirect exposure of nontoxic cyanobacteria: potential role in the development Microcystis bloom. Bull. Environ. Contam. Toxicol., 76, 957-962. Strain(s): 74,  88,  204  Jang, M.-H., Ha, K., Takamura, N. 2007 Reciprocal allelopathic responses between toxic cyanobacteria (Microcystis aeruginosa) and duckweed (Lemna japonica). Toxicon, 49, 727-733. Keywords: Microcystis aeruginosa Kützing; Lemna japonica Landolg; microcystin; allelochemicals; reciprocal allelopathic responses; growth; eutrophic waters Strain(s): 103,  107  PubMed: 17207510 DOI: 10.1016/j.toxicon.2006.11.017 Jang, M.-H., Ha, K., Takamura, N. 2008 Microcystin production by Microcystis aeruginosa exposed to different stages of herbivorous zooplankton. Toxicon, 51, 882-889. Keywords: Microcystis aeruginosa; induced defense; different stages of zooplankton; infochemicals; intracellular microcystin; extracellular microcystin Strain(s): 88,  98,  103,  107  PubMed: 18243271 DOI: 10.1016/j.toxicon.2007.12.015 Jang, M.-H., Jung, J.-M., Takamura, N. 2007 Changes in microcystin production in cyanobacteria exposed to zooplankton at different population densities and infochemical concentrations. Limnol. Oceanogr., 52, 1454-1466. Strain(s): 88,  98,  107  DOI: 10.4319/lo.2007.52.4.1454 Jang, M-H., Ha, K., Joo, G-J., Takamura, N. 2003 Toxin production of cyanobacteria is increased by exposure to zooplankton. Freshw. Biol., 48, 1540-1550. Keywords: info-chemicals; microcystin production; Microcystis aeruginosa; zooplankton; zooplankton culture media filtrate Strain(s): 44,  87,  88,  99  DOI: 10.1046/j.1365-2427.2003.01107.x Jang, S. H., Jeong, H. J., Yoo, Y. D. 2018 Gambierdiscus jejuensis sp. nov., an epiphytic dinoflagellate from the waters of Jeju Island, Korea, effect of temperature on the growth, and its global distribution. Harmful Algae, 80, 149-157. Keywords: Benthic dinoflagellate; Ciguatera fish poisoning; Epiphytic dinoflagellate; Morphology; New species; Phylogeny Strain(s): 4120  PubMed: 30502807 DOI: 10.1016/j.hal.2018.11.007 Jangir, M. M., Chowdhury, S., Bhagavatula, V. 2021 Differential response of photosynthetic apparatus towards alkaline pH treatment in NIES-39 and PCC 7345 strains of Arthrospira platensis. Int. Microbiol., 24, 219-231. Keywords: Arthrospira platensis; Thylakoid; PBsomes; Alkalinity; PSII; PSI; TEM Strain(s): 39  PubMed: 33438119 DOI: 10.1007/s10123-021-00160-6 Jangir, M. M., Vani, B., Chowdhury, S. 2019 Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and In-silico studies: an indication towards alkaline pH acclimation. Physiol. Mol. Biol. Plants 25, 1175–1183. Keywords: Arthrospira platensis NIES-39; Na+/H+ antiporters; pH; Real-time PCR; CPA family Strain(s): 39  PubMed: 31564780 DOI: 10.1007/s12298-019-00687-z Jannel, S., Caro, Y., Bermudes, M., Petit, T. 2023 Screening for microalgal biodiversity from Reunion Island in search of potential sources of natural astaxanthin. J. Appl. Phycol., 35, 2659–2673. Keywords: Microalgal diversity; Wild strains; Astaxanthin; Haematococcus lacustris; Dysmorphococcus spp.; Reunion Island Strain(s): 227  DOI: 10.1007/s10811-023-03077-x Janouskovec, J., Horák, A., Oborník, M., Lukes, J., Keeling, P. J. 2010 A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc. Natl. Acad. Sci. U. S. A., , 10949-10954. Keywords: Apicomplexa: Chromera velia: CCMP3155: plastid evolution: chloroplast genome Strain(s): 4391  PubMed: 20534454 DOI: 10.1073/pnas.1003335107 Jeong, S.-Y. & Son, H.-J. 2021 Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides. J. Microbiol., 59, 389-400. Keywords: algicide; Bacillus sp. SY-1; Cochlodinium polykrikoides; harmful algal bloom; mycosubtilin Strain(s): 23,  227,  238,  298,  316,  446,  682  PubMed: 33779952 DOI: 10.1007/s12275-021-1086-8 Jester, B. W. et al. 2022 Development of spirulina for the manufacture and oral delivery of protein therapeutics. Nat. Biotechnol., 40, 956–964. Strain(s): 39  PubMed: 35314813 DOI: 10.1038/s41587-022-01249-7 Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID). Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation Strain(s): 3808  PubMed: 31200330 DOI: 10.1016/j.aquatox.2019.05.017 Jiang, M. & Nakano, S. 2021 Application of image analysis for algal biomass quantification: a low‑cost and non‑destructive method based on HSI color space. J. Appl. Phycol., 33, 3709–3717. Keywords: Algal biomass; Quantitative methods; Image analysis; HSI color space; Lambert–Beer law Strain(s): 333,  2172  DOI: 10.1007/s10811-021-02571-4 Jiang, M. & Nakano, S. 2022 The crucial influence of trophic status on the relative requirement of nitrogen to phosphorus for phytoplankton growth. Water Res., 222, 118868 (article ID). Keywords: Nitrogen; Phosphorus; Trophic status; Phytoplankton; Nitrogen-to-phosphorus ratio; Limiting factor Strain(s): 44,  2093,  2172  PubMed: 35870387 DOI: 10.1016/j.watres.2022.118868 Jiang, R., Qin, L., Feng, S., Huang, D., Wang, Z., Zhu, S. 2021 The joint effect of ammonium and pH on the growth of Chlorella vulgaris and ammonium removal in artificial liquid digestate. Bioresour. Technol., 325, 124690 (article ID). Keywords: Chlorella vulgaris; Ammonium; pH; Free ammonia; Cell components; Extracellular organic matters Strain(s): 227  DOI: 1016/j.biortech.2021.124690 Jiang, X., Zhang, Y., Hutchins, D. A., Gao, K. 2022 Nitrogen-limitation exacerbates the impact of ultraviolet radiation on the coccolithophore Gephyrocapsa oceanica. J. Photochem. Photobiol. B-Biol., 226, 112368 (article ID). 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Keywords: Combined pollution; Ultraviolet irradiation; Cyanobacterial control; Microcystins; Proteomic resp Strain(s): 843  PubMed: 32088440 DOI: 10.1016/j.envpol.2020.114193 Jin, J., Zhang, X., Kusui, T. 2018 Preliminary toxicity Assessment of combined Sewer overflows in Toyama, Japan. J. Water Environ. Technol., 16, 185-198. Keywords: combined sewer overflows (CSOs); toxicity identification evaluation (TIE); toxicity test; heavy metals; aquatic organisms Strain(s): 35  DOI: 10.2965/jwet.17-041 Jin, P., Gao, K. 2016 Reduced resilience of a globally distributed coccolithophore to ocean acidification: Confirmed up to 2000 generations. Mar. Pollut. Bull., 103, 101-108. Keywords: Ocean acidification; Coccolithophore; Evolution; Phenotypic plasticity; Fitness Strain(s): 1318  PubMed: 26746379 DOI: 10.1016/j.marpolbul.2015.12.039 Jin, P., Gao, K., Beardall, J. 2013 Evolutionary responses of a coccolithophorid Gephyrocapsa oceanica to ocean acidification. Evolution, 67, 1869-1878. Keywords: CCM; CO2; coccolithophore; Gephyrocapsa; pH; selection Strain(s): 1318  PubMed: 23815645 DOI: 10.1111/evo.12112 Jin, P., Gao, K., Villafañe, V. E., Campbell, D. A., Helbling, E. W. 2013 Ocean acidification alters the photosynthetic responses of a coccolithophorid to fluctuating ultraviolet and visible radiation. Plant Physiol., 162, 2084-2094. Strain(s): 1318  PubMed: 23749851 DOI: 10.1104pp.113.219543 Jin, P., Liu, N., Gao, K. 2019 Physiological responses of a coccolithophore to multiple environmental drivers. Mar. Pollut. Bull., 146, 225-235. Keywords: Coccolithophores; Global change; Ocean acidification; Multiple drivers; Synergistical Strain(s): 1318  PubMed: 31426151 DOI: 10.1016/j.marpolbul.2019.06.032 Jo, B.-H., Lee, C. S., Song, H.-R., Lee, H.-G., Oh, H.-M. 2014 Development of novel microsatellite markers for strain-specific identification of Chlorella vulgaris. J. Microbiol. 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D., Gretz, M. R. 1995 Effects of bromide and iodine on stalk secretion in the biofouling diatom Achnanthes longipes (Bacillariophyceae). J. Phycol., 31, 401-412. Keywords: Achnanthes longipes; Bacillariophyceae; biofouling; bromide; diatom; EPS secretion; image analysis; inhibition of adhesion; iodine; Lotus-FITC; stalks Strain(s): 330  DOI: 10.1111/j.0022-3646.1995.00401.x Jones, M. R., Pinto, E., Torres, M. A., Dörr, F., Mazur-Marzec, H., Szubert, K., Tartaglione, L., Dell'Aversano, C., Miles, C. O., Beach, D. G., McCarron, P., Sivonen, K., Fewer, D. P., Jokela, J., Janssen, E. M.-L. 2021 CyanoMetDB, a comprehensive public database of secondary metabolites from cyanobacteria. Water Res., 196, 117017 (article ID). Strain(s): 90  PubMed: 33765498 DOI: 10.1016/j.watres.2021.117017 Jong, L. W., Fujiwara, T., Hirooka, S., Miyagishima, S. 2021 Cell size for commitment to cell division and number of successive cell divisions in cyanidialean red algae. Protoplasma, 258, 1103–1118. Keywords: Cell cycle; Cyanidiales; Cyanidioschyzon; Cyanidium; Galdieria; Multiple fission Strain(s): 2137,  3377  PubMed: 33675395 DOI: 10.1007/s00709-021-01628-y Joo, J. C., Ahn, C. H., Lee, S., Jang, D-G., Lee, W. H., Ryu, B. R. 2016 Algal growth potential of Microcystis aeruginosa from reclaimed water. Water Environ. Res., 88, 54-62. Keywords: algal growth potential (AGP); Microcystis aeruginosa; reclaimed water; recreational water reuse; soluble reactive phosphorus; wastewater reclamation plant Strain(s): 298  PubMed: 26803027 DOI: 10.2175/106143015X14365865227797 Jouenne, F., Eikrem, W., Le Gall, F., Johnsen, G., Vaulot, D. 2011 Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a solitary coccoid prasinophyte from the South-East Pacific Ocean. Protist, 162, 70-84. Keywords: binary fission; field emission scanning electron microscopy (FE-SEM); picoplankton; Prasinoderma; Prasinophyceae; taxonomy Strain(s): 2582  PubMed: 20674490 DOI: 10.1016/j.protis.2010.04.005 Joun, J., Sirohi, R., Sim, S. J. 2023 The effects of acetate and glucose on carbon fixation and carbon utilization in mixotrophy of Haematococcus pluvialis. Bioresour. Technol., 367, 128218 (article ID). Keywords: Haematococcus pluvialis; Mixotrophy; Sodium acetate; Glucose; Mixotrophic metabolism Strain(s): 144  PubMed: 36332870 DOI: 10.1016/j.biortech.2022.128218 Ju, C., Van de Poel, B., Cooper,E.D., Thierer, J., Gibbons, T., Delwiche, C.F., Chang, C. 2015 Conservation of ethylene as a plant hormone over 450 million years of evolution. Nature Plants, 1, 14004 (article ID). Strain(s): 995  PubMed: 27246051 DOI: 10.1038/nplants.2014.4 Jung, J, Baek, J. H., Lee, Y., Jeong, S. E., Jeon, C. O. 2022 The self-Bleaching process of Microcystis aeruginosa is delayed by a symbiotic bacterium Pseudomonas sp. MAE1-K and promoted by methionine deficiency. Microbiol. Spectr., 10, e0181422 (article ID). Keywords: Microcystis aeruginosa; bleaching; methionine deficiency; Pseudomonas; metZ mutant; bleaching compounds Strain(s): 298  PubMed: 35771009 DOI: 10.1128/spectrum.01814-22 Jung, J., Seo, Y. L., Jeong, S. E., Baek, J. H., Park, H. Y., Jeon, C. O. 2022 Linear six-carbon sugar alcohols induce lysis of Microcystis aeruginosa NIES-298 cells. Front. Microbiol., 13, 834370 (article ID). Strain(s): 298  PubMed: 35495711 DOI: 10.3389/fmicb.2022.834370 Jung, J.-M., Lee, Y.-J., Park, H.-K., Jung, E.-Y., Joo, G.-J. 2003 The analysis of cyanobacterial neurotoxins by high-performance liquid chromatography-mass spectrometry. Algae, 18, 233-238. Keywords: anatoxin-a; Aphanizomenon flos-aquae; cyanobacterial toxins; LC-MS; saxitoxin Strain(s): 81  DOI: 10.4490/ALGAE.2003.18.3.23 Jung, P., D'Agostino, P. M., Brust, K., Büdel, B., Lakatos, M. 2021 Final destination? Pinpointing Hyella disjuncta sp. nov. PCC 6712 (Cyanobacteria) based on taxonomic aspects, multicellularity, nitrogen fixation and biosynthetic gene clusters. Life-Basel, 11, 916 (article ID). Strain(s): 592,  3754  PubMed: 34575065 DOI: 10.3390/life11090916 Jung, S. W., Kim, B.-H., Katano, T., Kong, D.-S., Han, M.-S. 2008 Pseudomonas flurescens HYK0210-SK09 offers species-specific biological control of winter algal blooms caused by freshwater diatom Stephanodiscus hantzschii. J. Appl. Microbiol., 105, 186-195. Keywords: algicidal bacterium; algicidal mechanism; biological control; indoor mesocosm; Pseudomonas fluorescens; Stephanodiscus hantzschii Strain(s): 19,  44,  298  PubMed: 18266701 DOI: 10.1111/j.1365-2672.2008.03733.x Jung, S.-H., McHardy, C., Rauh, C., Jahn, A., Luzi, G., Delgado, A., Buchholz, R., Lindenberger, C. 2021 A new approach for calculating microalgae culture growth based on an inhibitory efect of the surrounding biomass. Bioprocess. Biosyst. Eng., 44, 1671-1684. Keywords: Algae cultivation; Numerical methods; Growth kinetics; Inhibitory efects Strain(s): 39  PubMed: 33860849 DOI: 10.1007/s00449-021-02550-6 Kabata, K., Sadakane, H., Kurose, M., Kobayakawa, A., Watanabe, T., Hatano, S. 1980 Changes in fatty acid composition of membrane fractions during hardening of Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 25, 91-97. Strain(s): 2170  Kabata, K., Sadakane, H., Miyachi, S., Nagata, K., Hatano, S., Watanabe, T. 1979 Studies on lipid changes during the development of frost hardiness in Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 23, 155-161. Strain(s): 2170  Kaeriyama, H., Katsuki, E., Otsubo, M., Yamada, K., Ichimi, K., Tada, K., Harrison, P. J. 2011 Effects of temperature and irradiance on growth of strains belonging to seven Skeletonema species isolated from Dokai Bay, southern Japan. Eur. J. Phycol., 46, 113-124. Keywords: Dokai Bay; irradiance; physiology; Skeletonema species; specific growth rate; temperature Strain(s): 2837,  2838,  2839,  2841,  2842,  2843,  2844  DOI: 10.1080/09670262.2011.565128 Kaewpintong, K., Shotipruk, A., Powtongsook, S., Pavasant, P. 2007 Photoautotrophic high-density cultivation of vegetative cells of Haematococcus pluvialis in airlift bioreactor. Bioresour. Technol., 98, 288-295. Keywords: Airlift bioreactors; Astaxanthin; Autotrophic; Bioprocess design; Bubble columns; Microalgae Strain(s): 144  PubMed: 16516464 DOI: 10.1016/j.biortech.2006.01.011 Kai, A., Yoshii, Y., Nakayama, T., Inouye, I. 2008 Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159, 435-457. Keywords: flagellar apparatus; Phaeophyceae; Phaeothamniophyceae; pigment composition; Xanthophyceae; phylogeny Strain(s): 1862,  1863,  1864,  1865  PubMed: 18358776 DOI: 10.1016/j.protis.2007.12.003 Kajikawa, M., Yamato, K. T., Kohzu, Y., Shoji, S., Sakai, Y., Fukuzawa, H. 2006 A front-end desaturase from the green alga Chlamydomonas reinhardtii produces pinolenic and coniferonic acids by ω13 desaturation in methylotrophic yeast and tobacco. Plant Cell Physiol., 47, 64-73. Keywords: Chlamydomonas reinhardtii; Δ5-unsaturated bis-methylene-interrupted fatty acids; fatty acid desaturase; Pichia pastoris; tobacco plant Strain(s): 2235  PubMed: 16267098 DOI: 10.1093/pcp/pci224 Kajiwara, S., Kakizono, T., Saito, T., Kondo, K., Ohtani, T., Nishio, N., Nagai, S., Misawa, N. 1995 Isolation and functional identification of a novel cDNA for astaxanthin biosynthesis from Haematococcus pluvialis, and astaxanthin synthesis in Escherichia coli. Plant Mol. Biol., 29, 343-352. Keywords: astaxanthin; canthaxanthin; carotenoid; xanthophyll; Haematococcus pluvialis; green alga Strain(s): 144  PubMed: 7579184 DOI: 10.1007/BF00043657 Kakimoto, M., Ishikawa, T., Miyagi, A., Saito, K., Miyazaki, M., Asaeda, T., Yamaguchi, M., Uchiyama, H., Kawai-Yamada, M. 2014 Culture temperature affects gene expression and metabolic pathways in the 2-methylisoborneol-producing cyanobacterium Pseudanabaena galeata. J. Plant Res., 171, 292-300. Keywords: 2-MIB; Cyanobacteria; Gene expression; Metabolomics; Temperature-induction Strain(s): 512  PubMed: 24140001 DOI: 10.1016/j.jplph.2013.09.005 Kakizono, T., Kobayashi, M., Nagai, S. 1992 Effect of carbon/nitrogen ratio on encystment accompanied with astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 403-405. Strain(s): 144  DOI: 10.1016/0922-338X(92)90041-R Kakuta, S., Suzaki, T. 2007 Ca2+- and glycoconjugates-dependent prey capture in the heliozoan Actinophrys sol. Eur. J. Protistol., 44, 163-167. Keywords: calium ion influx; Con A; exocytosis; extrusome; glycoprotein; secretory granule Strain(s): 2497  PubMed: 18178392 DOI: 10.1016/j.ejop.2007.11.001 Kamata, K., Piao, Z., Suzuki, S., Fujimori, T., Tajiri, W., Nagai, K., Iyoda, T., Yamada, A., Hayakawa, T., Ishiwara, M., Horaguchi, S., Belay, A., Tanaka, T., Takano, K., Hangyo M. 2014 Spirulina-templated metal microcoils with controlled helical structures for THz electromagnetic responses. Sci Rep, 4, 4919 (article ID). Strain(s): 39,  46  PubMed: 24815190 DOI: 10.1038/srep04919 Kamaya,Y., Tsuboi, S., Takada, T., Suzuki, K. 2006 Growth stimulation and inhibition effects of 4-hydroxybenzoic acid and some related compounds on the freshwater green alga Pseudokirchneriella subcapitata. Arch. Environ. Contam. Toxicol., 51, 537-541. Strain(s): 35  PubMed: 16998630 DOI: 10.1007/s00244-005-0320-4 Kamei-Ishikawa, N., Maeda, T., Soma, M., Yoshida, N., Sameshima, Y., Sasamoto, M., Higashiyama, Y., Touno, E., Ito, A. 2020 Tylosin degradation during manure composting and the effect of the degradation byproducts on the growth of green algae. Sci. Total Environ., 718, 137295 (article ID). Keywords: Sheep feces; Half-life; Thermal degradation; Elution from artificial rainwater; Acute toxicity test; Raphidocelis subcapitata Strain(s): 35  PubMed: 32087586 DOI: 10.1016/j.scitotenv.2020.137295 Kameyama, K., Sugiura, N., Isoda, H., Inamori, Y., Maekawa, T. 2002 Effect of nitrate and phosphate concentration on production of microcystins by Microcystis viridis NIES 102. Aquat. Ecosyst. Health Manag., 5, 443–449. Keywords: growth phase Strain(s): 102  DOI: 10.1080/14634980290001995 Kamikawa, R. et al. 2022 Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Sci. Adv., 8, eabi5075 (article ID). Strain(s): 4239  PubMed: 35486731 DOI: 10.1126/sciadv.abi5075 Kamikawa, R., Asai, J., Miyahara, T., Murata, K., Oyama, K., Yoshimatsu, S., Yoshida, T., Sako, Y. 2006 Application of a real-time PCR assay to a comprehensive method of monitoring harmful algae. Mircobes Environ., 21, 163-173. Keywords: harmful algal bloom (HAB); molecular monitoring; real-time PCR; red tide Strain(s): 7,  121,  603  DOI: 10.1264/jsme2.21.163 Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361. Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1 Strain(s): 2729,  3576,  3581  PubMed: 29803116 DOI: 10.1016/j.protis.2018.04.009 Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID). Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas Strain(s): 417,  534,  1349,  1371,  1373,  1374  PubMed: 23800323 DOI: 10.1186/1471-2148-13-131 Kamikawa, R., Masuda, I., Demura, M., Oyama, K., Yoshimatsu, S., Kawachi, M., Sako, Y. 2009 Mitochondrial group II introns in the Raphidophycean flagellate Chattonella spp. suggest a diatom-to-Chattonella lateral group II intron transfer. Protist, 160, 364-375. Keywords: Chattonella; cytochrome c oxidase subunit 1 (cox1); diatoms; group II intron; lateral transfer; Raphidophyceae Strain(s): 1,  2,  3,  14,  85,  86,  115,  118,  121,  161,  462,  557,  558,  603,  671,  716,  849,  1303,  1975,  1976,  2391,  2401,  2402,  2403,  2404,  3422,  3429  PubMed: 19346162 DOI: 10.1016/j.protis.2009.02.003 Kamikawa, R., Masuda, I., Oyama, K., Yoshimatsu, S., Sako, Y. 2007 Genetic variation in mitochondrial genes and intergenic spacer region in harmful algae Chattonella species. Fish. Sci., 73, 871-880. Keywords: Chattonella sp.; cytochrome c oxidase subunit 1 (cox1); cytochrome c oxidase subunit 2 (cox2); genetic diversity; harmful algae; mitochondria Strain(s): 1,  2,  3,  14,  85,  86,  115,  118,  121,  161,  557,  558,  603,  671,  849,  3422,  3428,  3429  DOI: 10.1111/j.1444-2906.2007.01408.x Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570. Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads Strain(s): 17,  350,  417,  534,  586,  1045,  1349  PubMed: 19577655 DOI: 10.1016/j.ympev.2009.06.016 Kamikawa, R., Shiratori, T., Ishida, K-I., Miyashita, H., Roger, A. J. 2016 Group II intron-mediated trans-splicing in the green-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans. Genome Biol. Evol., 8, 458-466. Keywords: Diphyllatia; introns; mitochondria; inverted repeats; trans-splicing Strain(s): 3764  PubMed: 26833505 DOI: 10.1093/gbe/evw011 Kamikawa, R., Tanifuji, G., Kawachi, M., Miyashita, H., Hashimoto, T., Inagaki, Y. 2015 Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum. Genome Biol. Evol, 7, 1133–1140. Keywords: genome reduction; Lepidodinium; Pedinophyceae; secondary plastids; plastid replacement Strain(s): 1868  PubMed: 25840416 DOI: 10.1093/gbe/evv060 Kamikawa, R., Tanifuji, Ishikawa, G. S., Ishii, K., Matsuno, Y., Onodera, N. T., Ishida, K-I., Hashimoto, T., Miyashita, H., Mayama, S., Inagaki, Y. 2015 Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes. Mol. Biol. Evol., 32, 2598-2604. Keywords: apochlorotic diatoms; nonphotosynthetic plastid genome; genome reduction; ATP synthase complex; Twin-arginine translocator Strain(s): 3581  PubMed: 26048548 DOI: 10.1093/molbev/msv134 Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y. 2015 Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae). Phycol. Res., 63, 19-28. Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA Strain(s): 3576,  3577,  3578,  3579,  3580,  3581  DOI: 10.1111/pre.12072 Kamiya, A. 1988 Blue light-induced in vivo absorbance changes and in vitro activation of nitrate reductase in a nitrate-starved Chlorella mutant. Plant Cell Physiol., 29, 489-496. Keywords: blue light effect; Chlorella; light-induced absorbancechange; NADH-nitrate reductase Strain(s): 2162  DOI: 10.1093/oxfordjournals.pcp.a077519 Kamiya, A. 1989 Effects of blue light and ammonia on nitrogen metabolism in a colorless mutant of Chlorella. Plant Cell Physiol., 30, 513-521. Keywords: ammonia effect; blue light effect; Chlorella; glutamine synthetase; nitrate uptake; nitrogen metabolism Strain(s): 2162  DOI: 10.1093/oxfordjournals.pcp.a077770 Kamiya, A. & Miyachi, S. 1974 Effects of blue light on respiration and carbon dioxyde fixation in colorless Chlorella mutant cells. Plant Cell Physiol., 15, 927-937. Strain(s): 2162  DOI: 10.1093/oxfordjournals.pcp.a075082 Kamiya, A. & Miyachi, S. 1975 Blue light-induced formation of photphoenolpyruvate carboxylase in colorless Chlorella mutant cells. Plant Cell Physiol., 16, 729-736. Strain(s): 2162  Kamo, T., Shimogawara, K., Fukuzawa, H., Muto, S., Miyachi, S. 1990 Subunit constitution of carbonic anhydrase from Chlamydomonas reinhardtii. Eur. J. Biochem., 192, 557-562. Strain(s): 2235  PubMed: 2120056 DOI: 10.1111/j.1432-1033.1990.tb19261.x Kanai, R., Aoki, S., Miyachi, S. 1965 Quantitative separation of inorganic polyphosphates in Chlorella cells. Plant Cell Physiol., 6, 467-473. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a079116 Kanai, R., Miyachi, S., Miyachi, S. 1963 Light-induced formation and mobilization of polyphosphate "C" in Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 613-618. Strain(s): 2170  Kanazawa, T. 1958 Synchronous culture of Chlorella with special reference of the processes of assimilation of potassium magnesium and iron. J. Gen. Appl. Microbiol., 4, 102-107. Strain(s): 2170  DOI: 10.2323/jgam.4.102 Kanazawa, T., Fujita, C., Yuhara, T., Sasa, T. 1958 Mass culture of unicellular algae using "open circulation method". J. Gen. Appl. Microbiol., 4, 135-152. Strain(s): 2170  DOI: 10.2323/jgam.4.135 Kanazawa, T., Yanagisawa, T., Tamiya, H. 1966 Aliphatic amines occurring in Chlorella cells and changs of their contents during the life cycle of the alga. Z. Botanik, Festschr. f. E. Bünning, 54, 57-62. Strain(s): 2170  Kanda, H., Li, P., Ikehara, T., Yasumoto-Hirose, M. 2012 Lipids extracted from several species of natural blue–green microalgae by dimethyl ether: Extraction yield and properties. Fuel, 95, 88-92. Keywords: Lipids; Microalgae; Extraction; Dimethyl ether Strain(s): 595,  1263  DOI: 10.1016/j.fuel.2011.11.064 Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H. 2017 CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex. Sci Rep, 7, 17873 (article ID). Strain(s): 67,  68  PubMed: 29259295 DOI: 10.1038/s41598-017-18251-8 Kaneko, H. & Yamaguchi, M. 1995 Toxicity evaluation of municipal solid waste incinerator fly ash by algal assay. Reports Facul. Eng. Yamanashi Univ., 46, 84-89 (in Japanese with English summary). Strain(s): 35  Kaneko, H., Shimada, A. Hirayama, K. 2004 Short-term algal toxicity test based on phosphate uptake. Water Res., 38, 2173-2177. Keywords: Selenastrum capricornutum; Phosphate uptake; Short-term toxicity test Strain(s): 35  PubMed: 15087199 DOI: 10.1016/j.watres.2004.02.006 Kaneko, H., Yamaguchi, M., Ikeda, F. 1996 Toxicity of municipal solid waste incinerator fly ash and the contribution of Cadmium. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 19, 563-568 (in Japanese with English summary). Keywords: MWI fly ash; leachate; algal assay; Daphnia test; hazardous waste Strain(s): 35  Kaneko, T., Nakajima, N., Okamoto, S., Suzuki, I., Tanabe, Y., Tamaoki, M., Nakamura, Y., Kasai, F., Watanabe, A., Kawashima, K., Kishida, Y., Ono, A., Shimizu, Y., Takahashi, C., Minami, C., Fujishiro, T., Kohara, M., Katoh, M., Nakazaki, N., Nakayama, S., Yamada, M., Tabata, S., Watanabe, M. M. 2007 Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res., 14, 247-256. Strain(s): 843  PubMed: 18192279 DOI: 10.1093/dnares/dsm026 Kanesaki, Y., Imamura, S., Minoda, A., Tanaka, K. 2012 External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae. DNA Res., 19, 289-303. Keywords: cell cycle; clustering analysis; Cyanidioschyzon; organelle; transcriptome Strain(s): 3377  PubMed: 22518007 DOI: 10.1093/dnares/dss013 Kang, B.-H., Tan, S., Ho, K.-K. 1988 Isolation of water-soluble cytochromes from cyanobacteria by adsorption chromatography. Archi. Biochem. Biophys., 263, 387-393. Strain(s): 44  PubMed: 3132107 DOI: 10.1016/0003-9861(88)90650-9 Kang, C. B. H. & Ho. K.-K. 1991 Characteri-zation of a soluble inorganic pyrophosphatase from Microcystis aeruginosa. Archi. Biochem. Biophys., 289, 281-288. Strain(s): 44  PubMed: 1654852 DOI: 10.1016/0003-9861(91)90473-V Kang, C. D., Lee, J. S., Park, T. H., Sim, S. J. 2005 Comparison of heterotrophic and photoautotrophic induction on astaxanthin production by Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 68, 237-241. Strain(s): 144  PubMed: 15711942 DOI: 10.1007/s00253-005-1889-2 Kang, C.-D., Sim, S.-J. 2008 Direct extraction of astaxanthin from Haematococcus culture using vegetable oils. Biotechnol. Lett., 30, 441–444. Keywords: Astaxanthin; Direct extraction; Green process; Haematococcus pluvialis; Vegetable oil Strain(s): 144  PubMed: 17972016 DOI: 10.1007/s10529-007-9578-0 Kang, Y.-H., Park, C.-S., Han, M.-S. 2012 Pseudomonas aeruginosa UCBPP-PA14 a useful bacterium capable of lysing Microcystis aeruginosa cells and degrading microcystins. J. Appl. Phycol., 24, 1517-1525. Keywords: Microcystis aeruginosa; Microcystins; Algicidal bacteria; Pseudomonas aeruginosa Strain(s): 44,  94,  298  DOI: 10.1007/s10811-012-9812-6 Kang, Y-H., Kang, S-K., Park, C-S., Joo, J-H., Lee, J-W., Han, M-S. 2016 Use of lactic acid bacteria as a biological agent against the cyanobacterium Anabaena flos-aquae. J. Appl. Phycol., 28, 1747-1757. Keywords: Lactic acidbacteria; Cyanobacteriacidalbacteria; Anabaena flos-aquae; Biological control Strain(s): 75,  94,  298  DOI: 10.1007/s10811-015-0701-7 Kania, K., Zienkiewicz, M., Drożak, A. 2020 Stable transformation of unicellular green alga Coccomyxa subellipsoidea C-169 via electroporation. Protoplasma, 257, 607–611. Keywords: Coccomyxa subellipsoidea C-169; Hygromycin B resistance; Electrotransformation; Electroporation; Stable genome transformation Strain(s): 2166  PubMed: 31741062 DOI: 10.1007/s00709-019-01447-2 Karan, T., Erenler, R., Altuner, Z. 2017 Isolation and molecular identification of some blue-green algae (cyanobacteria) from freshwater sites in Tokat province of Turkey. Turkish JAF Sci.Tech., 5 Keywords: Algae; 16S rRNA; Cyanobacteria; Molecular identification; Phycocyanine Strain(s): 816  DOI: 10.24925/turjaf.v5i11.1371-1378.1470 Kareya, M. S., Mariam, I., Shaikh, K. M., Nesamma, A. A., Jutur, P. P. 2020 Photosynthetic carbon partitioning and metabolic regulation in response to very-low and high CO2 in Microchloropsis gaditana NIES 2587. Front. Plant Sci., 11, 981 (article ID). Keywords: Microchloropsis; biomass; carbon dioxide; oleaginous microalga; photosynthetic cell factories Strain(s): 2587  PubMed: 32719702 DOI: 10.3389/fpls.2020.00981 Kang, S., Kim, K.-H., Chung, N., Li, Z. 2023 A new omega-3 rich euglenoid Eutreptiella sp. from the Korean coastal waters. Algal Res., 75, 103296 (article ID). Keywords: Euglenoids; Eutreptiella sp. KCTC 19016P; Fatty acids; Microalgae; Phytoplankton; Phylogenetic analysis Strain(s): 47,  381,  2305  DOI: 10.1016/j.algal.2023.103296 Karlsson, K. 2005 Liquid chromatotraphy - mass spectrometry in distribution and bioaccumulation studies of toxic cyanopeptides. PhD thesis, Åbo Akademi University, Turku, Finland, 62 pp. Strain(s): 107  Karpf, S., Riche, C. T., Di Carlo, D., Goel, A., Zeiger, W. A., Suresh, A., Portera-Cailliau, C., Jalali, B. 2020 Spectro-temporal encoded multiphoton microscopy and fluorescence lifetime imaging at kilohertz frame-rates. Nat. Commun., 11, 2062 (article ID). Strain(s): 48  PubMed: 32346060 DOI: 10.1038/s41467-020-15618-w Kasai, F. & Arts, M. T. 1998 The interactive effects of UV-B radiation and a herbicide on uptake and allocation of carbon in two strains of the green alga Scenedesmus. Aquat. Ecol., 31, 261-272. Keywords: herbicide tolerance; photosynthesis; phytoplankton; simetryn; triazine herbicides; ultraviolet radiation Strain(s): 802  DOI: 10.1007/BF02493513 Kasai, F. & Hanazato, T. 1995 Genetic changes in phytoplankton communities exposed to the herbicide simetryn in outdoor experimental ponds. Arch. Environ. Contam. Toxicol., 28, 154-160. Strain(s): 797,  798,  799,  800,  801,  802  DOI: 10.1007/BF00217610 Kasai, F. & Hatakeyama, S. 1993 Herbicide susceptibility in two green algae, Chlorella vulgaris and Selenastrum capricornutum. Chemosphere, 27, 899-904. Strain(s): 35,  227  DOI: 10.1016/0045-6535(93)90019-2 Kasai, F. & Hatakeyama, S. 1996 Changes in herbicide susceptibility of algae in a river running through an agricultural region. Ecol. Chem. (St.Petersburg), 5, 292-296. Keywords: algal community; herbicide; simetryn; pretilachlor; pollution; effects Strain(s): 803,  804,  805  Kasai, F. & Ichimura, T. 1986 Morphological variabilities of three closely related mating groups of Closterium ehrenbergii Meneghini (Chlorophyta). J. Phycol., 22, 158-168. Keywords: cell shape and size; clonal culture; Closterium ehrenbergii; mating group; morphological variability; statistical analysis Strain(s): 171,  228,  229  DOI: 10.1111/j.1529-8817.1986.tb04159.x Kasai, F. & Ichimura, T. 1990 Temperature optima of three closely related mating groups of the Closterium ehrenbergii (Chlorophyta) species complex. Phycologia, 29, 396-402. Strain(s): 228,  229  DOI: 10.2216/i0031-8884-29-4-396.1 Kasai, F., Takamura, N., Hatakeyama, S. 1993 Effects of simetryne on growth of various freshwater algal taxa. Environ. Pollut., 79, 77-83. Strain(s): 35,  44,  73,  77,  102,  137,  151,  230,  231,  255,  275,  280,  298  DOI: 10.1016/0269-7491(93)90180-V Kashem, MA., Kimoto, K., Iribe, Y., Suzuki, M. 2019 Development of microalgae biosensor chip by incorporating microarray oxygen sensor for pesticides sensing. Biosensors, 9, 133 (article ID). Keywords: biosensor chip; fluorescence oxygen sensor; microalgae; pesticides Strain(s): 35  PubMed: 31726653 DOI: 10.3390/bios9040133 Kashino, Y., Enami, I., Satoh, K., Katoh, S. 1990 Immunological cross-reactivity among corresponding proteins of photosystems I and II from widely divergent photosynthetic organisms. Plant Cell Physiol., 31, 479-488. Keywords: antiserum; cross-reactivity; immunoblotting; photosystem; protein Strain(s): 2093,  2138,  2235  DOI: 10.1093/oxfordjournals.pcp.a077935 Kashiyama Y., Yokoyama A., Kinoshita Y., Shoji S., Miyashiya H., Shiratori T., Suga H., Ishikawa K., Ishikawa A., Inouye I., Ishida K., Fujinuma D., Aoki K., Kobayashi M., Nomoto S., Mizoguchi T., Tamiaki H. 2012 Ubiquity and quantitative significance of detoxification catabolism of chlorophyll associated with protistan herbivory. Proc. Nati. Acad. Sci. U. S. A., 109, 17328-17335. Keywords: phototoxicity of chlorophylls; microbial herbivory; phagocytosis; biodiversity of eukaryotes; microbial loop Strain(s): 281  PubMed: 22949677 DOI: 10.1073/pnas.1207347109 Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910. Strain(s): 8,  254,  274,  286,  324,  331,  353,  381,  494,  623,  624,  997,  1012,  1013,  1015,  1320,  1330,  1333,  1334,  1335,  1372,  1377,  1388,  1390,  1396,  1397,  1408,  1438,  1439,  1441,  1868,  1964,  2008,  2142,  2144,  2149,  2300,  2305,  2325,  2433,  2498,  2502,  2566,  2584,  2586,  2589,  2590,  2677,  2878,  3356,  3374,  3775,  3876  PubMed: 30809012 DOI: 10.1038/s41396-019-0377-0 Kataoka, H. 2019 Quantitative analysis of tip growth, phototropic responses, and other blue light-dependent photoresponses of Vaucheria. In Phototropism, Part of the Methods in Molecular Biology book series, Ed. by Yamamoto, K. T., Humana Press, New York, NY, 1924, pp. 83-120. Keywords: Apical expansion; Aureochrome; Blue light; Branching; Ca2+ ion; Coenocyte; Lightgrowth response; Negative phototropism; Polarotropism; Positive phototropism; Split-field illumination method; Unilateral illumination method; Vaucheria Strain(s): 2614,  2615  PubMed: 30694469 DOI: 10.1007/978-1-4939-9015-3_8 Kataoka, T., Homma, T., Nakano, S., Hodoki, Y., Ohbayashi, K., Kondo, R. 2013 PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis. Harmful Algae, 23, 46-54. Keywords: Microcystis aeruginosa; Quantitative PCR; 16S-23S rDNA ITS fegion; Selective detection; Intra-species variation Strain(s): 44,  87,  90,  98,  101,  102,  103,  107,  111,  112,  298,  604,  1062,  1070  DOI: 10.1016/j.hal.2012.12.003 Katayama, N. & MOsanai, T. 2022 Arginine inhibition of the argininosuccinate lyases is conserved among three orders in cyanobacteria. Plant Mol.Biol., 110, 13–22. Keywords: Arginine biosynthesis; Argininosuccinate lyase; Cyanobacteria; Synechocystis Strain(s): 39  PubMed: 35583703 DOI: 10.1007/s11103-022-01280-x Kato, A. & Sasaki, K. 1983 Effects of tunica-mycin on sexual reproduction in heterothallic strains of Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 1-6. Strain(s): 64,  65  Kato, A., Morita, N., Hiratsuka, T., Suda, S. 2009 Recent introduction of a freshwater red alga Chantransia macrospora (Batrachospermales, Rhodophyta) to Okinawa, Japan. Aquat. Invasions, 4, 567-574. Keywords: Audouinella; Batrachospermum; Chantransia macrospora; freshwater algae; introduced species; macroalgae Strain(s): 2636  DOI: 10.3391/ai.2009.4.4.1 Kato, A., Obokata, J., Sasaki, K. 1981 Mating type interaction in Closterium peracerosum-strigosum-littorale: mating induced protoplast release. Plant Cell Physiol., 22, 1215-1222. Keywords: Closterium peracerosum-strigosum-littorale; conjugation; disruped cell; mating type interaction; protoplast release Strain(s): 64,  65  DOI: 10.1093/oxfordjournals.pcp.a076273 Kato, A., Ohmura, K., Kanazawa, H., Sasaki, K. 1983 Natural and artificial production of protoplasts from heterothallic and homothallic Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 7-15. Strain(s): 64,  65  Kato, K., Hamaguchi, T., Nagao, R., Kawakami, K., Ueno, Y., Suzuki, T., Uchida, H., Murakami, A., Nakajima, Y., Yokono, M., Akimoto, S., Dohmae, N., Yonekura, K., Shen, J.-R. 2022 Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus. eLife, 11, e73990 (article ID). Strain(s): 2134  PubMed: 35404232 DOI: 10.7554/eLife.73990 Kato, K., Nagao, R., Ueno, Y., Yokono, M., Suzuki, T., Jiang, T.-Y., Dohmae, N., Akita, F., Akimoto, S., Miyazaki, N., Shen, J.-R. 2022 Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa. Nat. Commun., 13, 1679 (article ID). Strain(s): 547  PubMed: 35354806 DOI: 10.1038/s41467-022-29303-7 Kato, S. & Nam, H. G. 2021 The cell division cycle of Euglena gracilis indicates that the level of circadian plasticity to the external light regime changes in prolonged-stationary cultures. Plants-Basel, 10, 1475 (article ID). Keywords: aging; cell division; circadian plasticity; Euglena gracilis; microalgae; T-cycle Strain(s): 48  PubMed: 34371678 DOI: 10.3390/plants10071475 Kato, S., Higuchi, S., Kondo, Y., Kitano, S., Nozaki, H., Tanaka, J. 2005 Rediscovery of the wild-extinct species Nitellopsis obtusa (Charales) in Lake Kawaguchi, Japan. J. Jpn. Bot., 80, 84-91. Keywords: Charales; Nitellopsis; rbcL gene; rediscovery; wild-extinct species Strain(s): 1638  Kato, S., Misumi, O., Maruyama, S., Nozaki, H., Tsujimoto-Inui, Y., Takusagawa, M., Suzuki, S., Kuwata, Noda, S., Ito, N., Okabe, Y., Sakamoto, Yagisawa, Y., Matsunaga, M. T., Matsubayashi, Y., Yamaguchi, H., Kawachi, M., Kuroiwa, H., Kuroiwa, T., Matsunaga, S. 2023 Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun. Biol., 6, 89 (article ID). Strain(s): 4000  PubMed: 36690657 DOI: 10.1038/s42003-022-04367-9 Kato, S., Sakayama, H., Sano, S., Kasai, F., Watanabe, M. M., Tanaka, J., Nozaki, H. 2008 Morphological variation and intraspecific phylogeny of the ubiquitous species Chara braunii (Charales, Charophyceae) in Japan. Phycologia, 47, 191-202. Keywords: aquatic habitat; Chara braunii; Charales; Charophyceae; intergenic spacer region; intraspecific phylogeny; morphological variation, rbcL gene Strain(s): 1586,  1587,  1588,  1589,  1590,  1591,  1604  DOI: 10.2216/07-27.1 Kato, T., Watanabe, M. F., Watanabe M. 1991 Allozyme divergence in Microcystis (Cyanophyceae) and its taxonomic inference. Algol. Stud., 64, 129-140. Keywords: cyanophytes/cyanobacteria; Microcystis; allozyme divergence; allozyme genotype; allozyme study; cell size; molecular taxonomy Strain(s): 1055,  1058,  1061,  1063,  1064,  1067,  1068,  1070,  1071,  1074,  1077,  1079,  1081,  1084,  1086,  1090,  1091,  1093,  1095,  1097,  1098  Kato, T., Watanabe, M. F., Watanabe, M., Hara, Y. 1991 Allozyme genotype and toxin omposition of the Microcystis strains from Lake Okutama-ko (1). Bull. Natn. Sci. Mus., Tokyo, Ser., B 17, 1-4. Strain(s): 1140,  1141,  1145,  1152,  1159,  1160,  1161,  1163  Kato, Y., Imamura, N., 2008 Effect of calcium ion on uptake of amino acids by symbiotic Chlorella F36-ZK isolated from Japanese Paramecium bursaria. Plant Sci., 174, 88-96. Keywords: Paramecium bursaria; Chlorella; Calcium; Divalent cation; Amino acid transport; Symbiosis Strain(s): 227,  2157,  2540  DOI: 10.1016/j.plantsci.2007.10.001 Kato, Y., Ueno, S., Imamura, N. 2006 Studies on the nitrogen utilization of endosymbiotic algae isolated from Japanese Paramecium bursaria. Plant Sci., 170, 481-486. Keywords: Endosymbiont; Paramecium bursaria; Nitrogen utilization; Chlorella Strain(s): 227,  2540,  2541  DOI: 10.1016/j.plantsci.2005.09.018 Katoh, H., Furukawa, J., Tomita-Yokotani, K. and Nishi 2012 Isolation and purification of an axenic diazotrophic drought-tolerant cyanobacterium, Nostoc commune, from natural cyanobacterial crusts and its utilization for field research on soils polluted with radioisotopes. Biochim. Biophys. Acta-Bioenerg., 18, 1499-1505. Keywords: Cyanobacterium; Nostoc commune; Desiccation; Radiation; Space agriculture Strain(s): 2114  PubMed: 22417797 DOI: 10.1016/j.bbabio.2012.02.039 Katoh, H., Shiga, S., Nakahira, Y., Ohmori, M. 2003 Isolation and characterization of drought-tolerant cyanobacterium Nostoc sp. HK-01. Microbes Environ., 18, 82-88. Keywords: cyanobacterium; drought-tolerance; hormogonia; Nostoc Strain(s): 2109  DOI: 10.1264/jsme2.18.82 Katoh, T. & Gantt, E. 1979 Photosynthetic vesicles with bound phycobilisomes from Anbaena variabilis. Biochim. Biophys. Acta, 546, 383-393. Strain(s): 2093  DOI: 10.1016/0005-2728(79)90075-6 Katoh, T., Hirokawa, T., Miyachi, S. 1958 Effect of pre-illumination upon the Hill reaction in Chlorella cells. J. Biochem., 45, 907-912. Strain(s): 2170  Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. 2015 Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. Plant Syst. Evol., 301, 1725-1733. Keywords: Volvocales; Divergent actin Strain(s): 351,  546,  576,  717,  3374  DOI: 10.1007/s00606-014-1187-5 Kato-Minoura, T., Okumura, M., Hirono, M., Kamiya, R. 2003 A novel family of unconventional actins in Volvocalean algae. J. Mol. Evol., 57, 555-561. Keywords: Chlamydomonas; phylogeny; Volvocales Strain(s): 158,  351,  546,  569  PubMed: 14738314 DOI: 10.1007/s00239-003-2509-3 Katsuda, T., Lababpour, A., Shimahara, K., Katoh, S. 2004 Astaxanthin production by Haematococcus pluvialis under illumination with LEDs. Enzyme Microb. Technol., 35, 81-86. Keywords: astaxanthin; light emitting diode; wavelength; accumulation of astaxanthin Strain(s): 144  DOI: 10.1016/j.enzmictec.2004.03.016 Katsuda, T., Shimahara, K., Shiraishi, H., Yamagami, K., Ranjbar, R., Katoh, S. 2006 Effect of flashing light from blue light emitting diodes on cell growth and astaxanthin production of Haematococcus pluvialis. J. Biosci. Bioeng., 102, 442-446. Keywords: flashing light; blue light emitting diode; astaxanthin; Haematococcus pluvialis Strain(s): 144  PubMed: 17189172 DOI: 10.1263/jbb.102.442 Katsuda, T., Shiraishi, H., Ishizu, N., Ranjbar, R., Katoh, S. 2008 Effect of light intensity and frequency of flashing light from blue light emitting diodes on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 105, 216-220. Keywords: flashing light; blue light emitting diode; light intensity; astaxanthin; Haematococcus pluvialis Strain(s): 144  PubMed: 18397771 DOI: 10.1263/jbb.105.216 Katsumata, M., Ikushima, Y., Bennett, K., Sato, Y., Takeuchi, A., Tatarazako, N., Hakamata, T. 2017 Validation of rapid algal bioassay using delayed fluorescence in an interlaboratory ring study. Sci. Total Environ., 605-606, 842-851. Keywords: Chemical toxicity test; Growth inhibition; Alga; Delayed fluorescence; Surrogate of biomass Strain(s): 35  PubMed: 28683428 DOI: 10.1016/j.scitotenv.2017.06.228 Katsumata, M., Koike, T., Nishikawa, M., Kazumura, K., Tsuchiya, H. 2006 Rapid ecotoxicological bioassay using delayed fluorescence in the green alga Pseudokirchneriella subcapitata. Water Res., 40, 3393-3400. Keywords: Delayed fluorescence; Algal growth inhibition test; Pseudokirchneriella subcapitata; Simazine (CAT); 3,5-dichlorophenol (3,5-DCP) Strain(s): 35  PubMed: 16970970 DOI: 10.1016/j.watres.2006.07.016 Kawachi, M., Kataoka, T., Sato, M., Noël, M.-H., Kuwata, A., Demura, M., Yamaguchi, H. 2016 Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community. Gene, 576, 708-716. Keywords: 18S rRNA gene; 454 pyros equencing; Cryopreservation; Photosynthetic picoeukaryotes Strain(s): 765,  1966,  2842  PubMed: 26506442 DOI: 10.1016/j.gene.2015.10.033 Kawachi, M., Nakayama, T., Kayama, M., Nomura, M., Miyashita, H., Bojo, O., Rhodes, L., Sym, S., Pienaar, R. N., Probert, I., Inouye, I., Kamikawa, R. 2021 Rappemonads are haptophyte phytoplankton. Curr. Biol., 31, 2395-2403. Strain(s): 3900  PubMed: 33773100 DOI: 10.1016/j.cub.2021.03.012 Kawafune K., Hongoh, Y., Hamaji, T ., Sakamoto, T., Kurata, T., Hirooka, S., Miyagishima, S., Nozaki, H. 2015 Two different rickettsial bacteria invading Volvox carteri. PLoS One, 10, e0116192 (article ID). Strain(s): 397,  398,  732,  733,  866  PubMed: 25671568 DOI: 10.1371/journal.pone.0116192 Kawafune, K., Hongoh, Y., Hamaji, T., Nozaki, H. 2012 Molecular identification of rickettsial endosymbionts in the non-phagotrophic Volvocalean green algae. PLoS One, 7, e31749 (article ID). Strain(s): 425,  577  PubMed: 22363720 DOI: 10.1371/journal.pone.0031749 Kawafune, K., Hongoh, Y., Nozaki, H. 2014 A rickettsial endosymbiont inhabiting the cytoplasm of Volvox carteri (Volvocales, Chlorophyceae). Phycologia, 53, 95-99. Keywords: Endosymbiont; Fluorescence in situ hybridization; Phylogenetic analysis; Rickettsia; Rickettsiaceae; Volvox carteri Strain(s): 424,  425,  577  DOI: 10.2216/13-193.1 Kawafune, K., Sato, M., Toyooka, K., Nozaki, H. 2013 Ultrastructure of the rickettsial endosymbiont "MIDORIKO" in the green alga Carteria cerasiformis as revealed by high-pressure freezing and freeze-substitution fixation. Protoplasma, 250, 949-953. Keywords: Transmission electron microscopy; High-pressure freezing and freeze-substitution fixation; Rickettsiaceae; Endosymbiont; Carteria cerasiformis Strain(s): 424,  426  PubMed: 23178999 DOI: 10.1007/s00709-012-0469-4 Kawaguchi, Y. W., Tsuchikane, Y., Tanaka, K., Taji, T., Suzuki, Y., Toyoda, A., Ito, M., Watano, Y., Nishiyama, T., Sekimoto, H., Tsuchimatsu, T. 2023 Extensive copy number variation explains genome size variation in the unicellular Zygnematophycean alga, Closterium peracerosum–strigosum–littorale complex. Genome Biol. Evol., 15, evad115 (article ID). Keywords: gene duplication; dosage compensation; copy number variation; green algae Strain(s): 53,  54,  58,  59,  62,  63,  64,  65,  68,  261,  2666,  4319,  4320,  4321,  4548,  4550,  4551,  4552  PubMed: 37348049 DOI: 10.1093/gbe/evad115 Kawahara, K., Sagehashi, M., Fujii, T., Fujita, H., Hu, H.-Y., Sakoda, A. 2011 Potential of a green alga Botryococcus braunii for simultaneous water purification and biofuel production under open-air condition. J. Water Environ. Technol., 9, 29-37. Keywords: biofuel production; Botryococcus braunii; Microcystis aeruginosa; water purification Strain(s): 87,  836,  1090  DOI: 10.2965/jwet.2011.29 Kawahara, T., Kumaki, Y., Kamada, T., Ishii, T., Okino, T. 2009 Absolute configuration of chlorosulfolipids from the chrysophyta Ochromonas danica. J. Org. Chem., 74, 6016-6024. Strain(s): 2142  PubMed: 19627129 DOI: 10.1021/jo900860e Kawahata, C., Yamamuro, M., Shiraiwa, Y. 2013 Changes in alkaline band formation and calcification of corticated charophyte Chara globularis. SpringerPlus, 2, 85 (article ID). Keywords: Chara corallina; Chara globularis; Alkaline band; Acid band; SEM Strain(s): 1585  PubMed: 23543879 DOI: 10.1186/2193-1801-2-85 Kawai, H., Inouye, I. 1989 Flagellar autofluorescence in forty-four chloraphyll c-containig algae. Phycologia, 28, 222-227. Strain(s): 5,  15,  161  DOI: 10.2216/i0031-8884-28-2-222.1 Kawai, H., Maeba, S., Sasaki, H., Okuda, K., Henry, E. C. 2003 Schizocladia ischiensis: a new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae. Protist, 154, 211-228. Strain(s): 1044  PubMed: 13677449 DOI: 10.1078/143446103322166518 Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022 Highly efficient transformation of the model zygnematophycean alga Closterium peracerosum-strigosum-littorale complex by square-pulse electroporation. New Phytol., 233, 569-578. Keywords: Closterium; electroporation; evolution; transformation; Zygnematophyceae Strain(s): 67,  68  PubMed: 34605030 DOI: 10.1111/nph.17763 Kawai, S., Araki, S., Kodama, Y. 2017 No mutual symbiosis following infection of algae-free Paramecium bursaria with symbiotic algae from Mayorella viridis. Symbiosis, 75, 51-59. Keywords: Algae; Endosymbiosis; Mayorella viridis; Paramecium bursaria; Phalloidin Strain(s): 692  DOI: 10.1007/s13199-017-0517-0 Kawakami, K., Hamaguchi, T., Hirose, Y., Kosumi, D., Miyata, M., Kamiya, N., Yonekura, K. 2022 Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome. Nat. Commun., 13, 3389 (article ID). Strain(s): 2134  PubMed: 35715389 DOI: 10.1038/s41467-022-30962-9 Kawakami, K., Nagao, R., Tahara, Y. O., Hamaguchi, T., Suzuki, T., Dohmae, N., Kosumi, D., Shen, J.-R., Miyata, M., Yonekura, K., Kamiya, N. 2021 Structural implications for a phycobilisome complex from the thermophilic cyanobacterium Thermosynechococcus vulcanus. Biochim. Biophys. Acta-Bioenerg., 1862, 148458 (article ID). Keywords: Cyanobacteria; Electron microscopy; GraFix; Phycobilisome Strain(s): 2134  PubMed: 34062150 DOI: 10.1016/j.bbabio.2021.148458 Kawamura, K., Sumii, K., Matsumoto, M., Nakase, D., Kosaki, Y., Ishikawa, M. 2018 Determining the optimal cultivation strategy for microalgae for biodiesel production using flow cytometric monitoring and mathematical modeling. Biomass Bioenerg., 117, 24-31. Keywords: Biofuel; Logistic equation; Optimal cultivation; Simulation model; Triacylglycerols Strain(s): 2168  DOI: 10.1016/j.biombioe.2018.07.005 Kawanobe, K. 1990 A report in the completion of the research work [Chôsa kenkyû syûryô hôkoku]. Unpublished report in Kankyô Hozen Kyôkai, 3 pp. (in Japanese). Strain(s): 35,  227  Kawasaki, S., Yoshida, R., Ohkoshi, K., Toyoshima, H., 2020 Coelastrella astaxanthina sp. nov. (Sphaeropleales, Chlorophyceae), a novel microalga isolated from an asphalt surface in midsummer in Japan. Phycol. Res., 68, 107-114. Keywords: astaxanthin; dry conditions; photo-oxidative stress; Scenedesmaceae; terrestrial microalgae Strain(s): 2151  DOI: 10.1111/pre.12412 Kawase, Y.2, Imamura, S., Tanaka, K. 2017 A MYB-type transcription factor, MYB2, represses light-harvesting protein genes in Cyanidioschyzon merolae. FEBS Lett., 591, 2439-2448. Keywords: dark acclimation; MYB-type transcription factor; phycobilisome Strain(s): 3377  PubMed: 28748638 DOI: 10.1002/1873-3468.12763 Kaya, K. & Sano, T. 1998 A photodetoxifi-cation mechanism of the cyanobacterial hepatotoxin microcystin-LR by ultraviolet irradiation. Chem. Res. Toxicol., 11, 159-163. Strain(s): 88  Kaya, K. & Watanabe, M. M. 1990 Microcystin composition of an axenic clonal strain of Microcystis viridis and Microcystis viridis-containing waterblooms in Japanese freshwaters. J. Appl. Phycol., 2, 173-178. Keywords: axenic Microcystis viridis; microcystin; toxic waterbloom; Japanese lakes Strain(s): 102  DOI: 10.1007/BF00023379 Kaya, K., Sano, T. 2016 Chapter 18. Cyanobacterial retinoids. In Handbook of cyanobacterial monitoring and cyanotoxin analysis, Eds. byMeriluoto, J., Spoof, L., Codd, G. A., John Wiley & Sons, Ltd. pp. 173-178. Strain(s): 36,  44,  45,  46,  204,  512,  610,  1222  DOI: 10.1002/9781119068761.ch18 Kaya, K., Shiraishi, F., Uchida, H., Sano, T. 2011 A novel retinoic acid analogue, 7-hydroxy retinoic acid, isolated from cyanobacteria. Biochim. Biophys. Acta-Gen. Subj., 1810, 414-419. Keywords: 7-hydroxy retinoic acid; RAR agonistic activity; cyanobacteria; UV stability Strain(s): 44,  45,  46,  512,  610,  931  PubMed: 21145941 DOI: 10.1016/j.bbagen.2010.11.009 Kayama, M., Chen, J.-F., Nakada, T., Nishimura, Y., Shikanai, T., Azuma, T., Miyashita, H., Takaichi, S., Kashiyama, Y., Kamikawa, R. 2020 A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems. BMC Biol., 18, 126 (article ID). Keywords: Carotenoid; NADPH; Non-photosynthetic plastid; Plastoquinol; Plastid terminal oxidase; Transient RNA interference knockdown Strain(s): 4405  PubMed: 32938439 DOI: 10.1186/s12915-020-00853-w Kayano, K. & Shiraiwa, Y. 2009 Physiological regulation of coccolith polysaccharide production by phosphate availability in the coccolithophorid Emiliania huxleyi. Plant Cell Physiol., 50, 1522-1531. Strain(s): 837  PubMed: 19587028 DOI: 10.1093/pcp/pcp097 Kayano, K., Saruwatari, K., Kogure, T., Shiraiwa, Y. 2011 Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in in vitro CaCO3 crystallization. Mar. Biotechnol., 13, 83-92. Keywords: Acid polysaccharide; Biomineralization; Coccolith; Coccolith polysaccharide; Calcium carbonate crystalization; Emiliania huxleyi Strain(s): 837  PubMed: 20336339 DOI: 10.1007/s10126-010-9272-4 Keawtawee, T., Fukami, K., Songsangjinda, P., Muangyao, P. 2011 Isolation and characterization of Noctiluca-killing bacteria from a shrimp aquaculture pond in Thailand. Fish. Sci., 77, 657-664. Keywords: Algicidal bacteria; Noctiluca scintillans; HABs; Shrimp aquacluture Strain(s): 1,  6  DOI: 10.1007/s12562-011-0373-4 Keeling, p. J., Palmer, J. D. 2001 Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc. Nati. Acad. Sci. U. S. A., 98, 10745-10750. Keywords: phylogeny; protein insertions; apicomplexa; recombination Strain(s): 484  PubMed: 11526220 DOI: 10.1073/pnas.191337098 Kenzaki, A., Okunishi, S., Tomoda, T., Shioura, Y., Uchida, M., Tezuka, N., Maeda, H. 2022 Observation of the feeding behaviour of reared Japanese eel Anguilla japonica leptocephali fed picocyanobacteria Synechococcus spp. J. Fish Biol., 100, 727-737. Keywords: Anguilla japonica; density dependence; feeding behaviour; feeding selectivity; photoperiodic condition Strain(s): 972,  976,  979  PubMed: 34958491 DOI: 10.1111/jfb.14986 Kerfeld, CA., Melnicki, MR., Sutter M., Dominguez-Martin, MA. 2017 Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs. New Phytol., 215, 937-951. Keywords: carotenoids; carotenoproteins; cyanobacteria; nonphotochemical quenching; photoprotection; phylogenomics; protein structure; singlet oxygen (1O2) quenching Strain(s): 39,  81,  843  PubMed: 28675536 DOI: 10.1111/nph.14670 Keshari, N., Gugger, M., Zhu, T., Lu, X. 2019 Compatible solutes profiling and carbohydrate feedstock from diversified cyanobacteria. Algal Res., 43, 101637 (article ID). Keywords: Cyanobacteria; Compatible solutes; Glucosylglycerol (GG); Sucrose; Trehalose; Glycogen Strain(s): 31,  592,  1031  DOI: 10.1016/j.algal.2019.101637 Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J., Alverson, A. J. 2014 Transcriptomic insights into the life history of Bolidophytes, the sister lineage to diatoms. J. Phycol., 50, 977-983. Keywords: Bolidomonas; diatoms; diplontic; haplodiplontic; life cycle; Parmales; transcriptome Strain(s): 2682  PubMed: 26988780 DOI: 10.1111/jpy.12222 Kessler, E. & Huss, V. A. R. 1992 Comparative physiology and biochemistry and taxonomic assignment of the Chlorella (Chlorophyceae) strains of the Culture Collection of the University of Texas at Austin. J. Phycol., 28, 550-553. Keywords: chemotaxonomy; Chlorella; Chlorophyta; UTEX culture collection; utilization for research and biotechnology Strain(s): 686,  687,  2150,  2151,  2160,  2163,  2169,  2175,  2176  DOI: 10.1111/j.0022-3646.1992.00550.x Kettler, G., Martiny, A. C., Huang, K., Zucker, J., Coleman, M. L., Rodrigue, S., Chen, F., Lapidus, A., Ferriera, S., Johnson, J., Steglich, C., Church, G. M., Richardson, P., Chisholm, S. W. 2007 Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS One, 3, e231 (article ID). Strain(s): 2881,  3376  PubMed: 18159947 DOI: 10.1371/journal.pgen.0030231 Khan, S. M. M. K., Arikawa, M., Omura, G., Suetomo, Y., Kakuta, S., Suzaki, T. 2003 Axopodial contraction in the heliozoon Raphidiophrys contractilis requires extracellular Ca2+. Zool. Sci., 20, 1367-1372. Keywords: contraction; microtubules; contractile tubules; heliozoa; calcium Strain(s): 2498  DOI: 10.2108/zsj.20.1367 Khan, S. M. M. K., Arikawa, M., Suzaki, T. 2005 Toxic effect of heavy metal ions on the axopodia of the heliozoon Raphidiophrys contractilis. Jpn. J. Protozool., 38, 44-45. Strain(s): 2498  Khan, S. M. M. K., Yoshimura, C., Arikawa, M., Omura, G., Nishiyama, S., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Axopodial degradation in the heliozoon Raphidiophrys contractilis: a novel bioassay system for detecting heavy metal toxicity in an aquatic environment. Environ. Sci., 13, 193-200. Strain(s): 2498  PubMed: 17095991 Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y. 2017 Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex. Chemosphere, 175, 200-209. Keywords: Sinking rate; Thalassiosira pseudonana; Skeletonema marinoi-dohrnii complex; Diuron Strain(s): 324  PubMed: 28222374 DOI: 10.1016/j.chemosphere.2017.02.054 Khoo, K. S., Lee, S. Y., Ooi, C. W., Fu, X., Miao, X., Ling, T. C., Show, P. L. 2019 Recent advances in biorefinery of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 288, 121606 (article ID). Keywords: Astaxanthin; Haematococcus pluvialis; Cultivation; Pretreatment; Biorefinery Strain(s): 144  PubMed: 31178260 DOI: 10.1016/j.biortech.2019.121606 Khudzari, J., Fukuda, S., Shiraiwa, Y., Iwamoto, K. 2022 Kinetic properties of 137Cs uptake by the cesium‑accumulating eustigmatophycean microalga. Environ. Sci. Pollut. Res., 30, 34460–34467. Keywords: 137Cs; Radioactive cesium-accumulating mechanism; Cesium-accumulating microalgae; Vacuoliviride crystalliferum (eustigmatophyceae); Radiocesium phycoremediation Strain(s): 2860  PubMed: 36509956 DOI: 10.1007/s11356-022-24573-6 Ki, J.-S. & Han, M.-S. 2007 Nuclear rDNA and chloroplast rbcL, rbcS and IGS sequence data, and their implications from the Japanese, Korean, and North American harmful algae, Heterosigma akashiwo (Raphidophyceae). Environ. Res., 103, 299-304. Keywords: Heterosigma akashiwo; blooms; nuclear rDNA; rbcS; IGS Strain(s): 293  DOI: 10.1016/j.envres.2006.08.014 Ki, J.-S. & Han, M.-S. 2007 Rapid molecular identification of the harmful freshwater dinoflagellate Peridinium in various life stages using genus-specific single-cell PCR. J. Appl. Phycol., 19, 467-470. Keywords: dinoflagellate cyst; planozygote; rDNA Strain(s): 495  DOI: 10.1007/s10811-007-9157-8 Kim, B.-H., Oh, H.-M., Lee, Y.-K., Choi, G.-G., Ahn, C.-y., Yoon, B.-D., Kim, H.-S., 2006 Simple method for RNA preparation from cyanobacteria. J. Phycol., 42, 1137-1141. Keywords: bead–phenol–chloroform method; cyanobacteria; RNA extraction; xanthogenate–SDS–phenol method Strain(s): 33,  39,  230  DOI: 10.1111/j.1529-8817.2006.00263.x Kim, B.-H., Ramanan, R., Cho, D.-H., Choi, G.-G., La, H.-J., Ahn, C.-Y., Oh, H.-M., Kim, H.-S. 2012 Simple, rapid and cost-effective method for high quality nucleic acids extraction from different strains of Botryococcus braunii. PLoS One, 7, e37770 (article ID). Strain(s): 836  PubMed: 22662217 DOI: 10.1371/journal.pone.0037770 Kim, B.-H., Ramanan, R., Kang, Z., Cho, D.-H., Oh, H.-M., Kim, H.-S. 2016 Chlorella sorokiniana HS1, a novel freshwater green algal strain, grows and hyperaccumulates lipid droplets in seawater salinity. Biomass Bioenerg., 85, 300-305. Keywords: Chlorella; Salt stress; Green algae; Lipid droplets; Biodiesel; Commercialization Strain(s): 2150  DOI: 10.1016/j.biombioe.2015.12.026 Kim, B.-H., Sang, M., Hwang, S.-J., Han, M.-S. 2008 In situ bacterial mitigation of the toxic cyanobacterium Microcystis aeruginosa: implications for biological bloom control. Limnol. Oceanogr. Meth., 6, 513-522. Strain(s): 19,  44,  101,  298  DOI: 10.4319/lom.2008.6.513 Kim, C.-J., Hung, Y.-H., Oh, H.-M, 2007 Factors indicating culture status during cultivation of Spirulina (Arthrospira) platensis. J. Microbiol., 45, 122-127. Keywords: coil number; culture status; syanobacteria; floating activity; Spirulona platensis Strain(s): 39,  46  PubMed: 17483796 Kim, C.-J., Jung, Y.-H., Ahn, C.-Y., Lee, Y.-K., Oh, H.-M. 2010 Adsorption of turbid materials by the cyanobacterium Phormidium parchydematicum. J. Appl. Phycol., 22, 181-186. Keywords: Chlorella vulgaris; Clay; Cyanobacteria; Phormidium parchydematicum; Turbid material Strain(s): 39  DOI: 10.1007/s10811-009-9440-y Kim, D., Nakamura, A., Okamoto, T., Komatsu, N., Oda, T., Ishimatsu, A., Muramatsu, T. 1999 Toxic potential of the raphidophyte Olisthodiscus luteus: mediation by reactive oxygen species. J. Plankton Res., 21, 1017-1027. Strain(s): 15  DOI: 10.1093/plankt/21.6.1017 Kim, D., Oda, T., Ishimatsu, A., Muramatsu, T. 2000 Galacturonic-acid-induced increase of superoxide production in red tide phytoplankton Chattonella marina and Heterosigma akashiwo. Biosci. Biotechnol. Biochem., 64, 911-914. Keywords: red tide plankton; Chattonella marina; Heterosigma akashiwo; galacturonic acid; reactive oxygen species Strain(s): 6  PubMed: 10830520 DOI: 10.1271/bbb.64.911 Kim, D., Okamoto, T., Oda, T., Tachibana, K., Lee, K. S., Ishimatsu, A., Matsuyama, Y., Honjo, T., Muramatsu, T. 2001 Possible involvement of the glycocalyx in the ichthyotoxicity of Chattonella marina (Raphidophyceae): immunological approach using antiserum against cell surface structures of the flagellate. Mar. Biol., 139, 625-632. Strain(s): 6,  15  DOI: 10.1007/s002270100614 Kim, D., Sato, Y., Oda, T., Muramatsu, T., Matsuyama, Y., Honjo, T. 2000 Specific toxic effect of dinoflagellate Heterocapsa circularisquama on the rotifer Brachionus plicatilis. Biosci. Biotechnol. Biochem., 64, 2719-2722. Keywords: red tide; Heterocapsa circularisquama; rotifer; toxicity; dinoflagellate Strain(s): 6  PubMed: 11210146 DOI: 10.1271/bbb.64.2719 Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2004 Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua. Aquat. Microb. Ecol., 35, 57-64. Keywords: Cell cycles; Chattonella antiqua; Hydrogen peroxide; NIES culture tank; Reactive oxygen species; Red tide; Superoxide anion Strain(s): 1  DOI: 10.3354/ame035057 Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2005 Changes in O2- and H2O2 production by Chattonella antiqua during diel vertical migration under nutrient stratification. Aquat. Microb. Ecol., 39, 183-191. Keywords: Chattonella antiqua; Diel vertical migration; Hydrogen peroxide; Nutrient stratification; Reactive oxygen species; Superoxide anion Strain(s): 1  DOI: 10.3354/ame039183 Kim, E., Graham, L. E. 2008 EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS One, 3, e0002621 (article ID). Strain(s): 1335  PubMed: 18612431 DOI: 10.1371/journal.pone.0002621 Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466. Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution Strain(s): 936,  955,  1333,  1335  PubMed: 16982820 DOI: 10.1093/molbev/msl120 Kim, E., Wilcox, L. W., Fawley, M. W., Graham, L. E. 2006 Phylogenetic position of the green flagellate Mesostigma viride based on alpha-tubulin and beta-tubulin gene sequences. Int. J. Plant Sci., 167, 873-883. Keywords: Mesostigma; Coleochaete; Pterosperma; Nephroselmis; Mantoniella; Streptophyta; Viridiplantae; α-tubulin; β-tubulin Strain(s): 955  DOI: 10.1086/504391 Kim, J. I., Shin, W., Treimer, R. E. 2010 Multigene analyses of photosynthetic euglenoids and new family, Phacaceae (Euglenales). J. Phycol., 46, 1278-1287. Keywords: discoid chloroplast; Euglenaceae; Euglenales; multigene analysis; Phacaceae; phylogeny; synapomorphy Strain(s): 381  DOI: 10.1111/j.1529-8817.2010.00910.x Kim, J.-H., Park, B. S., Kim, J. H. 2023 Comprehensive understanding of the life history of harmful raphidophyte Heterosigma akashiwo: Integrating in situ and in vitro observations. Harmful Algae, 129, 102521 (article ID). Keywords: Heterosigma akashiwo; Harmful alga; Raphidophyceae; Life history; Life cycle; Sexual reproduction; Hologamete; Homothallism; Zygote (large cell); Multiple cells; Cell cluster; Cyst cluster Strain(s): 5,  293  PubMed: 37951620 DOI: 10.1016/j.hal.2023.102521 Kim, K., Yoon, Y., Cho, H., Hwang, S. J 2020 Molecular probes to evaluate the synthesis and production potential of an odorous compound (2-methylisoborneol) in cyanobacteria. Int. J. Environ. Res. Public Health, 17, 1933 (article ID). Keywords: 2-Methylisoborneol (2-MIB); cyanobacteria; molecular probes; mibC; real-time PCR Strain(s): 19,  512,  824  PubMed: 32188031 DOI: 10.3390/ijerph17061933 Kim, M., Shin, B., Lee, J., Park, H. Y., Park, W. 2019 Culture-independent and culture-dependent analyses of the bacterial community in the phycosphere of cyanobloom-forming Microcystis aeruginosa. Sci Rep, 9, 20416 (article ID). Strain(s): 298  PubMed: 31892695 DOI: 10.1038/s41598-019-56882-1 Kim, M.-C., Yoshinaga, I., Imai, I., Nagasaki, K., Itakura, S., Ishida, Y. 1998 A close relationship between algicidal bacteria and termination of Heterosigma akashiwo (Raphidophyceae) blooms in Hiroshima Bay, Japan. Mar. Ecol. Prog. Ser., 170, 25-32. Keywords: algicidal bacteria; marine bacteria; marine phytoplankton; red tide; bloom; Raphidophyceae; Heterosigma akashiwo Strain(s): 1  DOI: 10.3354/meps170025 Kim, T. Y., Hong, J. E., Park, H. M., Lee, U. J., Lee, S-Y. 2020 Decontamination of low-level contaminated water from radioactive cesium and cobalt using microalgae. J. Radioanal. Nucl. Chem., 323, 903-908. Keywords: Radionuclide; Microalgae; Cobalt; Cesium; Decontamination; Biosorption Strain(s): 2860  DOI: 10.1007/s10967-019-07008-4 Kim, Y. E., Matter, I. A., Lee, N., Jung, M., Lee, Y. C., Choi, S. A., Lee, S. Y., Kim, J. R., Oh, Y. K. 2020 Enhancement of astaxanthin production by Haematococcus pluvialis using magnesium aminoclay nanoparticles. Bioresour. Technol., 307, 123270 (article ID). Keywords: Haematococcus pluvialis; Astaxanthin; Nanoparticle; Aminoclay; Lipid Strain(s): 144  PubMed: 32253126 DOI: 10.1016/j.biortech.2020.123270 Kim, Y.-S., Oyaizu, H., Matsumoto, S, Watanabe, M. M., Nozaki, H. 1994 Chloroplast small-subunit ribosomal RNA gene sequence from Chlamydomonas parkeae (Chlorophyta) : molecular phylogeny of a green alga with a peculiar pigment composition. Eur. J. Phycol., 29, 213-217. Keywords: Chlamydomonas parkeae; Chlorophyta; chloroplast small-subunit (SSU) rRNA; phylogeny; pigment composition Strain(s): 228,  254,  440,  468,  666  DOI: 10.1080/09670269400650661 Kimbara, R., Isaka, N., Matsuzaki, R., Kawai-Toyooka, H., Kawachi, M., Nozaki, H. 2019 Morphological and molecular identification of the dioecious “African species Volvox rousseletii (Chlorophyceae) in the water column of a Japanese lake based on field-collected and cultured materials. PLoS One, 14, e0221632 (article ID). Strain(s): 4336,  4337,  4338,  4339,  4340,  4341,  4342  PubMed: 31465476 DOI: 10.1371/journal.pone.0221632 Kimpel, D. L., Togasaki, R. K., Miyachi, S. 1983 Carbonic anhydrase in Chlamydomonas reinhardtii I. Localization. Plant Cell Physiol., 24, 255-259. Keywords: carbonic anhydrase; cell wall-less mutant; Chyamydomonas reinhardtii; periplasm; wall lysing enzyme Strain(s): 2237,  2238  DOI: 10.1093/pcp/24.2.255 Kimura, B. & Ishida, Y. 1985 Photophago-trophy in Uroglena americana , Chrysophyceae. Jpn. J. Limnol., 46, 315-318. Strain(s): 395  Kimura, B. & Ishida, Y. 1986 Possible phago-trophic feeding of bacteria in a freshwater red tide Chrysophyceae Uroglena americana. Bull. Jpn. Soc. Sci. Fish., 52, 697-701. Strain(s): 395  Kimura, B., Ishida, Y., Kadota, H. 1986 Effect of naturally collected bacteria on growth of Uroglena americana, a freshwater red tide Chrysophyceae. Bull. Jpn. Soc. Sci. Fish., 52, 691-696. Strain(s): 395  Kimura, J. 2011 Screening for allelopathic activity on algal growth. Bull. Hiroshima Pref. Tech. Res. Inst., Publ. Health Environ. Center, 19, 37-46 (in Japanese). Keywords: Microcystis; Chlorella; Nitzschia; growth inhibition; allelopathy Strain(s): 88,  487,  642  Kimura, K. & Tomaru, Y. 2017 Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses. Aquat. Microb. Ecol., 79, 79-83. Keywords: Water temperature; Water salinity; Host-virus interactions; Diatom lysis Strain(s): 3714,  3716  DOI: 10.3354/ame01818 Kimura, K., Tomaru, Y. 2013 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. strain SS628-11 isolated from western Japan. PLoS One, 8, e82013 (article ID). Strain(s): 3718  PubMed: 24358139 DOI: 10.1371/journal.pone.0082013 Kimura, S., Yamada, T., Ban, S., Koyama, M., Toda, T. 2019 Nutrient removal from anaerobic digestion effluents of aquatic macrophytes with the green alga, Chlorella sorokiniana. Biochem. Eng. J., 142, 170-177. Keywords: Chlorella sorokiniana; anaerobic digestion effluent; maximum algal yield; nutrient removal rate; aquatic macrophytes Strain(s): 2173  DOI: 10.1016/j.bej.2018.12.001 Kimura, Y., Kimura, S., Sato, S., Katho, H., Abe, T., Arai, M., Tomita-Yokotani, K. 2015 Evoluation of a cyanobacterium, Nostoc sp. HK-01, as food material for space agriculture on Mars. Biological Sciences in Space, 29, 24-31. Keywords: Cyanobacteria; Food; Martian regolith simulant (MRS); Nostoc sp. HK-01; Radicalscavenging activity; Space Agriculture Strain(s): 2109,  2114  DOI: 10.2187/bss.29.24 Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017 Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01. Biological Sciences in Space, 31, 1-8. Keywords: compatible solute; cyanobacteria; extracellular polysaccharides; heat tolerance; life cycle of cell; Nostoc sp. HK-01 Strain(s): 2109  DOI: 10.2187/bss.31.1 Kinegawa, R., Gala de Pablo, J., Wang, Y., Hiramatsu, K., Goda, K. 2023 Label-free multiphoton imaging flow cytometry. Cytom. Part A, , 584-592. Strain(s): 2175  PubMed: 36799568 DOI: 10.1002/cyto.a.24723 Kinoshita, E., Suzaki, T., Shigenaka, Y. 2001 The ultrastructure of contractile tubules in the heliozoan Actinophrys sol and their possible involvement in rapid axopodial contraction. J. Eucaryot. Microbiol., 48, 519-526. Keywords: Axopodium; Ca2+-contraction; colchicine; electron microscopy Strain(s): 2497  PubMed: 11596916 DOI: 10.1111/j.1550-7408.2001.tb00187.x Kinoshita, E., Suzaki, T., Sugiyama, M., Shigenaka, Y. 1995 Ultrastructure and rapid axopodial contraction of a heliozoan, Raphidiophyrys contractilis sp. nov. J. Eucaryot. Microbiol., 42, 283-288. Keywords: Contraction; Heliozoa; microtubule pattern; new species; Raphidiophyrys; silicic scale; X-ray microanalysis Strain(s): 2498,  3374  DOI: 10.1111/j.1550-7408.1995.tb01581.x Kinugawa, K., Etoh, M., Kuba, T., Kusuda, T. 1999 A possibility of control and prevention of excessive phytoplankton growth by photochromism. J. Jpn. Soc. Wat. Environ., 22, 932-937 (in Japanese with English summary). Keywords: photochromism; spironaphthoxazine; shielding sunlight; algal growth potential; eutrophication Strain(s): 98  Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017 Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities. Algal Res., 21, 213-222. Keywords: Microalgae; Immobilized cultivation; Irradiation; Carbon dioxide; Twin-Layer; Carotenoid Strain(s): 144  DOI: 10.1016/j.algal.2016.10.025 Kishi, M. & Toda, T. 2018 Carbon fixation properties of three alkalihalophilic microalgal strains under high alkalinity. J. Appl. Phycol., 30, 401–410. Keywords: Algae; Cyanobacteria; Carbon dioxide; Alkalinity; Growth optimization Strain(s): 39,  2257  DOI: 10.1007/s10811-017-1226-z Kishi, M., Kawai, M., Toda, T. 2015 Heterotrophic utilization of ethylene glycol and propylene glycol by Chlorella protothecoides. Algal Res., 11, 428-434. Keywords: algae; Chlorella protothecoides; Ethylene glycol; Propylene glycol; Heterotrophic; pH Strain(s): 2151,  2168,  2170  DOI: 10.1016/j.algal.2015.04.020 Kishi, M., Yamada, Y., Katayama, T., Matsuyama, T., Toda, T. 2020 Carbon mass balance in Arthrospira platensis culture with medium recycle and high CO2 supply. Appl. Sci., 10, 228 (article ID). Keywords: Arthrospira; carbon dioxide; CO2 capture and utilization; mass balance; medium recycle; pH Strain(s): 39  DOI: 10.3390/app10010228 Kisugi, T. & Okino, T. 2009 Micropeptins from the freshwater cyanobacterium Microcystis aeruginosa (NIES-100). J. Nat. Prod., 72, 777-781. Strain(s): 100  PubMed: 19260658 DOI: 10.1021/np800631t Kitamura, N., Nakagawa, T., Yoshida, Y., Matsushima, H., Asada, Y. 2006 Studies on the growth control of toxic cyanobacteria by use of the water-extracts from the dead leaves of deciduous trees. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 43, 543-549. Keywords: growth control; Microcystis aeruginosa; dead-leaves; deciduous trees; condensed tannin Strain(s): 102  DOI: 10.11532/proes1992.43.543 Kiyohara, T., Fujita, Y., Hattori, A., Watanabe, A. 1962 Effect of light on glucose assimilation in Tolypothrix tenuis. J. Gen. Appl. Microbiol., 8, 165-168. Strain(s): 37  Klemenčič, M., Funk, C. 2018 Structural and functional diversity of caspase homologues in non-metazoan organisms. Protoplasma, 255, 387-397. Strain(s): 44,  843,  2549  PubMed: 28744694 DOI: 10.1007/s00709-017-1145-5 Ko, S. R., Lee, Y. K., Srivastava, A., Park, S. H., Ahn, C. Y., Oh, H. M. 2019 The selective inhibitory activity of a fusaricidin derivative on a bloom-Forming cyanobacterium, Microcystis sp. J. Microbiol. Biotechnol., 29, 59-65. Keywords: Bloom control; cyanobacteria; fusaricidin; Microcystis; Paenibacillus polymyxa Strain(s): 23,  94  PubMed: 30394041 DOI: 10.4014/jmb.1804.04031 Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide,, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989. Keywords: coherent X-ray diffraction imaging; X-ray free-electron laser; frozen-hydrated non-crystalline specimens; cryogenic X-ray diffraction experiment; structures of cells and cellular organelles Strain(s): 2087  PubMed: 27359147 DOI: 10.1107/S1600577516007736 Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., Nakasako, M. 2021 Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep, 11, 3877 (article ID). Strain(s): 2087  PubMed: 33594220 DOI: 10.1038/s41598-021-83401-y Kobayashi, H., Ohta, S., Murao, N., Tachibana, H., Yamagata, S. 2000 Radiative transfer model for satellite remote sensing of ocean colors in coastal zones. J. Global Environ. Eng., 6, 13-31. Keywords: equation of radiative transfer; coastal pollution; discharge of soil particle; red tide Strain(s): 16  DOI: 10.1117/12.411675 Kobayashi, K., Kimura, S., Togawa, E., Wada, M. 2013 Thermal expansion behavior of hydrate paramylon in the low-temperature region. Carbohydr. Polym., 91, 543-548. Keywords: Paramylon; (1 → 3)-B-D-Glucan; Synchrotron X-ray powder diffraction; Solid-state 13C NMR; Thermal expansion; Phase transition Strain(s): 48  PubMed: 23121943 DOI: 10.1016/j.carbpol.2012.08.067 Kobayashi, M. 2000 In vivo antioxidant role of astaxanthin under oxidative stress in the green alga Haematococcus pluvialis. Appl. Microbilo. Biotechnol., 54, 550-555. Strain(s): 144  PubMed: 11092631 DOI: 10.1007/s002530000 Kobayashi, M., Hatta, K., Sugai, M. 1987 Endopolyploidy in Chlorella. Arch. Mikrobiol., 146, 309-314. Strain(s): 2170  DOI: 10.1007/BF00410927 Kobayashi, M., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1997 Abscisic acid-dependent algal morphogenesis in the unicellular green alga Haematococcus pluvialis. Plant Growth Regulation, 22, 79-85. Keywords: abscisic acid; active oxygen; carotenoid; cyst formation; drought stress; Haematococcus pluvialis Strain(s): 144  DOI: 10.1023/A:1005862809711 Kobayashi, M., Kakizono, T., Nagai, S. 1991 Astaxanthin production by a green alga, Haematococcus pluvialis accompanied with morphological changes in acetate media. J. Ferment. Bioeng., 71, 335-339. Strain(s): 144  DOI: 10.1016/0922-338X(91)90346-I Kobayashi, M., Kakizono, T., Nagai, S. 1993 Enhanced carotenoid biosynthesis by oxidative stress in acetate-induced cyst cells of a green unicellular alga, Haematococcus pluvialis. Appl. Environ. Microbiol., 59, 867-873. Strain(s): 144  PubMed: 16348895 DOI: 10.1128/AEM.59.3.867-873.1993 Kobayashi, M., Kakizono, T., Nagai, S. 1993 Photo-dependent astaxanthin biosynthesis in a green alga, Haematococcus pluvialis. Seibutsu-Kôgaku, 71, 233-237 (in Japanese with English summary). Strain(s): 144  Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S. 1992 Effects of light intensity, light quality, and illumination cycle on astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 61-63. Strain(s): 144  DOI: 10.1016/0922-338X(92)90271-U Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S., Kurimura, Y., Tsuji, Y. 1997 Antioxidant role of astaxanthin in the green alga Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 48, 351-356. Strain(s): 144  DOI: 10.1007/s002530051 Kobayashi, M., Kakizono, T., Yamaguchi, K., Nishio, N., Nagai, S. 1992 Growth and asta-xanthin formation of Haematococcus pluvialis in heterotrophic and mixotrophic conditions. J. Ferment. Bioeng., 74, 17-20. Strain(s): 144  Kobayashi, M., Kurimura, Y., Kakizono, T., Nishio, N., Tsuji, Y. 1997 Morphological changes in the life cycle of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 84, 94-97. Keywords: astaxanthin; encystment; germination; Haematococcus pluvialis; life cycle; maturation Strain(s): 144  DOI: 10.1016/S0922-338X(97)82794-8 Kobayashi, M., Kurimura, Y., Sakamoto, Y., Tsuji, Y. 1997 Selective extraction of astaxanthin and chlorophyll from the green alga Haematococcus pluvialis. Biotechnol. Tech., 11, 657-660. Strain(s): 144  DOI: 10.1023/A:1018455209445 Kobayashi, M., Kurimura, Y., Tsuji, Y. 1997 Light-independent, astaxanthin production by the green microalga Haematococcus pluvialis under salt stress. Biotechnol. Lett., 19, 507-509. Strain(s): 144  DOI: 10.1023/A:1018372900649 Kobayashi, M., Okada, T. 2000 Protective role of astaxanthin against u.v.-B irradiation in the green alga Haematococcus pluvialis. Biotechnol. Lett., 22, 177-181. Keywords: antioxidant; astaxanthom; Haematococcus pluvialis oxidative stress; u.v.-B; Strain(s): 144  DOI: 10.1023/A:100564960983 Kobayashi, M., Todoroki, Y., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1998 Biological activities of abscisic acid analogs in the morphological change of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 85, 529-531. Keywords: abscisic acid; astaxanthin; carotenogenesis; drought stress; encystment; plant hormone; Haematococcus pluvialis Strain(s): 144  DOI: 10.1016/S0922-338X(98)80076-7 Kobayashi, T. Takahara, M., Miyagishima, S, Kuroiwa, H., Sasaki, N., Ohta, N., Kuroiwa, T. 2002 Detection and localization of a chloroplast-encoded HU-like protein that may organize chloroplast nucleoids. Plant Cell, 14, 1579-1589. Strain(s): 3377  PubMed: 12119376 DOI: 10.1105/tpc.002717 Kobayashi, Y., Kanesaki, Y., Tanaka, A., Kuroiwa, H., Kuroiwa, T., Tanaka, K. 2009 Tetrapyrrole signal as a cell-cycle coordinator from organelle to nuclear DNA replication in plant cells. Proc. Nati. Acad. Sci. U. S. A., 106, 803-807. Strain(s): 3377  PubMed: 19141634 DOI: 10.1073/pnas.0804270105 Kobayashi, Y., Takusagawa, M., Harada, N., Fukao, Y., Yamaoka, S., Kohchi, T., Hori, K., Ohta, H., Shikanai, T., Nishimura, Y. 2016 Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. Genome Biol. Evol., 8, 1-16. Keywords: chloroplast; nucleoid; evolution; endosymbiosis Strain(s): 2285  PubMed: 26608058 DOI: 10.1093/gbe/evv233 Kodani, S. 2002 Studies on antialgal compounds of algicidal bacteria. PhD thesis, University of Tokyo, Japan, 87 pp. Strain(s): 19  Kodani, S., Imoto, A., Mitsutani, A., Murakami, M. 2002 Isolation and identification of the antialgal compound, harmane (1-methyl-B-carboline), produced by the algicidal bacterium, Pseudomonas sp. K44-1. J. Appl. Phycol., 14, 109-114. Keywords: Algicidal bacteria; Antialgal compound; Cyanobacteria; Harmane; Pseudomonas sp.; Water bloom Strain(s): 19,  23,  102,  227,  299,  446,  506  DOI: 10.1023/A:1019533414018 Kodani, S., Ishida, K., Murakami, M. 1998 Aeruginosin 103-A, a thrombin inhibitor from the cyanobactrium Microcystis viridis. J. Nat. Prod., 61, 1046-1048. Strain(s): 103  PubMed: 9722497 DOI: 10.1021/np980106w Kodani, S., Ishida, K., Murakami, M. 1998 Dehydroradiosumin, a trypsin inhibitor from the cyanobacterium Anabaena cylindrica. J. Nat. Prod., 61, 854-856. Strain(s): 19  PubMed: 9644086 DOI: 10.1021/np980048e Kodani, S., Ishida, K., Murakami, M. 1999 Occurrence and identification of UDP-N-acetylmuramyl-pentapeptide from the cyanobacterium Anabaena cylindrica. FEMS Microbiol. Lett., 176, 321-325. Keywords: cyanobacterium; UDP-N-acetylmuramyl-pentapeptide; peptidoglycan Strain(s): 19  PubMed: 10427714 DOI: 10.1111/j.1574-6968.1999.tb13678.x Koeduka, T., Ishizaki, K., Mwenda, C. M., Hori, K., Sasaki-Sekimoto, Y., Ohta, H., Kohchi, T., Matsui, K. 2015 Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family. Planta, 242, 1175-1186. Keywords: Allene oxide synthase; Plant evolution; CYP74; Hydroperoxide lyase; C8 volatiles Strain(s): 2285  PubMed: 26105654 DOI: 10.1007/s00425-015-2355-8 Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 2 protoplast induction and regeneration of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 279-286. Strain(s): 685,  2163,  2189  Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 3 interspecific cell fusion of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 287-293. Strain(s): 685,  2163,  2189  Kohata, K. & Watanabe, M. 1984 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (II) - Growth of Heterosigma akashiwo, red tide flagellate, in Microcosm. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 111-121 (in Japanese with English summary). Strain(s): 6  Kohata, K. & Watanabe, M. 1986 Synchronous division and the pattern of diel vertical migration of Heterosigma akashiwo (Hada) Hada (Raphidophyceae) in a laboratory culture tank. J. Exp. Mar. Biol. Ecol., 100, 209-224. Keywords: cell division; culture tank; DCMU-induced fluorescence; Heterosigma akashiwo; vertical migration Strain(s): 6  DOI: 10.1016/0022-0981(86)90163-2 Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (V) - Growth and cell volume change of Heterosigma akashiwo, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 57-66 (in Japanese with English summary). Strain(s): 6  Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VI) - Diurnal changes of C/N ratio and distribution of chloroplast pigments in the culture of Chattonella antiqua, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 67-77 (in Japanese with English summary). Strain(s): 1  Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VII) - Growth and its mathematical model of Heterosigma akashiwo, a red tide flagellate, in light-limited synchronous cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 79-88 (in Japanese with English summary). Strain(s): 6  Kohata, K. & Watanabe, M. 1988 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Chattonella antiqua (Raphidophyceae). J. Phycol., 24, 58-66. Keywords: carotenoids; cellular carbon; Chattonella antiqua; chlorophyll; diel change; laboratory culture tank; light-dark cycles Strain(s): 1  DOI: 10.1111/j.1529-8817.1988.tb04456.x Kohata, K. & Watanabe, M. 1989 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Pyramimonas parkeae (Prasinophyceae). J. Phycol., 25, 377-385. Keywords: carotenoids; cellurar carbon; chlorophyll; diel change; laboratory culture tank; light-dark cycles; loroxanthin dodecenoate; Pyremimonas parkeae Strain(s): 254  DOI: 10.1111/j.1529-8817.1989.tb00134.x Kohata, K., Watanabe, M. M., Nakamura, Y., Watanabe, M. 1982 Growth and phosphate uptake kinetics in Olisthodiscus luteus: grown on synchronized batch cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 95-111 (in Japanese with English summary). Strain(s): 6  Kohata, K., Watanabe, M., Yamanaka, K. 1991 Highly sensitive determination of photosynthetic pigments in marine in situ samples by high-performance liquid chromatography. J. Chromatogr. A 558, 131-140. Strain(s): 6,  7,  254,  323,  353  DOI: 10.1016/0021-9673(91)80118-Z Koike, H., Shibata, M., Yasutomi, K., Kashino, Y., Satoh, K. 2000 Identification of photosystem I components from a glaucocystophyte, Cyanophora paradoxa: The PsaD protein has an N-terminal stretch homologous to higher plants. Photosynth. Res., 65, 207-217. Keywords: Cyanophora paradoxa; glaucocystophyte; light harvesting complex; photosystem I; PsaD; PsaL Strain(s): 547  DOI: 10.1023/A:1010734912776 Kojima, E. & Yamaguchi, Y. 1988 Photoproduction of hydrogen by adapted cells of Chlorella pyrenoidosa. J. Ferment. Technol., 66, 19-25. Strain(s): 685  DOI: 10.1016/0385-6380(88)90124-0 Kolisko, M., Silberman, J. D., Cepicka, I., Yubuki, N., Takishita, T., Yabuki, A., Leander, B. S., Inouye, I., Inagaki, Y., Roger, A., Simpson, A. G. B. 2010 A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environ. Microbiol., 12, 2700-2710. Strain(s): 1968  PubMed: 20482740 DOI: 10.1111/j.1462-2920.2010.02239.x Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.” Photosynth. Res., 130, 445-467. Keywords: Chlorophyll; Divinyl chlorophyll; Pheophytin; Photosynthesis; Prochlorococcus Strain(s): 2086,  2087,  2884,  3376  PubMed: 27334004 DOI: 10.1007/s11120-016-0283-5 Komor, E., Cho, B.-H., Kraus, M. 1988 The occurrence of the glucose-inducible transport systems for glucose, proline, and arginine in different species of Chlorella. Botanica Acta, 101, 321-326. Keywords: Amino acid transport; induction by glucose; Chlorella; classification Strain(s): 687,  2150  DOI: 10.1111/j.1438-8677.1988.tb00051.x Kondo, F., Ikai, Y., Oka, H., Ishikawa, N., Watanabe, M. F., Watanabe, M., Harada, K., Suzuki, M. 1992 Separation and identification of microcystins in cyanobacteria by frit-fast atom bombardment liquid chromatography / mass spectrometry. Toxicon, 30, 227-237. Strain(s): 1213  PubMed: 1529459 DOI: 10.1016/0041-0101(92)90865-3 Kondo, R. & Okamura, T. 2017 Growth and grazing kinetics of the facultative anaerobic nanoflagellate, Suigetsumonas clinomigrationis. Microbes Environ., 32, 80-83. Keywords: anaerobic flagellate; growth rate; ingestion rate; Lake Suigetsu Strain(s): 3647  PubMed: 28190796 DOI: 10.1264/jsme2.ME16113 Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M. 2000 Genetic typing of a bloom-forming cyanobacterial genus Microcystis in Japan using 16S rRNA gene sequence analysis. Plankton Biol. Ecol., 47, 1-6. Keywords: genetic typing; 16S rDNA; Microcystis; cyanobacteria; phylogenetic analysis Strain(s): 87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  104,  105,  106,  108,  109,  110,  111,  112,  298,  299,  604,  1055,  1061,  1068,  1076,  1090,  1091,  1105,  1122,  1142,  1164  Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M., Hata, Y. 1999 Rapid DNA extraction from a bloom-forming cyanobacterium. Microbes Environ., 14, 157-161. Keywords: DNA extraction; PCR; Microcystis; cyanobacteria Strain(s): 87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  104,  105,  106,  108,  109,  110,  111,  112,  298,  299,  604,  1055,  1061,  1068,  1076,  1090,  1091,  1105,  1122,  1142,  1164  DOI: 10.1264/jsme2.14.157 Kondo, R., Kagiya, G., Komura, M., Yuki, Y., Hiroishi, S., Watanabe, M. 2000 Molecular taxonomy of a bloom-forming cyanobacterial genus Microcystis. Bull. Plankton Soc. Japan, 47, 25-33 (in Japanese with English summary). Keywords: cyanobacteria; Microcystis; bacterial criteria; molecular analysis Strain(s): 6,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  104,  105,  106,  108,  109,  110,  111,  112,  298,  299,  604,  1055,  1061,  1068,  1076,  1090,  1091,  1105,  1122,  1142,  1164  Kondo, R., Kagiya, G., Yuki, Y., Hiroishi, S., Watanabe, M. 1998 Taxonomy of a bloom-forming cyanobacterial genus Microcystis. Nippon Suisan Gakkaishi, 64, 291-292 (in Japanese with English title). Strain(s): 87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  104,  105,  106,  107,  108,  109,  110,  111,  112,  298,  299,  604  Kondo, R., Komura, M., Hiroishi, S., Hata, Y. 1998 Detection and 16S rDNA sequence analysis of a bloom-forming cyanobacterial genus Microcystis. Fish. Sci., 64, 840-841. Keywords: Microcystis; 16S rDNA; PCR Strain(s): 107,  112  DOI: 10.2331/fishsci.64.840 Kondo, R., Yoshida, T., Yuki, Y., Hiroishi, S. 2000 DNA-DNA reassociation among a bloom-forming cyanobacterial genus, Microcystis. Int. J. Syst. Evol. Microbiol., 50, 767-770. Keywords: DNA hybridization; DNA G+C content; cyanobacteria; Microcystis Strain(s): 87,  89,  98,  102,  104,  111,  112,  298,  604  PubMed: 10758887 DOI: 10.1099/00207713-50-2-767 Kondo, S., Hori, K., Sasaki-Sekimoto, Y., Kobayashi, A., Kato, T., Yuno-Ohta, N., Nobusawa, T., Ohtaka, K., Shimojima, M., Ohta, H. 2016 Primitive extracellularlipid components on the surface of the charophytic alga Klebsormidium flaccidum and their possible biosynthetic pathways as deduced from the genome sequence. Front. Plant Sci., 7, 952 (article ID). Keywords: Klebsormidium flaccidum; Chlamydomonas reinhardtii; Arabidopsis thaliana; extracellular lipids; polyester backbone; wax; cuticle Strain(s): 2285  PubMed: 27446179 DOI: 10.3389/fpls.2016.00952 Kong, F., Yamasaki, T., Kurniasih, S. D., Hou, L., Li, X., Ivanova, N., Okada, S., Ohama, T. 2015 Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains. Biotech. Bioeng., 120, 239-245. Keywords: Transgene silencing; Position effect; Squalene synthase-like gene; Botryococcus braunii; Methyltransferase gene Strain(s): 2235  PubMed: 25660568 DOI: 10.1016/j.jbiosc.2015.01.005 Konno, R. & Wakabayashi, A. 1987 Effects of chemical substance on the growth of algae [Sôrui no zôsyoku ni oyobosu kagakubusshitsu no eikyô]. Tokyo-to Kankyô Kagaku Kenkyûjo Nenpô. 1987, 4 pp. (in Japanese). Strain(s): 35  Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193. Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum Strain(s): 16,  17,  223,  323,  324  PubMed: 18042429 DOI: 10.1016/j.protis.2007.09.004 Kookal, S. K., Nawkarkar, P., Gaur, N. A., Kumar, S. 2022 Bioremediation of ethanol wash by microalgae and generation of bioenergy feedstock. J. Appl. Phycol., 35, 183–194. Keywords: Biomass; Bioremediation; Melanoidin; Spent Wash; Ethanol distillery wastewater; Bioenergy; Circular Bioeconomy Strain(s): 2170  DOI: 10.1007/s10811-022-02866-0 Koskenniemi, K., Lyra, C., Rajaniemi-Wacklin, P., Jokela, J., Sivonen, K. 2007 Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea. Appl. Environ. Microbiol., 73, 2173-2179. Strain(s): 81,  89,  102  PubMed: 17277219 DOI: 10.1128/AEM.02746-06 Kotzabasis, K., Schuering, M., Senger, H. 1989 Occurrence of protochlorophyll and its phototransformation to chlorophyll in mutant C-2A' of Scenedesmus obliquus. Physiol. Plant., 75, 221-226. Keywords: green algae; phototransformation; protochlorophyllide; protochlorophyllide reductase; Scenedesmus obliquus Strain(s): 2280  DOI: 10.1111/j.1399-3054.1989.tb06172.x Koumura, Y., Suzuki, T., Yoshikawa, S., Watanabe, M., Iseki, M. 2004 The origin of photoactivated adenylyl cyclase (PAC), the Euglena blue-light receptor: phylogenetic analysis of orthologues of PAC subunits from several euglenoids and trypanosome-type adenylyl cyclases from Euglena gracilis. Photochem. Photobiol. Sci., 3, 580-586. Strain(s): 48,  381  PubMed: 5170488 DOI: 10.1039/b316075k Krausfeldt, L. E., Farmer, A. T., Castro, H. F., Boyer, G. L., Campagna, S. R., Wilhelm, S. W. 2020 Nitrogen flux into metabolites and microcystins changes in response to different nitrogen sources in Microcystis aeruginosa NIES‐843. Environ. Microbiol., 22, 2419-2431. Strain(s): 843  PubMed: 32338427 DOI: 10.1111/1462-2920.15032 Krienitz, L., Bock, C., Nozaki, H., Wolf, M. 2011 SSU rRNA gene phylogeny of morphospecies affiliated to the bioassay alga "Selenastrum capricornutum" recovered the polyphyletic origin of crescent-shaped Chlorophyta. J. Phycol., 47, 880-893. Keywords: Kirchneriella; Neocystis mucosa sp. nov..; Nephrochlamys; Raphidocelis; Rhombocystis; Selenastrum; SSU rRNA gene phylogeny; taxonomy; Tetranephris; ultrastructure Strain(s): 2708,  2709,  2710,  2711,  2712,  2713,  2714  PubMed: 27020023 DOI: 10.1111/j.1529-8817.2011.01010.x Krivina, E. S. & Temraleeva, A. D. 2020 Identification problems and cryptic diversity of Chlorella-clade microalgae (Chlorophyta). Microbiology, 89, 720-732. Keywords: microalgae; morphology; ecology; phylogeny; 18S−ITS1−5.8S−ITS2 fragments; polyphasic approach Strain(s): 2167,  2173,  4032,  4034  DOI: 10.1134/S0026261720060107 Krupnik, T., Kotabová, E., van Bezouwen, L. S., Mazur, R., Garstka, M., Nixon, P. J., Barber, J., Kaňa, R., Boekema, E. J., Kargul, J. 2013 A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae. J. Biol. Chem., 288, 23529-23542. Strain(s): 1332  DOI: 10.1074/jbc.M113.484659 Krupnik, T., Wasilewska, W., Drożak, A., Romanowska, E., Zienkiewicz, M. 2018 Application of chloroplast promoters of Cyanidioschyzon merolae for exogenous protein expression. Algae, 33, 351-358. Keywords: chloroplast promoters; chloroplast transformation; Cyanidioschyzon merolae Strain(s): 1332  DOI: 10.4490/algae.2018.33.12.5 Kuang, X., Peng, L., Chen, A., Xeng, Q., Luo, S., Shao, J. 2019 Enhancement mechanisms of copper(II) adsorption onto kaolinite by extracellular polymeric substances of Microcystis aeruginosa (cyanobacterium). Int. Biodeterior. Biodegrad., 138, 8-14. Keywords: Microcystis aeruginosa; Extracellular polymeric substances; Copper(II); Adsorption kinetics; Adsorption isotherm Strain(s): 843  DOI: 10.1016/j.ibiod.2018.12.009 Kubo, T., Abe, J.,  Saito, T., Matsuda, Y. 2002 Genealogical relationships among laboratory strains of Chlamydomonas reinhardtii as inferred from matrix metalloprotease genes. Curr. Genet., 41, 115-122. Keywords: Chlamydomonas reinhardtii; Chlamydomonas smithii; matrix metalloprotease genes; molecular phylogeny Strain(s): 2235  PubMed: 12073093 DOI: 10.1007/s00294-002-0284-0 Kubo, T., Kato, N., Hosoya, K., Kaya, K. 2008 Effective determination method for a cyanobacterial neurotoxin, β-N-methylamino-L-alanine. Toxicon, 51, 1264-1268. Keywords: Cyanobacteria; Neurotoxin; BMAA; LC–ESI-MS; HILIC; SIM Strain(s): 88  PubMed: 18407310 DOI: 10.1016/j.toxicon.2008.02.015 Kubo, T., Saito, T., Fukuzawa, H., Matsuda, Y. 2001 Two tandemly-located matrix metalloprotease genes with different expression patterns in the Chlamydomonas sexual cell cycle. Curr. Genet., 40, 136-143. Keywords: cell wall degradation; Chlamydomonas reinhardtii; gametolysin; zygote-specific gene Strain(s): 2235  PubMed: 11680823 DOI: 10.1007/s002940100239 Kuchitsu, K., Oh-hama, T., Tsuzuki, M., Miyachi, S. 1987 Detection and characterization of acidic compartments (vacuoles) in Chlorella vulgaris 11h cells by 31P-in vivo NMR spectroscopy and cytochemical techniques. Arch. Mikrobiol., 148, 83-87. Strain(s): 2160  Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Changes of starch localization within the chloroplast induced by changes in CO2 concentration during growth of Chlamydomonas reinhardtii. Independent regulation of pyrenoid starch and stroma starch. Plant Cell Physiol., 29, 1269-1278. Keywords: Chlamydomonas (Chlorophyta); chloroplast; CO2 concentration; pyrenoid; starch; stroma Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a077635 Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Characterization of the pyrenoid isolated from unicellular green alga Chlamydomonas reinhardtii. Particulate form of RuBisCO protein. Protoplasma, 144, 17-24. Keywords: Chlamydomonas; pyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO); stroma Strain(s): 2235  DOI: 10.1007/BF01320276 Kumagai, M., Takamura, Y., Yagi, O., Sudo, R. 1986 Interactions between Microcystis aeruginosa and Moraxella nonliquefaciens. Jpn. J. Limnol., 47, 219-228 (in Japanese with English summary). Keywords: blue-green algae; Microcystis; interaction Strain(s): 604  Kumar, S., Kumar, R., Diksha, Kumari, A., Panwar, A. 2022 Astaxanthin: A super antioxidant from microalgae and its therapeutic potential J. Basic Microbiol., 62, 1064-1082. Keywords: biological activities; cultivation system, biorefining proces Strain(s): 144  PubMed: 34817092 DOI: 10.1002/jobm.202100391 Kumari, S., Kumar, V., Kothari, R., Kumar, P. 2022 Experimental and optimization studies on phycoremediation of dairy wastewater and biomass production efficiency of Chlorella vulgaris isolated from Ganga River, Haridwar, India. Environ. Sci. Pollut. Res., 29, 74643–74654. Keywords: Bioremediation; Environmental restoration; Freshwater algae; Industrial pollution; Response surface methodology; Wastewater treatment Strain(s): 227  PubMed: 35639322 DOI: 10.1007/s11356-022-21069-1 Kumazaki, S., Akari, M., Hasegawa, M. 2013 Transformation of thylakoid membranes during differentiation from vegetative cell into heterocyst visualized by microscopic spectral imaging. Plant Physiol., 161, 1321-1333. Strain(s): 2095  PubMed: 23274239 DOI: 10.1104/pp.112.206680 Kume, N. & Katoh, T. 1982 Dissociation kinetics of Anabaena phycobilisomes. Plant Cell Physiol., 23, 803-812. Keywords: Anabaena variabilis; blue-green alga; dissociation kinetics; molecular assembly; phycobiliprotein; phycobilisome Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a076414 Kume, N., Isono, T., Katoh, T. 1982 Stability of cyanobacterial phycobilisomes in reference to their concentration. Photobiochem. Photobiophys., 4, 25-37. Strain(s): 2093  Zzzbe 2022 Chapter 2 - Specialized metabolites from cyanobacteria and their biological activities. In The Pharmacological Potential of Cyanobacteria, Eds. by Lopes, G., Silva, M., Vasconcelos, V., Academic press pp. 21-54. Keywords: Kumla, D., Sousa, M. E., Vasconcelos, V., Kijjoa, A. Strain(s): 88  DOI: 10.1016/B978-0-12-821491-6.00002-8 Kuno, S., Yoshida, T., Kamikawa, R., Hosoda, N., Sako, Y. 2010 The distribution of a phage-related insertion sequence element in the cyanobacterium, Microcystis aeruginosa. Microbes Environ., 25, 295-301. Keywords: cyanobacteria; Microcystis; cyanophage; insertion sequence; horizontal gene transfer Strain(s): 90,  91,  98,  99,  101,  102,  112,  298,  604,  843,  1058,  1067,  1070,  1086,  1098,  1105  DOI: 10.1264/jsme2.ME10125 Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol., 78, 5353-5360. Strain(s): 87,  102,  298  PubMed: 22636003 DOI: 10.1128/AEM.00626-12 Kunugi, M., Matsumoto, M., Kondo, K. 2010 Effect of culture conditions on production of useful materials by Haematococcus pluvialis. Bull. Soc. Sea Water Sci., Jpn, 64, 297-304 (in Japanese with English summary). Keywords: biomass; microalgae; carbon dioxide; useful material production Strain(s): 144  Kunugi, M., Satoh. S., Ihara. K., Shibata. K., Yamagishi. Y., Kogame. K., Obokata. J., Takabayashi. A., Tanaka. A. 2016 Evolution of green plants accompanied changes in light-harvesting systems. Plant Cell Physiol., 57, 1231-1243. Keywords: Evolution; Green algae; Land plants; Light adaptation; Photosystem Strain(s): 254,  1419,  2541,  2582  PubMed: 27057002 DOI: 10.1093/pcp/pcw071 Kuramoto, T., Iwamoto, K., Izumi, M., Kirihata, M., Yoshizako, F. 1999 Asymmetric reduction of ethyl 2-methyl 3-oxobutanoate by Chlorella. Biosci. Biotechnol. Biochem., 63, 598-601. Keywords: Chlorella; asymmetric reduction; ethyl 2-methyl 3-oxobutanoate; (2S, 3S)-ethyl 2-methyl 3-hydroxybutanoate; (2S, 3R)-ethyl 2-methyl 3-hydroxybutanoate Strain(s): 226,  227  PubMed: 10227152 DOI: 10.1271/bbb.63.598 Kurita, T., Iwai, M., Moroi, K., Okazaki, K., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T. 2022 Genome editing with removable TALEN vectors harboring a yeast centromere and autonomous replication sequence in oleaginous microalga. Sci Rep, 12, 2480 (article ID). Strain(s): 2145  PubMed: 35169205 DOI: 10.1038/s41598-022-06495-y Kurita, T., Moroi, K., Iwai, M., Okazaki, K., Shimizu, S., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T. 2020 Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES‐2145. Genes Cells, 25, 695-702. Strain(s): 2145  PubMed: 32888368 DOI: 10.1111/gtc.12805 Kuroda, A., Nakashima, T., Yamaguchi, K., Oda, T. 2005 Isolation and characterization of light-dependent hemolytic cytotoxin fromharmful red tide phytoplankton Chattonella marina. Comp. Biochem. Physiol. C-Pharmacol. Toxicol. Endocrinol., 141, 297-305. Keywords: Red tide; Phytoplankton; Raphidophycean flagellate; Chattonella marina; Hemolysin; Photosensitizer; Pheophorbide a; Cytotoxin; Photodynamic therapy Strain(s): 6,  15  PubMed: 16098818 DOI: 10.1016/j.cca.2005.07.009 Kuroda, M., Horino, T., Inoue, D., Morikawa, M., Ike, M. 2018 Biomass production and nutrient removal through cultivation of Euglena gracilis in domestic wastewater. Jpn. J. Water Treat. Biol., 54, 105-113. Keywords: Euglena gracilis; biomass production; domestic wastewater; nutrient removal Strain(s): 48  DOI: 10.2521/jswtb.54.105 Kuroiwa, T. 1998 The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids. Bioessays, 20, 344-354. Strain(s): 3377  DOI: 3.0.CO;2-2" target="_blank">10.1002/(SICI)1521-1878(199804)20:43.0.CO;2-2 Kuroiwa, T., Kuroiwa, H., Sakai, A., Takahashi, H., Toda, K., Itoh, R. 1998 The division apparatus of plastids and mitochondria. Int. Rev. Cytol., 181, 1-41. Keywords: Cytokinesis; Organellokinesis; Organelle division; Mitochondrial division; Plastid division; FtsZ; Contractile ring; Cell division Strain(s): 3377  DOI: 10.1016/S0074-7696(08)60415-5 Kuroiwa, T., Ohnuma, M., Imoto, Y., Misumi, O., Nagata, N., Miyakawa, I., Fujishima, M., Yagisawa, F., Kuroiwa, H. 2016 Genome size of the ultrasmall unicellular freshwater green alga, Medakamo hakoo 311, as determined by staining with 4′,6-diamidino-2-phenylindole after microwave oven treatments: II. Comparison with Cyanidioschyzon merolae, Saccharomyces cerevisiae (n, 2n), and Chlorella variabilis. Cytologia, 81, 69-76. Keywords: Ultrasmall genome size; Medakamo hakoo; Saccharyomyces cerevisiae; Chlorella variabilis; DAPI staining; Microwave oven Strain(s): 3377,  4000  DOI: 10.1508/cytologia.81.69 Kuroiwa, T., Ohnuma, M., Nozaki, H., Imoto, Y., Misumi, O., Kuroiwa, H. 2015 Cytological evidence of cell-nuclear genome size of a new ultra-small unicellular freshwater green alga, “Medakamo hakoo” strain M-hakoo 311 I. Comparison with Cyanidioschyzon merolae and Ostreococcus tauri. Cytologia, 80, 143-150. Keywords: Ultra-small alga; Chlorophyte M. hakoo; Cyanidioschyzon merolae; Ostreococcus tauri; Genome size; Cytochemistry Strain(s): 2673,  3377,  4000  DOI: 10.1508/cytologia.80.143 Kuroiwa, T., Suzuki, T., Ogawa, K., Kawano, S. 1981 The chloroplast nucleus: Distribution, number, size and shape, and a model for the multiplication of the chloroplast genome during chloroplast development. Plant Cell Physiol., 22, 381-396. Keywords: chloroplast nuclei; classification (chloroplast); development (Chloroplast); division cycle (chloroplast) Strain(s): 47,  2572  DOI: 10.1093/oxfordjournals.pcp.a076181 Kuroiwa, Y., Al-Maamari, R. S., Tasaki, M., Okamura, K., Sueyoshi, M., Nakashima, A., Yoshida, E., Suzuki, K. 2014 Spirulina subsalsa var. salina var. nov.: Thermo-halotolerant cyanobacteria accumulating two kinds of compatible solute, originated from the Sultanate of Oman. J. Environ. Biotechnol., 14, 43-56. Keywords: Spirulina subsalsa var. salina var. nov.; Halospirulina; halotolerant; glycine betamine; O-α-D-glucopyranosyl-(1→2)-glycerole Strain(s): 3373  Kushibiki, A., Yokoyama, A., Iwataki, M., Yokoyama, J., West, J. A., Hara, Y. 2012 New unicellular red alga, Bulboplastis apyrenoidosa gen. et sp. nov. (Rhodellophyceae, Rhodophyta) from the mangroves of Japan: Phylogenetic and ultrastructural observations. Phycol. Res., 60, 114-122. Keywords: Bulboplastis apyrenoidosa; chloroplast; Golgi body; mannitol; nucleus-associated organelles; small subunit rDNA; ultrastructure; unicellular red alga Strain(s): 2742  DOI: 10.1111/j.1440-1835.2012.00643.x Kusui, T., Itatsu, Y., Jin, J. 2017 Whole effluent toxicity assessment of industrial effluents. In Toxicity and biodegradation testing, Eds. by Bidoia, E. D. & Montagnolli, R. N., Humana Press, New York, NY, pp. 331-347. Strain(s): 35  DOI: 10.1007/978-1-4939-7425-2_17 Kusumi, T., Ooi, T., Watanabe, M. M. Takahashi, H., Kakisawa, H. 1987 Cyanoviridin RR, a toxin from the cyanobacterium (blue-green alga) Microcystis viridis. Tetrahedron Letters, 28, 4695-4698. Strain(s): 102  DOI: 10.1016/S0040-4039(00)96600-0 Kusumi, T., Takata, Y., Itatsu, Y., Zha, J. 2014 Whole effluent toxicity assessment of industrial effluents in Toyama, Japan with a battery of short-term chronic bioassays. J. Water Environ. Technol., 12, 55-63. Keywords: aqquatic organism; ecotoxic effect; industrial effluent; whole effluent toxicity (WET) Strain(s): 35  DOI: 10.2965/jwet.2014.55 Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N. 2020 Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean. Microbiol. Resour. Ann.., 9, e00367-20 (article ID). Strain(s): 2565  PubMed: 32817146 DOI: 10.1128/MRA.00367-20 Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A. 2018 Bolidophyceae, a sister picoplanktonic group of diatoms – a review. Front. Mar. Sci., 5, 370 (article ID). Keywords: bolidophyceae; parmales; diatoms; genetic diversity; mitosis; geographical distribution; seasonal dynamics and silicification Strain(s): 2565,  2682,  3369,  3370,  3371,  3699,  3700,  3701  DOI: 10.3389/fmars.2018.00370 Kwak, H. S., Kim, J. Y. H., Sim, S. J. 2015 A microreactor system for cultivation of Haematococcus pluvialis and astaxanthin production. J. Nanosci. Nanotechnol., 15, 1618-1623. Keywords: Astaxanthin; Haematococcus pluvialis; Microfluidic Devices; Nile Red; PDMS Strain(s): 144  PubMed: 26353702 DOI: 10.1166/jnn.2015.9321 Lababpour, A., Hada, K., Shimahara, K., Katsuda, T., Katoh, S. 2004 Effects of nutrient supply methods and illumination with blue light emitting diodes (LEDs) on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 98, 452-456. Keywords: astaxanthin; Haematococcus pluvialis; blue light emitting diode (LED); nutrient supply Strain(s): 144  PubMed: 16233735 DOI: 10.1016/S1389-1723(05)00311-7 Lababpour, A., Shimahara, K., Hada, K., Kyoui, Y., Katsuda, T., Katoh, S. 2005 Fed-batch culture under illumination with blue light emitting diodes (LEDs) for astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 100, 339-342. Keywords: astaxanthin; Haematococcus pluvialis; fed-batch culture; blue light emitting diode (LED) Strain(s): 144  PubMed: 16243287 DOI: 10.1263/jbb.100.339 Laflamme, M., Lee, R. W. 2003 Mitochondrial genome conformation among CW-group Chlorophycean algae. J. Phycol., 39, 213-220. Keywords: Chlamydomonas; Chlorophyceae; gel electrophoresis; mitochondrial DNA conformation; phylogeny Strain(s): 296,  484  DOI: 10.1046/j.1529-8817.2003.02045.x Lang, I., Hodac, L., Friedl, T., Feussner, I. 2011 Fatty acid profiles and their distribution patterns in microalgae: a comprehensive analysis of more than 2000 strains from the SAG culture collection. BMC Plant Biol., 11, 124 (article ID). Keywords: Fatty Acid Profile; Spirulina; Fatty Acid Pattern; Multiple Strain; Canonical Variate Analysis Strain(s): 4282  PubMed: 21896160 DOI: 10.1186/1471-2229-11-124 Langer, G., Nehrke, G., Probert, I., Ly, J., Ziveri, P. 2009 Strain-specific responses of Emiliania huxleyi to change seawater carbonate chemistry. Biogeosciences, 6, 2637-2646. Strain(s): 2697  DOI: 10.5194/bg-6-2637-2009 Lapsongpon, T., Leungprasert, S., Yoshimura, C. 2017 Pre-chlorination contact time and the removal and control of Microcystis aeroginosa in coagulation. 7th International Conference on Environment and Industrial Innovation, 012011 (article ID). Strain(s): 843  DOI: 10.1088/1755-1315/67/1/012011 Le Gall, F., Rigaut-Jalabert, F., Marie, D., Garczareck, L., Viprey, M., Godet, A., Vaulot, D. 2008 Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences, 5, 203-214. Strain(s): 2582  Le, V. V., Ko, S.-R.; Kang, M., Lee, S.-A., Oh, H.-M., Ahn, C.-Y. 2022 Algicide capacity of Paucibacter aquatile DH15 on Microcystis aeruginosa by attachment and non-attachment effects. Environmental Pollution, 302, 119079 (article ID). Keywords: Cyanobacterial blooms; Microcystin; Mitigation; Biodegradation; Biological alternative treatment Strain(s): 843  PubMed: 35245623 DOI: 10.1016/j.envpol.2022.119079 Leblond, J. D., Hollingsworth, B. E., Ayoub, D., Mckinnon, M. B., Myers, C. S., Busari, T. J., Sabir, K. 2023 Galactolipid composition of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae): presence of hexadecatetraenoic acid (16:4(n-3))-containing monogalactosyldiacylglycerol as the predominant galactolipid and chemotaxonomic closeness to Karenia mikimotoi as the only other known Kareniacean producer of this fatty acid. Phycol. Res., 71, 135-139. Strain(s): 4329  DOI: 10.1111/pre.12518 Leblond, J. D., Sabir, K., Graeff, J. E. 2022 Galactolipid composition of Gertia stigmatica (Dinophyceae), an atypical member of the Kareniaceae with a peridinincontaining, non-haptophyte-derived plastid. Phycol. Res., 70, 137-141. Keywords: hloroplast; dinoflagellate; Dinophyceae; Gertia; Kareniaceae; lipid Strain(s): 4330  DOI: 10.1111/pre.12488 Lebre P. H. & Cowan D. A 2019 Genomics of alkaliphiles. In Alkaliphiles in Biotechnology, Eds. by Mamo G., Mattiasson B., Springer, Cham, pp. 135-155. Strain(s): 39  DOI: 10.1007/10_2018_83 Lebret, K., Tesson, S. V. M., Kritzberg, E. S., Tomas, C., Rengefors, K. 2015 Phylogeography of the freshwater raphidophyte Gonyostomum semen confirms a recent expansion in northern Europe by a single haplotype. J. Phycol., 51, 768-781. Keywords: Gonyostomum semen; ITS; LSU; phylogeography; raphidophyte SSU Strain(s): 1009,  1380,  1808  PubMed: 26986795 DOI: 10.1111/jpy.12317 Lee, A. K., Wei, J. H., Welander, P. V. 2023 De novo cholesterol biosynthesis in bacteria. Nat. Commun., 14, 2904 (article ID). Strain(s): 4105  PubMed: 37217541 DOI: 10.1038/s41467-023-38638-8 Lee, C., Ahn, J.-W., Kim, J.-B., Kim, J. Y., Choi, Y.-E. 2018 Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength. World J. Microbiol. Biotechnol., 34, 96 (article ID). Keywords: Gene expression; Carotenoid biosynthesis; Differentially expressed genes; Microalgae; LED wavelength Strain(s): 144  PubMed: 29916185 DOI: 10.1007/s11274-018-2459-y Lee, C., Jeon, M. S., Vo, T-T., Park, C., Choi, J-S., Kwon, J., Roh, S. W., Choi, Y-E. 2018 Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria. J. Appl. Phycol., 30 1795–1806. Keywords: Algal bloom; Cyanobacterium; Bacterial isolation; Microcystis; Biological control; Microcystin degradation Strain(s): 144  DOI: 10.1007/s10811-018-1403-8 Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E. 2019 Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage. Algal Res., 41, 101547. Keywords: Unicellular microalgae; Haematococcus spp.; Symbiotic bacteria; Achromobactersp.; Growth promotion; Auxin Strain(s): 144  DOI: 10.1016/j.algal.2019.101547 Lee, H. & Ban, S. 1999 Effect of crowding on growth and reproduction of Simocephalus vetulus O.F.Muller. Hydrobiologia, 391, 135-145. Keywords: flow-through technique; crowding effect; growth and reproduction; neonate size; reproductive investments; Simocephalus vetulus Strain(s): 282  DOI: 10.1023/A:1003529109779 Lee, H.-W., Ban, S., Ando, Y., Ota, T., Ikeda, T. 1999 Deleterious effect of diatom diets on egg production and hatching success in the marine copepod Pseudocalanus newmani. Plankton Biol. Ecol., 46, 104-112. Keywords: diatom effect; copepod; Pseudocalanus newmani; clutch size; hatching success Strain(s): 7  Lee, H-W., Ban, S., Ikeda, T., Matsuishi, T. 2003 Effect of temperature on development, growth and reproduction in the marine copepod Pseudocalanus newmani at satiating food condition. J. Plankton Res., 25, 261-271. Strain(s): 7  DOI: 10.1093/plankt/25.3.261 Lee, J. E., Yu, M. N., Yu, S., Byeon, M. 2022 Occurrence and phylogenetic analysis of Pseudanabaena sp. producing 2-methylisoborneol in drinking water source of South Korea. Environ. Microbiol. Rep., 14, 197-202. Strain(s): 512  PubMed: 34837342 DOI: 10.1111/1758-2229.13031 Lee, J.-Y. & Jeong, S.-Y. 2018 Characteristics and effects of algal-lytic bacterium for control of fresh water microalgae. J. Eng. Appl. Sci., 13, 2803-2808. Keywords: Algal blooms; algal-lytic activity; fresh microalgae; Microcystis aeruginosa; Pseudomonas sp. JS-9; substance Strain(s): 298  Lee, K. H., Chun, Y., Lee, J. H., Park, C., Yoo, H. Y., Kwak, H. S. 2022 Improved productivity of astaxanthin from photosensitive Haematococcus pluvialis using phototaxis technology. Mar. Drugs, 20, (article ID). Keywords: Haematococcus pluvialis; astaxanthin; photosynthetic efficiency; microfluidics; photobioreactor Strain(s): 144  PubMed: 35447893 DOI: 10.3390/md20040220 Lee, K.-Y., Park, J.-H., Park, B.-S. 1996 CO2 fixation and SCP production using blue green algae. Theories and Applications of Chem. Eng. (Korea), 2, 489-492 (in Korean with English title). Strain(s): 19,  39,  46  Lee, N., Narasimhan, A. L., Moon, G., Kim, Y.-E., Park, M., Kim, B., Mahadi, R., Chung, S., Oh, Y.-K. 2022 Room-temperature cell disruption and astaxanthin recovery from Haematococcus lacustris cysts using ultrathin α-quartz nanoplates and ionic liquids. Appl. Sci.-Basel, 12, 2210 (article ID). Keywords: microalgae; Haematococcus lacustris; astaxanthin; ionic liquid; nanoplate; cell disruption; room-temperature extraction Strain(s): 144  DOI: 10.3390/app12042210 Lee, S, Kato, J, Takiguchi, N. Kuroda, A., Ikeda, T., Mitsutani, A., Ohtake, H. 2000 Involvement of an extracellular protease in algicidal activity of the marine bacterium Pseudoalteromonas sp. strain A28. Appl. Environ. Microbiol., 66, 4334-4339. Strain(s): 324  PubMed: 11010878 DOI: 10.1128/AEM.66.10.4334-4339.2000 Lee, S., Thio, S. K., Park, S.-Y., Bae, S. 2019 An automated 3D-printed smartphone platform integrated withoptoelectrowetting (OEW) microfluidic chip for on-site monitoring of viablealgae in water. Harmful Algae, 88, 101638 (article ID). Keywords: Algae quantification; In-situ assessment; Viable algae; 3D-printed smartphone platform; Optoelectorwetting Strain(s): 843,  2463  PubMed: 31582154 DOI: 10.1016/j.hal.2019.101638 Lee, S.-A., Kim, M., Esterhuizen, M., Le, V. V., Kang, M., o, S.-R., Oh, H.-M., Kim, Y. J., Ahn, C.-Y. 2022 An acceleration of carotenoid production and growth of Haematococcus lacustris induced by host-microbiota network interaction. Microbiol. Res., 262, 127097 (article ID). Keywords: Haematococcus lacustris; Astaxanthin; NGS; Phycosphere Strain(s): 144  PubMed: 35751943 DOI: 10.1016/j.micres.2022.127097 Lee, S.-A., Lim, W.-H., Ko, S.-R., Kim, B., Oh, H.-M., Ahn, C.-Y. 2022 Lifespan extension and anti-oxidant effects of carotenoid pigments in Caenorhabditis elegans. Bioresour. Technol. Reports, 17, 100962 (article ID). Keywords: Haematococcus lacustris; Carotenoids; Caenorhabditis elegans; Lifespan; Antioxidation Strain(s): 144  DOI: 10.1016/j.biteb.2022.100962 Lee, T. Y., Praveenkumar, R., Oh, Y. K. Lee, K., Kim, S. H. 2016 Alginate microgels created by selective coalescence between core drops paired with an ultrathin shell. J. Mater. Chem. B, 4, 3232-3238. Strain(s): 144  DOI: 10.1039/c6tb00580b Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1994 In vivo fluorometric method for early detection of cyanobacterial waterblooms. J. Appl. Phycol., 6, 489-495. Keywords: cyanobacteria; waterblooms; in vivo fluorescence; monitoring; Microcystis aeruginosa Strain(s): 298,  512  Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1995 Quantitative determination of cyanobacteria in mixed phytoplankton assemblages by an in vivo fluorimetric method. Anal. Chim. Acta, 302, 81-87. Keywords: cyanobacteria; quantitative estimation; phycocyanin; waterblooms; Microcystis aeruginosa Strain(s): 298,  512  DOI: 10.1016/0003-2670(94)00425-L Lee, T.-Y., Gotoh, N., Niki, E., Yokoyama, K., Tsuzuki, M., Takeuchi, T., Karube, I. 1995 Chemilluminescence detection of red tide phytoplankton Chattonella marina. Anal. Chem., 67, 225-228. Strain(s): 2138  Lee, Y.-K. & Soh, C.-W. 1991 Accumulation of astaxanthin in Haematococcus lacustris (Chlorophyta). J. Phycol., 27, 575-577. Keywords: astaxanthin; chemostat cultures; chlorophyta; Haematococcus lacustris; photon flux density; specific growth rate Strain(s): 2264  DOI: 10.1111/j.0022-3646.1991.00575.x Lee, Y.-K. & Tan, H.-M. 1988 Interphylum protoplast fusion and genetic recombination of the algae Porphyridium cruentum and Dunaliella spp. J. Gen. Microbiol., 134, 635-641. Strain(s): 2257  DOI: 10.1099/00221287-134-3-635 Lee, Y.-K., Ahn, C.-Y., Kim, H.-S., Oh, H.-M. 2010 Cyanobactericidal effect of Rhodococcus sp. isolated from eutrophic lake on Microcystis sp. Biotechnol. Lett., 32, 1673-1678. Keywords: Algicide; Bloom; Cyanobacteria; Microcystis; Rhodococcus Strain(s): 23,  843  PubMed: 20640876 DOI: 10.1007/s10529-010-0350-5 Lei, C., Kobayashi, H., Wu, Y., Li, M., Isozaki, A., Yasumoto, A., Mikami, H., Ito, T., Nitta, N., Sugimura, T., Yamada, M., Yatomi, Y., Di Carlo, D., Ozeki, Y., Goda, K. 2018 High-throughput imaging flow cytometry by optofluidic time-stretch microscopy. Nat. Protoc., 13, 1603-1631. Strain(s): 48  PubMed: 29976951 DOI: 10.1038/s41596-018-0008-7 Leikoski, N., Fewer, D. P., Jokela, J., Alakoski, P., Wahlsten, M., Sivonen, K. 2012 Analysis of an inactive cyanobactin biosynthetic gene cluster leads to discovery of new natural products from strains of the genus Microcystis. PLoS One, 7, e43002 (article ID). Strain(s): 843  PubMed: 22952627 DOI: 10.1371/journal.pone.0043002 Lemieux, C., Otis, C., Turmel, M. 2000 Ancestral chloroplast in Mesostigma viride reveals an early branch of green plant evolution. Nature, 403, 649-652. Strain(s): 296  PubMed: 10688199 DOI: 10.1038/35001059 Lemieux, C., Otis, C.,Turmel, M. 2014 Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol. Biol., 14, 211 (article ID). Keywords: Chlorophyta; Trebouxiophyceae; Plastid genome; Phylogenomics Strain(s): 1824,  2166  PubMed: 25270575 DOI: 10.1186/s12862-014-0211-2 Lemieux, C., Otis, C.,Turmel, M. 2014 Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species. BMC Evol. Biol., 14, 857 (article ID). Keywords: Viridiplantae; Prasinophytes; Prasinococcales; Picocystis; Picoplanktonic algae; Nephroselmis; Plastid genome; Phylogenomics; Genome reduction; trans-spliced group II intron Strain(s): 252  PubMed: 25281016 DOI: 10.1186/1471-2164-15-857 Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID). Keywords: Chlorophyceae; Chlamydomonadales; Golenkiniaceae; Treubarinia, Jenufa genus; Plastid genome; Flagellar apparatus Strain(s): 257,  425  PubMed: 26620802 DOI: 10.1186/s12862-015-0544-5 Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D. 2011 Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiol. Ecol., 76, 513-523. Keywords: whole-genome amplification; photosynthetic; microbial eukaryote; flow cytometry sorting; rRNA genes Strain(s): 252,  1411  PubMed: 21348885 DOI: 10.1111/j.1574-6941.2011.01072.x Lerche, K. & Hallmann, A. 2009 Stable nuclear transformation of Gonium pectorale. BMC Biotechnol., 9, 64 (article ID). 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W., Pereira, P. 2003 Morphological and 16S rRNA gene evidence for reclassification of the paralytic shellfish toxin producing Aphanizomenon flos-aquae LMECYA 31 as Aphanizomenon issatschenkoi (Cyanophyceae). J. Phycol., 39, 814-818. Keywords: Ahanizomenon issatschenkoi; cyanotoxin; 16S rDNA; morphology; gene sequences; taxonomy Strain(s): 1728  DOI: 10.1046/j.1529-8817.2003.02199.x Li, R., Carmichael, W. W., Watanabe, M. M. 2000 Taxonomic re-evaluation of Aphanizomenon flos-aquae NH-5 based on morphology and 16S rRNA gene sequences. Hydrobiologia, 438, 99-105. Keywords: Aphanizomenon; Cyanobacteria; 16S rRNA; morphology; sequences; taxonomy Strain(s): 1728  DOI: 10.1023/A:1004166029866 Li, R., Watanabe, M., Watanabe, M. M. 2000 Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains. Hydrobiologia, 438, 117-138. Keywords: Anabaena; cyanobacteria; identification; morphology; planktic; taxonomy Strain(s): 40,  73,  74,  76,  77,  78,  79,  80,  263,  1652,  1653,  1667,  1672,  1673,  1677,  1695  DOI: 10.1023/A:1004170230774 Li, R., Yokota, A., Sugiyama, J., Watanabe, M., Hiroki, M., Watanabe, M. M. 1998 Chemotaxonomy of planktonic cyanobacteria based on non-polar and 3-hydroxy fatty acid composition. Phycol. Res., 46, 21-28. Keywords: 3-hydroxy fatty acids; chemotaxonomy; fatty acid; non-polar fatty acids; planktonic cyanobacteria Strain(s): 27,  40,  44,  76,  78,  79,  80,  81,  87,  89,  98,  102,  104,  111,  112,  204,  205,  207,  298,  604,  810,  821,  825,  826  DOI: 10.1111/j.1440-1835.1998.tb00093.x Li, WW., Xia, MS., Li, WB., Liu, LW., Yang, Y., Li, JH. 2018 Characterization of a putative S-layer protein of a colonial Microcystis strain. Curr. Microbiol., 75, 173-178. 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Keywords: Cyanobacteria; Phycocyanin; Thermophile; Thermostability; Phycobilisome; Natural pigment Strain(s): 2133,  2134  DOI: 10.1016/j.algal.2018.08.037 Lin, S., Wu, Z., Yu, G., Zhu, M., Yu, B., Li, R. 2010 Genetic diversity and molecular phylogeny of Planktothrix (Oscillatoriales, cyanobacteria) strains from China. Harmful Algae, 9, 87-97. Keywords: diversity; phylogeny; Planktothrix; 16S rRNA; rbcLX; rpoC1; taxonomy; water bloom Strain(s): 928,  1266  DOI: 10.1016/j.hal.2009.08.004 Lin, W., Zhao, D., Luo, J. 2018 Distribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth. J. Appl. Phycol., 30, 839-850. Keywords: Alkaline; phosphatase; Cyanobacteria; Dissolved organic phosphorus; Distribution Strain(s): 30,  39,  81,  2130,  2549,  3756  DOI: 10.1007/s10811-017-1267-3 Lin, Y., Ge, J., Zhang, Y., Ling, H., Yan, X., Ping, W. 2019 Monoraphidium sp. HDMA-20 is a new potential source of α-linolenic acid and eicosatetraenoic acid. Lipids Health Dis., 18, 56 (article ID). Keywords: PUFA; ALA; ETA; Microalgae; Monoraphidium Strain(s): 244  PubMed: 30832728 DOI: 10.1186/s12944-019-0996-5 Lindley, M., Gala de Pablo, J., Peterson, W., Isozaki, A., Hiramatsu, K., Goda, K. 2022 High-throughput raman-activated cell sorting in the fingerprint region. Adv. Mater. Technol., 7, 2101567 (article ID). Strain(s): 48,  2175,  4141  DOI: 10.1002/admt.202101567 Lindsey, C. R., Rosenzweing, F., Herron, M. D. 2021 Phylotranscriptomics points to multiple independent origins of multicellularity and cellular differentiation in the volvocine algae. BMC Biol., 19, 182 (article ID). Keywords: Phylotranscriptomics; Volvocine algae; Green algae; Phylogeny; Multicellularity Strain(s): 418,  456,  458,  460,  564,  566,  568,  572,  653,  654,  717,  719,  720,  725,  736,  737,  851,  856,  890,  2863,  3383  DOI: 10.1101/2021.03.16.435725 Linka, M., Jamai, A., Weber, A. P. M. 2008 Functional characterization of the plastidic phosphate translocator gene family from the thermo-acidophilic red alga Galdieria sulphuraria reveals specific adaptations of primary carbon partitioning in green plants and red algae. Plant Physiol., 148, 1487-1496. Strain(s): 3638  PubMed: 18799657 DOI: 10.1104/pp.108.129478 Liu, C. B., Lin, L. P., Su, Y. C. 1996 Utilization of Chlorella vulgaris for uptake of nitrogen, phosphorus and heavy metals. J. Chin. Agr. Chem. Soc., 34, 331-343 (in Chinese with English summary). Keywords: Chlorella vulgaris; heavy metals; nitrogen; phosphorus Strain(s): 227  Liu, J. Y., Jiang, T., Zhang, J. P., Liang, D. C. 1999 Crystal structure of allophycocyanin from red algae Porphyra yezoensis at 2.2-angstrom resolution. J. Biol. Chem., 274, 16945-16952. Strain(s): 2104  PubMed: 10358042 DOI: 10.1074/jbc.274.24.16945 Liu, J., Gerken, H., Li, Y. 2014 Single-tube colony PCR for DNA amplification and transformant screening of oleaginous microalgae. J. Appl. Microbiol., 26, 1719-1726. Keywords: Biofuels; Colony PCR; High throughput; Microalgae; Single tube; Transformant screening Strain(s): 144  DOI: 10.1007/s10811-013-0220-3 Liu, J., Yang, C., Chi, Y., Wu, D., Dai, X., Zhang, X., Igarashi, Y., Luo, F. 2019 Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake. J. Basic Microbiol., 59, 1112-1124. Keywords: Bacillus licheniformis; Microcystis aeruginosa; algicidal bacterium; biocontrol agent; cyanobacterial blooms Strain(s): 843  PubMed: 31502316 DOI: 10.1002/jobm.201900112 Liu, J., Zhang, M., Huang, Z., Fang, J., Wang, Z., Zhou, C., Qiu, X. 2023 Diversity, biosynthesis and bioactivity of aeruginosins, a family of cyanobacteria-derived nonribosomal linear tetrapeptides. Mar. Drugs, 21, 217 (article ID). Keywords: aeruginosins; Choi; biogenesis; structural diversity; nonribosomal polypeptide synthesis; serine protease inhibitory activity Strain(s): 89,  98,  101,  205,  298  PubMed: 37103356 DOI: 10.3390/md21040217 Liu, L., Chen, J., Lim, P-E., Wei, D. 2018 Dual-species cultivation of microalgae and yeast for enhanced biomass and microbial lipid production. J. Appl. Phycol., 30, 2997–3007. Keywords: Chlorella; Oleaginous yeast; Artificial consortium; Mixed culture; Microbial lipid production Strain(s): 227  DOI: 10.1007/s10811-018-1526-y Liu, S.-L., Chiang, Y.-R., Yoon, H. S., Fu, H.-Y. 2020 Comparative genome analysis reveals Cyanidiococcus gen. nov., a new extremophilic red algal genus sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta). J. Phycol., 56, 1428-1442. Strain(s): 3377,  4390  DOI: 10.1111/jpy.13056 Liu, SH., Zhang, PY., Cong, BL., Liu, CL., Lin XZ., Shen, JH., Huang, XH. 2010 Molecular cloning and expression analysis of a cytosolic Hsp70 gene from Antarctic ice algae Chlamydomonas sp. ICE-L. Extremophiles, 14, 329-337. Keywords: Antarctic ice algae; Chlamydomonas sp. ICE-L; Heat shock protein; Hsp70; Psychrophile; Stress Strain(s): 843  DOI: 10.1007%2Fs00792-010-0313-8 Liu, W., Au, D. W.T., Anderson, D. M., Lam, P. K.S., Wu, R. S.S. 2007 Effects of nutrients, salinity, pH and light: dark cycle on the production of reactive oxygen species in the alga Chattonella marina. J. Exp. Mar. Biol. Ecol., 346, 76-86. Keywords: Chattonella marina; Iron; Nutrient; pH; Physical parameters; Plasma membrane; Reactive oxygen species; Redox Strain(s): 3  DOI: 10.1016/j.jembe.2007.03.007 Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2014 Effects of temperature on life history traits of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Limnology, 15, 85-97. Keywords: Life history traits; Temperature effects; Eodiaptomus japonicus; Copepod dynamics; Individual variability Strain(s): 282,  2235  DOI: 10.1007/s10201-013-0417-9 Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2015 Combined effects of temperature and food concentration on growth and reproduction of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Freshw. Biol., 60, 2003-2018. Keywords: copepod dynamics; egg production; Eodiaptomus japonicus; individual growth rates; temperature–food effects Strain(s): 282,  2235  DOI: 10.1111/fwb.12626 Liu, X., Fujiwara, M., Kodera, T., Watanabe, K., Akizuki, S., Kishi, M., Koyama, M., Toda, T., Ban, S. 2020 Conditions for continuous cultivation of Chlorella sorokiniana and nutrient removal from anaerobic digestion effluent of aquatic macrophytes. Int. Biodeterior. Biodegrad., 149, 104923 (article ID). Keywords: Flow-through cultivation; pH-controlled process; Biomass recovery; Green algae; Energy recycling; Wastewater treatment Strain(s): 2168  DOI: 10.1016/j.ibiod.2020.104923 Liu, X., Syuhei, B. 2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter. J. Plankton Res., 39, 111-121. Keywords: temperature acclimatization; metabolic rates; oxygen consumption rates; zooplankton; optical oxygen meter Strain(s): 282,  2235  DOI: 10.1093/plankt/fbw084 Liu, Y. & Wei, D. 2023 Enhancing carbon dioxide fixation and co-production of protein and lutein in oleaginous Coccomyxa subellipsoidea by a stepwise light intensity and nutrients feeding strategy. Bioresour. Technol., 376, 28885 (article ID). Keywords: Coccomyxa subellipsoidea; CO2 fixation; Protein; Lutein; Stepwise feeding Strain(s): 2166  PubMed: 36925078 DOI: 10.1016/j.biortech.2023.128885 Liu, Y., Hao, A., Iseri, Y., Kuba, T., Zhang, A. 2014 A comparison of the mussel Anodonta woodiana's acute physiological responses to different algae diets. JOCET, 2, 126-131. Keywords: Anodonta woodiana; microcystis aeruginosa; scenedesmus obliquus; scope for growth (SFG) Strain(s): 90,  2279  DOI: 10.7763/JOCET.2014.V2.106 Liu, Y., Hao, A., Iseri, Y., Li, C., Zhang, Z., Kuba, T. 2015 Possible survival mechanisms of Sinanodonta woodiana exposed to microcystin. J. JSCE, 3, 259-267. Keywords: Sinanodonta woodiana; selective feeding mechanism; Microcystis-blooming; detoxification mechanism; scope for growth (SFG) Strain(s): 90,  2279  DOI: 10.2208/journalofjsce.3.1_259 Liu, Z., Hou, Y., He, C., Wang, X., Chen, S., Huang, Z., Chen, F. 2020 Enhancement of linoleic acid content stimulates astaxanthin esterification in Coelastrum sp. Bioresour. Technol., 300, 122649 (article ID). Keywords: Linoleic acid; astaxanthin esterification; Coelastrum sp.; Free astaxanthin; Fatty acid profile Strain(s): 144  PubMed: 31896045 DOI: 10.1016/j.biortech.2019.122649 Livingston, G., Fukumori, K., Provete, D. B., Kawachi, M., Takamura, N., Leibold, M. A. 2017 Predators regulate prey species sorting and spatialdistribution in microbial landscapes. J. Anim. Ecol., 86, 501-510. Keywords: bacteria; colonization; dispersal; disturbance; protists; spatial pattern; variation partitioning Strain(s): 2239  PubMed: 28138991 DOI: 10.1111/1365-2656.12639 Loganathan, N., Tsai, YC., Mueller-Cajar, O. 2016 Characterization of the heterooligomeric red-type rubisco activase from red algae. Proc. Nati. Acad. Sci. U. S. A., 113, 14019-14024. Keywords: rubisco; activase; photosynthesis; AAA+ proteins; red algae Strain(s): 1332  PubMed: 27872295 DOI: 10.1073/pnas.1610758113 Logares, R., Shalchian-Tabrizi, K., Boltovskoy, A., Rengefors, K. 2007 Extensive dinoflagellate phylogenies indicate infrequent marine–freshwater transitions. Mol. Phylogenet. Evol., 45, 887-903. 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Strain(s): 2755,  2756,  2758,  3667,  3668,  3669,  3670,  3671,  3835,  3849  PubMed: 10.3775/jie.96.352 DOI: 10.1038/s41598-017-12412-5 Lu, J. & Takeuchi, T. 2004 Spawning and egg quality of the tilapia Oreochromis niloticus fed solely on raw Spirulina throughout three generations. Aquaculture, 234, 625-640. Keywords: Closed ecological recirculating aquaculture system (CERAS); egg quality; larval quality; Oreochromis niloticus; parent; progeny; reproduction; spawn; Spirulina platensis Strain(s): 39  DOI: 10.1016/j.aquaculture.2003.12.027 Lu, J., Satoh, H., Takeuchi, T. 2008 Development of models of threshold and efficient algal densities for larval and juvenile tilapia Oreochromis niloticus on raw Spirulina. Aquaculture, 285, 249-254. Keywords: assimilation; 14C labeling; CERAS (closed ecological recirculating aquaculture system); density; ingestion; Spirulina; Oreochromis niloticus Strain(s): 39  DOI: 10.1016/j.aquaculture.2008.08.039 Lu, J., Takeuchi, T., Satoh, H. 2004 Ingestion and assimilation of three species of freshwater algae by larval tilapia Oreochromis niloticus. Aquaculture, 238, 437-449. Keywords: carbon assimilation; closed ecological recirculating aquaculture system (CERAS); Chlorella; 14C labeling; Euglena; ingestion; Oreochromis niloticus; Spirulina Strain(s): 39,  48,  641  DOI: 10.1016/j.aquaculture.2004.05.002 Lu, J., Takeuchi, T., Satoh, H. 2006 Ingestion, assimilation and utilization of raw Spirulina by larval tilapia Oreochromis niloticus during larval development. Aquaculture, 254, 686-692. 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G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21,  22,  25,  26,  30,  39,  44,  73,  87,  88,  267,  592,  806,  843,  932,  970,  2098,  2100,  2107,  2108,  2111,  2549,  3275,  3754,  3756,  3974,  4073,  4074,  4075,  4101,  4103,  4106  PubMed: 31899489 DOI: 10.1093/molbev/msz308 MacKenzie, L. A., Smith, K. F., Rhodes, L. L., Brown, A., Langi, V., Edgar, M., Lovell, G., Preece, M. 2011 Mortalities of sea-cage salmon (Oncorhynchus tshawytscha) due to a bloom of Pseudochattonella verruculosa (Dictyochophyceae) in Queen Charlotte Sound, New Zealand. Harmful Algae, 11, 45-53. Keywords: Pseudochattonella verruculosa; Dictyochophyceae; salmon kill; Queen Charlotte Sound; New Zealand Strain(s): 1,  603  DOI: 10.1016/j.hal.2011.07.003 Maeda, I., Kudou, S., Iwai, S. 2021 Efficient isolation and cultivation of endosymbiotic Chlorella from Paramecium bursaria on agar plates by co-culture with yeast cells. J. 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Keywords: Chlamydomonas gerloffii; Chlamydomonas subangulosa; Chloromonas difformis nom. nov.; Chloromonas typhlos; molecular phylogeny; morphology; taxonomy Strain(s): 2215,  2243  Makino, W. & Ban, S. 2000 Response of life history traits to food conditions in a cyclopoid copepod from an oligotrophic environment. Limnol. Oceanogr., 45, 396-407. Strain(s): 282  DOI: 10.4319/lo.2000.45.2.0396 Makino, W. & Ban, S. 2003 Fecal pellet production between molts in a cyclopoid copopod: patterns, individual variability and implications for growth and development. Hydrobiologia, 501, 101-107. Keywords: Cyclops; molt; fecal pellet; variations; growth and development Strain(s): 282  DOI: 10.1023/A:1026211520190 Makita, Y., et al. 2021 Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nat. Commun., 12, 3593 (article ID). Strain(s): 2893  PubMed: 34135337 DOI: 10.1038/s41467-021-23741-5 Makiuchi, T., Nara, T., Annoura, T., Hashimoto, T., Aoki, T. 2007 Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups. Gene, 394(1-2), 78-86. Keywords: gene fusion; de novo pyrimidine biosynthesis; lateral gene transfer; evolutionary marker Strain(s): 48  DOI: 10.1016/j.gene.2007.02.009 Malone, C. F. S., Genuário, D. B., Vaz, M. G. M. V., Fiore, M. F., Sant’Anna, C. L. 2021 Monilinema gen. nov., a homocytous genus (Cyanobacteria, Leptolyngbyaceae) from saline‐alkaline lakes of Pantanal wetlands, Brazil. J. Phycol., 57, 473-483. Strain(s): 3755  PubMed: 33211341 DOI: 10.1111/jpy.13106 Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2019 Fatty acid content and profile of the novel strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) cultivated at reduced nitrogen and phosphorusconcentrations. J. Phycol., 55, 1154-1165. Keywords: Coccomyxa; fatty acid profile lipid; nitrogen and phosphorus deprivation; Trebouxiophyceae Strain(s): 2166,  2252,  2353  PubMed: 31318981 DOI: 10.1111/jpy.12903 Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2021 A new species of freshwater algae Nephrochlamys yushanlensis sp. nov. (Selenastraceae, Sphaeropleales) and its lipid accumulation during nitrogen and phosphorus starvation. J. Phycol., 57, 606-618. Strain(s): 2166  PubMed: 33296071 DOI: 10.1111/jpy.13116 Maltsev, Y., Maltseva, K., Kulikovskiy, M., Maltseva, S. 2021 Influence of light conditions on microalgae growth and content of lipids, carotenoids, and fatty acid composition. Biology-Basel, 10, 1060 (article ID). Keywords: carotenoids; fatty acids; light; lipids; microalgae; photoperiod Strain(s): 2151,  2152,  2159,  2169,  2170  PubMed: 34681157 DOI: 10.3390/biology10101060 Man-Aharonovich, D., Philosof, A., Kirkup, B. C., Le Gall, F., Yogev, T., Berman-Frank, I., Polz, M. F., Vaulot, D., Béjà, O. 2010 Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J., 4, 1044-1052. Keywords: picoeukaryotes; PPEs; psbA; transcripts; Mediterranean Sea; diversity Strain(s): 2588,  2682,  2687  PubMed: 20237514 DOI: 10.1038/ismej.2010.25 Manali, K. M., Arunraj, R., Ramakrishnan, G. S., Ramya, M. 2019 Development of sensitive and specific multiplex PCR method for the detection of microcystin producing cyanobacteria in spirulina food supplements. Food Sci. Biotechnol., 28, 609-614. Keywords: Spirulina food supplement; Multiplex PCR; Microcystin; Arthrospira platensis; Cyanotoxin Strain(s): 843  PubMed: 30956874 DOI: 10.1007/s10068-018-0476-0 Manali, KM., Arunraj, R., Kumar, T., Ramya, M. 2017 Detection of microcystin producing cyanobacteria in Spirulina dietary supplements using multiplex HRM quantitative PCR. J. Appl. Phycol., 29, 1279-1286. Keywords: Microcystin; Arthrospira platensis; Multiplex HRM qPCR; Dietary supplements; Liquid; chromatography–high-resolution mass spectrometr Strain(s): 843  DOI: 10.1007/s10811-016-1011-4 Mano, H., Okamoto, S. 2016 Preliminary ecological risk assessment of 10 PPCPs and their contributions to the toxicity of concentrated surface water on an algal species in the middle basin of Tama River. J. Water Environ. Technol., 14, 423-436. Keywords: bioassay; environmental risk; hazard quotien Strain(s): 35  DOI: 10.2965/jwet.15-045 Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Suzuki, Y., Park, CB., Yasui, N., Kobayashi, K., Tanaka, Y., Yamashita, N., Minamiyama, M. 2017 Water quality comparison of secondary effluent and reclaimed water to ambient river water of southern Okinawa Island via biological evaluation. Environ. Monit. Assess., 189, 442 (article ID). Keywords: Bioassay; Ecological risk; Feasibility study; Water reclamation; Water reuse Strain(s): 35  PubMed: 28791526 DOI: 10.1007/s10661-017-6160-7 Mao, F., He, Y., Gin, K. Y. 2020 Antioxidant responses in cyanobacterium Microcystis aeruginosa caused by two commonly used UV filters, benzophenone-1 and benzophenone-3, at environmentally relevant concentrations. J. Hazard. Mater., 396, 122587 (article ID). Keywords: Benzophenone-1; Benzophenone-3; Cyanobacteria; Oxidative stress Strain(s): 843  PubMed: 32335379 DOI: 10.1016/j.jhazmat.2020.122587 Mao, F., He, Y., Gin, KY. 2018 Evaluating the joint toxicity of two benzophenone-type UV filters on the Ggreen alga Chlamydomonas reinhardtii with response surface methodology. Toxics, 6, 8 (article ID). Keywords: Chlamydomonas reinhardtii; benzophenone-1; benzophenone-3; joint toxicity; response surface methodology Strain(s): 2463  PubMed: 29320457 DOI: 10.3390/toxics6010008 Mao, F., He, Y., Kushmaro, A., Gin, KY. 2017 Effects of benzophenone-3 on the green alga Chlamydomonas reinhardtii and the cyanobacterium Microcystis aeruginosa. Aquat. Toxicol., 193, 1-8. Keywords: Benzophenone-3; Toxicity; Green algae; Cyanobacteria; Photosynthesis; Uptake Strain(s): 843,  2463  PubMed: 28992446 DOI: 10.1016/j.aquatox.2017.09.029 Mao, J. F., Li, W., Liu, X., He, Y., Gin, K. Y.-H. 2023 Responses of cyanobacterium Microcystis aeruginosa under single and repeated ofloxacin exposure. Ecotox. Environ. Safe., 253, 114668 (article ID). Keywords: Ofloxacin; Toxicity; Flow cytometry; Microcystis aeruginosa; Repeated exposure Strain(s): 843  PubMed: 36812870 DOI: 10.1016/j.ecoenv.2023.114668 Marie, D., Le Gall, F., Edern, R., Gourvil, P., Vaulot, D. 2017 Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. J. Phycol., 53, 271-282. Keywords: antibiotics; BSA; flow cytometry; microalgal; cultures; nanoeukaryotes; phytoplankton; picoeukaryotes;; single cell sorting Strain(s): 2672  PubMed: 27878810 DOI: 10.1111/jpy.12495 Marin, B. 2012 Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist, 163, 778-805. Keywords: Marsupiomonadales; Marsupiomonas; Pedinomonas; Pedinophyceae; Resultor; Resultomonas Strain(s): 252,  483  PubMed: 22192529 DOI: 10.1016/j.protis.2011.11.004 Marin, B. & Melkonian, M. 1994 Flagellar hairs in prasinophytes (Chlorophyta): ultrastructure and distribution on the flagellar surface. J. Phycol., 30, 659-678. Keywords: flagellar hairs; Mamiella; Mantoniella; Nephroselmis; Prasinophyceae; Pseudoscourfieldia; Pterosperma; Pyramimonas; Scherffelia; ultrastructure Strain(s): 221,  483,  485  DOI: 10.1111/j.0022-3646.1994.00659.x Marin, B., Melkonian, M. 1999 Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist, 150, 399-417. Strain(s): 475  PubMed: 10714774 DOI: 10.1016/S1434-4610(99)70041-6 Marin, B., Melkonian, M. 2010 Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist, 161, 304-336. Keywords: prasinophytes; SSU rDNA; LSU rDNA; ITS2; systematics; freshwater; Monomastigales; Dolichomastigales; Mamiellales; Monomastigaceae; Dolichomastigaceae; Crustomastigaceae; Bathycoccaceae Strain(s): 252,  255,  360,  483  PubMed: 20005168 DOI: 10.1016/j.protis.2009.10.002 Marinič, D., Grilc, M., Hočevar, B., Delrue, F., Likozar, B. 2023 Liquefaction, cracking and hydrogenation of microalgae biomass resources to CO2 negative advanced biofuels: Mechanisms, reaction microkinetics and modelling. Renew. Energy, 203, 382-393. Keywords: Microalgae; Biofuel; Liquefaction; Hydrodeoxygenation; One-pot reaction Strain(s): 2173  DOI: 10.1016/j.renene.2022.12.055 Marron, A. O., Ratcliffe, S., Wheeler, G. L., Goldstein, R. E., King, N., Not, F., de Vargas, C., Richter, D. J. 2016 The evolution of silicon transport in eukaryotes. Mol. Biol. Evol., 33, 3226–3248. Keywords: silicon; eukaryotes; SIT, Lsi2; convergent evolution; transporter Strain(s): 2687  PubMed: 27729397 DOI: 10.1093/molbev/msw209 Marshall, J. A. & Hallegraeff, G. M. 1999 Comparative ecophysiology of the harmful alga Chattonella marina (Raphidophyceae) from South Australian and Japanese waters. J. Plankton Res., 21, 1809-1822. Strain(s): 118  DOI: 10.1093/plankt/21.10.1809 Marshall, J. A. & Newman, S. 2002 Differences in photoprotective pigment production between Japanese and Australian strains of Chattonella marina (Raphidophyceae). J. Exp. Mar. Biol. Ecol., 272, 13-27. Keywords: ultraviolet radiation; microalgae; raphidophytes; Chattonella; mycosporine amino acids; pigments; xanthophyll cycle; stratospheric ozone depletion Strain(s): 1,  118  DOI: 10.1016/S0022-0981(02)00034-5 Marshall, J. A., Hovenden, M., Oda, T., Hallegraeff, G. M. 2002 Photosynthesis does influence superoxide production in the ichthyotoxic alga Chattonella marina (Raphidophyceae). J. Plankton Res., 24, 1231-1236. Strain(s): 118  DOI: 10.1093/plankt/24.11.1231 Marshall, J. A., Munday, B., Yoshizawa, Y., Hallegraeff, G. M. 2001 Effect of irradiance of superoxide production by Chattonella marina (Raphidophyceae) from south Australia and Japan. In Harmful Algal Blooms 2000, Eds. by Hallegraeff et al., UNESCO 2001., pp. 316-319. Strain(s): 118  Marshall, J. A., Nichols, P. D., Hallegraeff, G. M. 2002 Chemotaxonomic survey of sterols and fatty acids in six marine raphidophyte algae. J. Appl. Phycol., 14, 255-265. Keywords: Chattonella antiqua; Chattonella marina; Chattonella subsalsa; chemotaxonomy; fatty acids; Fibrocapsa japonica; Heterosigma akashiwo; Olisthodiscus luteus; phycotoxins; raphydophytes; sterols Strain(s): 15,  118  Martin, R. M., Denney, M. K., Pound, H. L., Chaffin, J. D., Bullerjahn, G. S., McKay, R. M. L., Zastepa, A., Jones, K. A., Castro, H. F., Campagna, S. R., Wilhelm, S. W. 2023 Sulfolipid substitution ratios of Microcystis aeruginosa and planktonic communities as an indicator of phosphorus limitation in Lake Erie. Limnol. Oceanogr., 68, 1117-1131. Strain(s): 843  DOI: 10.1002/lno.12333 Maruyama, I., Ando, Y., Maeda, T., Hirayama, K. 1989 Uptake of vitamin B12 by various strains of unicellular algae Chlorella. Nippon Suisan Gakkaishi, 55, 1785-1790. Strain(s): 48,  226,  687,  2157,  2169,  2175  Maruyama, I., Nakamura, T., Matubayashi, T., Ando, Y., Maeda, T. 1986 Identification of the alga known as "marine Chlorella" as a member of the Eustigmatophyceae. Jpn. J. Phycol. (Sôrui), 34, 319-325. Strain(s): 2146  Maruyama, K. 1977 Classification of Chlorella strain by infrared absorption spectra of cell samples. Bot. Mag. Tokyo, 90, 67-77. Strain(s): 226,  227,  685,  687,  2151,  2163,  2170,  2175  DOI: 10.1007/BF02489470 Maruyama, K. 1977 Classification of Chlorella strains by cell appearance and group sera. Bot. Mag. Tokyo, 90, 57-66. Strain(s): 226,  227,  685,  2151,  2163,  2170,  2175  DOI: 10.1007/BF02489469 Maruyama, K. & Ohtsuki, T. 2024 A simple method for the preparation of single cells and regeneration of colonies of Botryococcus braunii NIES836. J. Microbiol. Methods, 216, 106859 (article ID). Keywords: Botryococcus braunii; Colony regeneration; Microalgae; Nutrient limitation; Single-cell preparation Strain(s): 836  PubMed: 37995829 DOI: 10.1016/j.mimet.2023.106859 Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-i, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2007 Centromere dynamics in the primitive red alga Cyanidioschyzon merolae. Plant J., 49, 1122-1129. Keywords: centromere; CENH3; chromosome segregation; Cyanidioschyzon merolae Strain(s): 3377  PubMed: 17319844 DOI: 10.1111/j.1365-313X.2006.03024.x Maruyama, S., Misawa, K., Iseki, M., Watanabe, M., Nozaki, H. 2008 Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes. BMC Evol. Biol., 8, 151 (article ID). Strain(s): 48  PubMed: 18485228 DOI: 10.1186/1471-2148-8-151 Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-I, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2004 The minimal eukaryotic ribosomal DNA units in the primitive red algae Cyanidioschyzon merolae. DNA Res., 11, 83-91. Keywords: BAC library; Genome organization; Nucleolus Strain(s): 3377  PubMed: 15449541 DOI: 10.1093/dnares/11.2.83 Mary, I., Tu, C.-J., Grossman, A., Vaulot, D. 2004 Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313. Microbiol., 150, 1271-1281. Strain(s): 2887  Masuda, I., Kamikawa, R., Ueda, M., Oyama, K., Yoshimatsu, S., Inagaki, Y., Sako, Y. 2011 Mitochondrial genomes from two red tide forming raphidophycean algae Heterosigma akashiwo and Chattonella marina var. marina. Int. J. Syst. Evol. Microbiol., 10, 130-137. Keywords: Chattonella; Genome evolution; Heterosigma; Mitochondrial genome; Red tide Strain(s): 115,  121,  557,  558,  603  DOI: 10.1016/j.hal.2010.08.004 Masumoto, H., Ohmura, Y., Degawa, Y. 2019 Lichenomphalia meridionalis (Hygrophoraceae, lichenized Basidiomycota) new to Asia. Opuscula Philolichenum, 18, 379-389. Keywords: Basidiolichen; Coccomyxa; distribution; Japan; molecular phylogeny; taxonomy Strain(s): 4343  Mathiot, C., Ponge, P., Gallard, B., Sassi, J.-F., Delrue, F., Le Moigne, N. 2019 Microalgae starch-based bioplastics: screening of ten strains and plasticization of unfractionated microalgae by extrusion. Carbohydr. Polym., 208/, 142-151. Keywords: Microalgae; Bioplastics; Starch; Plasticization; Extrusion Strain(s): 94,  227,  2152,  2173,  2195,  2280  PubMed: 30658785 DOI: 10.1016/j.carbpol.2018.12.057 Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Aeruginosins 102-A and B, new thrombin inhibitors from the cyanobacterium Microcystis viridis (NIES-102). Tetrahedron, 52, 14501-14506. Strain(s): 102  DOI: 10.1016/0040-4020(96)00890-3 Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Radiosumin, a trypsin inhibitor from the blue-green alga Plectonema radiosum. J. Org. Chem., 61, 8648-8650. Strain(s): 515  DOI: 10.1021/jo961130m Matsuda, Y., Shimada, T., Sakamoto, Y. 1992 Ammonium ions control gametic differentiation and dedifferentiation in Chlamydomonas reinhardtii. Plant Cell Physiol., 33, 909-914. Keywords: cell cycle progression; Chlamydomonas reinhardtii; NH4+ starvation; organic nitrogen compounds; sexual reproduction Strain(s): 2238  DOI: 10.1093/oxfordjournals.pcp.a078340 Matsui, H., Sugihara, S., Wada, M., Ozaki, T., Saitoh, T., Kotani, T. 2022 Application of genetic disruption of a Nannochloropsis oceanica cell wall synthesizing gene to n-3 HUFA enrichment of Brachionus plicatilis. Aquaculture, 552, 738022 (article ID). Keywords: cesA1; Fish oil; Homologous recombination; Live feed; Photoautotrophic microalgae Strain(s): 2145  DOI: 10.1016/j.aquaculture.2022.738022 Matsumoto, C., Sugiyama, T., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. IX. Further comparative studies on Chlorella and spinach leaf ribulose-1,5-diphosphate carboxylase. Arch. Biochem. Biophys., 135, 282-287. Strain(s): 2170  PubMed: 5391472 DOI: 10.1016/0003-9861(69)90541-4 Matsumoto, H., Takechi, K., Sato, H., Takio, S., Takano, H. 2012 Treatment with antibiotics that interfere with peptidoglycan biosynthesis inhibits chloroplast division in the desmid Closterium. PLoS One, 7, e40734 (article ID). Strain(s): 67  PubMed: 22815801 DOI: 10.1371/journal.pone.0040734 Matsumoto, M., Mayama, S., Nemoto, M., Fukuda, Y., Muto, M., Yoshino, T., Matsunaga, T., Tanaka, T. 2014 Morphological and molecular phylogenetic analysis of the high triglyceride-producing marine diatom, Fistulifera solaris sp. nov. (Bacillariophyceae). Phycol. Res., 62, 257-268. Keywords: 18S rDNA; JPCC DA0580; marine diatom; morphometric analyses Strain(s): 2722  DOI: 10.1111/pre.12066 Matsumoto, T., Kawachi, M., Miyashita, H., Inagaki, Y. 2012 Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. J. Plant Res., 125, 705-711. Keywords: Plastid replacement; Tertiary endosymbiosis; Serial secondary endosymbiosis Strain(s): 1411,  1868  PubMed: 22441568 DOI: 10.1007/s10265-012-0486-6 Matsumoto, T., Shinozaki, F., Chikuni, T., Yabuki, A., Takishita, K., Kawachi, M., Nakayama, T., Inouye, I., Hashimoto, T., Inagaki, Y. 2011 Green-colored plastids in the dinoflagellate genus Lepidodinium are of core Chlorophyte origin. Protist, 162, 268-276. Strain(s): 626,  1419,  1868,  2432  PubMed: 20829107 DOI: 10.1016/j.protis.2010.07.001 Matsunaga, N., Uehara, A., Murase, N., Kuriyoma, A. 2018 Cryopreservation of Spirulina (Arthrospira) platensis NIES-46 by snap-freezing considering trichome morphology. Cryobiology and Cryotechnology, 64, 75-83. Keywords: Spirulina (Arthrospira) platensis; cyanobacteria; snap-freezing; cryopreservation; trichome morphology Strain(s): 46  DOI: 10.20585/cryobolcryotechnol.64.2_75 Matsunaga, S., Hori, T., Takahashi, T., Kubota, M., Watanabe, M., Okamoto, K., Masuda, K., Sugai, M. 1998 Discovery of signaling effect of UV-B/C light in the extended UV-A/blue-type action spectra for step-down and step-up photo-phobic responses in the unicellular flagellate alga Euglena gracilis. Protoplasma, 201, 45-52. Keywords: action spectra; blue light; Euglena; photophobic responses; ultraviolet light Strain(s): 48  DOI: 10.1007/BF01280710 Matsunaga, S., Takahashi, T., Watanabe, M., Sugai, M., Hori, T. 1999 Control by ammonium ion of the change from step-up to step-down photophobically responding cells in the flagellate alga Euglena gracilis. Plant Cell Physiol., 40, 213-221. Keywords: ammonium ion; blue light; Euglena; greening; photophobic responses Strain(s): 48  DOI: 10.1093/oxfordjournals.pcp.a029530 Matsunaga, S., Watanabe, S., Sakaushi, S., Miyamura, S., Hori, T. 2003 Screening effect diverts the swimming directions from diaphototactic to positive phototactic in a disk-shaped green flagellate Mesostigma viride. Photochem. Photobiol., 77, 324-332. Strain(s): 476,  477  PubMed: 12685662 DOI: 2.0.CO;2" target="_blank">10.1562/0031-8655(2003)0772.0.CO;2 Matsuo, E., Inagaki, Y. 2018 Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates. PeerJ, 6, e5345 (article ID). Strain(s): 1868  PubMed: 30083465 DOI: 10.7717/peerj.5345 Matsuo, M., Katahata, A., Satoh, S., Matsuzaki, M., Nomura, M., Ishida, K. I., Inagaki, Y., Obokata, J. 2018 Characterization of spliced leader transsplicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer. PLoS One, 13, e0200961 (article ID). Strain(s): 4060  PubMed: 30024971 DOI: 10.1371/journal.pone.0200961 Matsushita, T., Kobayashi, Y., Nakamura, K., Matsui, Y., Ohno, K. 2010 Effect of transmembrane pressure on geosmin release from Cyanobacterial cell during microfiltration. Water Practice & Technology, 5, wpt2010049 (article ID). Keywords: Cyanobacteria; geosmin; microfiltration; water treatment Strain(s): 824  DOI: 10.2166/wpt.2010.049 Matsuzaki, M. et al. 2004 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature, 428, 653-657. Strain(s): 1332,  3377  PubMed: 15071595 DOI: 10.1038/nature02398 Matsuzaki, R., Hara, Y., Nozaki, H. 2012 A taxonomic revision of Chloromonas reticulata (Volvocales, Chlorophyceae), the type species of the genus Chloromonas, based on multigene phylogeny and comparative light and electron microscopy. Phycologia, 51, 74-85. Keywords: Chloromonadinia; Chloromonas; Chloromonas chlorococcoides comb. nov.; Chloromonas lineage; Chloromonas typhlos comb. nov.; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales Strain(s): 447  DOI: 10.2216/11-18.1 Matsuzaki, R., Hara, Y., Nozaki, H. 2014 A taxonomic study of snow Chloromonas species (Volvocales, Chlorophyceae) based on light and electron microscopy and molecular analysis of cultured material. Phycologia, 53, 293–304. Keywords: Chloromonadinia; Chloromonas fukushimae; Chloromonas tenuis; Molecular phylogeny; Morphology; Snow algae; Taxonomy; Ultrastructure Strain(s): 2379,  2380,  3389,  3390  DOI: 10.2216/14-3.1 Matsuzaki, R., Kawachi, M., Nozaki, H., Nohara, S., Suzuki, I. 2020 Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials. PLoS One, 15, e0238265 (article ID). Strain(s): 3389,  3390,  4452,  4453  PubMed: 2845939 DOI: 10.1371/journal.pone.0238265 Matsuzaki, R., Kawai-Toyooka, H., Hara, Y., Nozaki, H. 2015 Revisiting the taxonomic significance of aplanozygote morphologies of two “cosmopolitan” snow species of the genus Chloromonas (Volvocales, Chlorophyceae). Phycologia, 54, 491–502. Keywords: Chloromonas brevispina; Chloromonas krienitzii sp. nov.; Chloromonas nivalis; Molecular phylogeny; Morphology; Snow algae; Ultrastructure Strain(s): 2379,  2380,  3389,  3752,  3753  DOI: 10.2216/15-33.1 Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2010 Light and electron microscopy and molecular phylogenetic analyses of Chloromonas pseudoplatyrhyncha (Volvocales, Chlorophyceae). Phycol. Res., 58, 202-209. Keywords: Chloromonadinia; Chloromonas; Chloromonas lineage; molecular phylogeny; morphology; pyrenoid; ultrastructure; Volvocales Strain(s): 2563  DOI: 10.1111/j.1440-1835.2010.00577.x Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2013 Description of Chloromonas kasaiae sp. nov. (Volvocales, Chlorophyceae), based on comparative electron microscopy and molecular data. Phycologia, 52, 239-245. Keywords: Chloromonadinia; Chloromonas kasaiae; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales Strain(s): 2862  DOI: 10.2216/12-083.1 Matsuzaki, R., Nozaki, H., Kawachi, M. 2018 Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species. PLoS One, 13, e0193603 (article ID). Strain(s): 464,  2379,  2380,  2563,  2862,  3389,  3707,  3753  PubMed: 29570718 DOI: 10.1371/journal.pone.0193603 Matsuzaki, R., Nozaki, H., Takeuchi, N., Hara, Y., Kawachi, M. 2019 Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov. PLoS One, 14, e0210986 (article ID). Strain(s): 464,  2379,  2380,  2563,  2862,  3389,  3707,  3753,  4284  PubMed: 30677063 DOI: 10.1371/journal.pone.0210986 Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Kanesaki, Y., Yoshikawa, H., Mori, T., Nozaki, H. 2021 The Rubisco small subunits in the green algal genus Chloromonas provide insights into evolutionary loss of the eukaryotic carbon-concentrating organelle, the pyrenoid. BMC Ecol. Evol., 21, 11 (article ID). Keywords: Chloromonas; Evolution; Green algae; Hydrophobicity of RBCS helices; Pyrenoid; Pyrenoid loss; Rubisco small subunit (RBCS) Strain(s): 144,  424,  425,  2207,  2212,  2215,  2242,  2243,  2499,  3753,  4284  PubMed: 33514317 DOI: 10.1186/s12862-020-01733-1 Matumura, H., Muto, S., Miyachi, S. 1982 Light-induced conversion of NAD+ to NADP+ in Chlorella cells. Biochim. Biophys. Acta, 679, 300-307. Strain(s): 2160,  2161  DOI: 10.1016/0005-2728(82)90300-0 Mazalová, P., Šarhanová, P., Ondřej, V., Poulíčková, A. 2011 Quantificaion of DNA content in freshwater microalgae using flow cytometry: a modified protocol for selected green microalgae. Fottea, 11, 317-328. Keywords: DNA content; flow cytometry; desmids; microalgae; standards; Micrasterias pinnatifida Strain(s): 783  DOI: 10.5507/fot.2011.030 McDonald, S. M., Plant, J. N. Worden, A. Z. 2010 The mixed lineage nature of nitrogen transport and assimilation in marine eukaryotic phytoplankton: a case study of Micromonas. Mol. Biol. Evol., 27, 2268-2283. Keywords: nitrogen; Micromonas; Ostreococcus; green algae; green lineage; quantitative PCR; genomics; phylogeny Strain(s): 2672  PubMed: 20457585 DOI: 10.1093/molbev/msq113 McGregor, G. B., Sendall, B. C., Niiyama, Y., Tuji, A., Willis, A. 2023 Chrysosporum ovalisporum is synonymous with the true-branching cyanobacterium Umezakia natans (Nostocales/Aphanizomenonaceae). J. Phycol., 59, 326-341. Strain(s): 21,  26,  2665,  3585,  4103,  4490  PubMed: 36680435 DOI: 10.1111/jpy.13317 McKay, R. M. & Gibbs, S. P. 1989 Immunocytochemical localization of ribulose 1,5-bisphosphate carboxylase/oxygenase in light-limited and light-saturated cells of Chlorella pyrenoidosa. Protoplasma, 149, 31-37. Keywords: pyrenoid; ribulose 1,5-bisphosphate carboxylase/oxygenase; Chlorella pyrenoidosa; immunocytochemistry Strain(s): 687,  2142  McKindles, K. M., Manes, M. A., DeMarco, J. R., McClure, A., McKay, R. M., Davis, T. W., Bullerjahn, G. S. 2020 Dissolved microcystin release coincident with lysis of a Microcystis-dominated bloom in western Lake Erie attributed to a novel cyanophage. Appl. Environ. Microbiol., 86, e01397-20. Strain(s): 843  PubMed: 32859600 DOI: 10.1128/AEM.01397-20 Mcmillan, R. 1957 Morphogenesis and polymorphism of Ankistrodesmus spp. J. Gen. Microbiol., 17, 658-677. Strain(s): 2190,  2194,  2195  DOI: 10.1099/00221287-17-3-658 Meglič, A., Pecman, A., Rozina, T., Leštan, D., Sedmak, B. 2016 Electrochemical inactivation of cyanobacteria and microcystin degradation using a boron-doped diamond anode - A potential tool for cyanobacterial bloom control. J. Environ. Sci., 53, 248-261. Keywords: Cyanobacterial bloom control; Boron-doped diamond anode; Electro-oxidation; Microcystin degradation; Protein phosphatase-1 inhibition; Water remediation Strain(s): 843  PubMed: 28372749 DOI: 10.1016/j.jes.2016.02.016 Meriluoto, J., Codd, G. A. (eds.) 2005 TOXIC: cyanobacterial monitoring and cyanotoxin analysis. Acta Acad. Aboensis, ser, B, Vol. 65(1), 149 pp. Strain(s): 107  Meriluoto, J., Karlsson, K., Spoof, L. 2004 High-throughput screening of ten microcystins and nodularins, cyanobacterial peptide hepatotoxins, by reversed-phase liquid chromatography-electrospray ionization mass spectrometry. Chromatographia, 59, 291-298. Keywords: columun liquid chromatography; mass spectrometry detection; microcystins and nodularins; cyanobacteria; toxins Strain(s): 107  DOI: 10.1365/s10337-003-0163-y Merola, A., Castaldo, R., De Luca, P., Gambardella, R., Musacchio, A., Taddei, R. 1981 Revision of Cyanidium caldarium. Three species of acidophilic algae. Giorn Bot. Ital., 115, 189-195. Strain(s): 550  DOI: 10.1080/11263508109428026 Metcalf, J. S., Bell, S. G., Codd, G. A. 2000 Production of novel polyclonal antibodies against the cyanobacterial toxin microcystin-LR and their application for the detection and quantification of microcystins and nodularin. Water Res., 34, 2761-2769. Keywords: cyanobacteria; blue-green algae; microcystin; toxins; antibodies; immunoassays Strain(s): 42,  102,  103,  104,  595  DOI: 10.1016/S0043-1354(99)00429-7 Miao, H., Beardall, J., Gao, K. 2018 Calcification moderates the increased susceptibility to UV radiation of the coccolithophorid Gephryocapsa oceanica grown under elevated CO2 concentration: Evidence based on calcified and non-calcified cells. Photochem. Photobiol., 94, 994-1002. Strain(s): 1318  PubMed: 29701244 DOI: 10.1111/php.12928 Miao, H., Zhang, J., Shen, Q., Ichise, S., Asada, Y., Tian, Y., Utsumi, M., Lei, Z., Zhang, Z., Takanashi, H., Fujimoto, N., Nishimura, O., Akiba, M., Shimizu, K. 2022 Development of rapid PCR methods for the detection and quantification of geosmin-producing Dolichospermum spp. Water Air Soil Pollut., 233, 394 (article ID). Keywords: Cyanobacteria; Musty odor; Geosmin; geoA gene; Whole-cell PCR; Whole-cell qPCR Strain(s): 824,  1658,  1660  DOI: 10.1007/s11270-022-05859-4 Miao, M., Li, Z., Hwang, E.-A., Kim, H.-K., Lee, H., Kim, B.-H. 2020 Two new benthic diatoms of the genus Achnanthidium (Bacillariophyceae) from the Hangang River, Korea. Diversity-Basel, 12, 285 (article ID). Keywords: Achnanthidium; freshwater; molecular phylogeny; morphology; rbcL; SSU; taxonomy Strain(s): 372,  407,  410,  411,  412,  413,  414  DOI: 10.3390/d12070285 Mihara, S. 1961 Changes in glucosamine content of Chlorella cells during the course of their life cycle. Plant Cell Physiol., 2, 25-29. Strain(s): 2170  Mihara, S. & Hase, E. 1971 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. I. Some characteristics of the cell cycle. Plant Cell Physiol., 12, 225-236. Strain(s): 2235  Mihara, S. & Hase, E. 1971 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. II. Effects of chloramphenicol and cycloheximide on the length of cell cycle. Plant Cell Physiol., 12, 237-241. Strain(s): 2235  Mihara, S. & Hase, E. 1975 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. III. Some notes on the process of zoospore liberation. Plant Cell Physiol., 16, 371-375. Strain(s): 2235  Mihara, S. & Hase, E. 1975 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. IV. Effects of 6-methyl purine on the revolution of the cell cycle. Plant Cell Physiol., 16, 1121-1130. Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a075231 Mihara, S. & Hase, E. 1976 A short note on the effects of 6-methyl purine on the revolution of the cell cycle of Chlorella pyrenoidosa in synchronous culture. Plant Cell Physiol., 17, 403-406. Strain(s): 226  DOI: 10.1093/oxfordjournals.pcp.a075292 Mihara, S. & Hase, E. 1978 Studies on the vegetative life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. V. The transition point for the effect of 6-methyl purine in the cell cycle. Plant Cell Physiol., 19, 83-89. Keywords: cell cycle; Chlamydomonas; 6-methyl purine; transition point Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a075582 Mikami, H., Kawaguchi, M., Huang, C.-J., Matsumura, H., Sugimura, T., Huang, K., Lei, C., Ueno, S., Miura, T., Ito, T., Nagasawa, K., Maeno, T., Watari, H., Yamagishi, M., Uemura, S., Ohnuki, S., Ohya, Y., Kurokawa, H., Matsusaka, S., Sun, C.-W., Ozeki, Y., Goda, K. 2020 Virtual-freezing fluorescence imaging flow cytometry. Nat. Commun., 6, 1162 (article ID). Strain(s): 48  PubMed: 32139684 DOI: 10.1038/s41467-020-14929-2 Miklaszewska, M., Waleron, M., Morin, N., Calusinska, M., Wilmotte, A., De Marsac, NT., Rippka, R., Waleron, K. 2012 Elucidation of the gas vesicle gene clusters in cyanobacteria of the genus Arthrospira (Oscillatoriales, Cyanophyta) and correlation with ITS phylogeny. Eur. J. Phycol., 47, 233-244. Keywords: Arthrospira; cyanobacteria; gas vacuoles; gas vesicles; gvpA; gvpC; gvpN; internal transcribed spacer (ITS) Strain(s): 39  DOI: 10.1080/09670262.2012.692817 Mikulic, P. & Beardall, J. 2021 Oxidative and anti-oxidative responses to metal toxicity in an extremophilic alga (Cyanidium caldarium) and a neutrophilic alga (Chlamydomonas reinhardtii). Phycologia, 60, 513-523. Keywords: Oxidative stress; Reactive oxygen species (ROS); Zinc toxicity Strain(s): 2137  DOI: 10.1080/00318884.2021.1984044 Mikulic, P., Beardall, J. 2014 Contrasting ecotoxicity effects of zinc on growth and photosynthesis in a neutrophilic alga (Chlamydomonas reinhardtii) and an extremophilic alga (Cyanidium caldarium). Chemosphere, 112, 402-411. Keywords: Photosynthesis; Algae; Zinc; Extremophile; Neutrophile; Acclimation Strain(s): 2137  PubMed: 25048933 DOI: 10.1016/j.chemosphere.2014.04.049 Mimuro, M., Yamazaki, I., Tamai, N., Katoh, T. 1989 Excitation transfer in phycobilisomes at -196ºC isolated from the cyanobacterium Anabaena variabilis (M-3): Evidence for the plural transfer pathways to the terminal emitters. Biochim. Biophys. Acta, 973, 153-162. Strain(s): 2093  DOI: 10.1016/S0005-2728(89)80416-5 Minoda, A., Miyashita, S., Fujii, S., Inagaki, K., Takahashi, Y. 2022 Cell population behavior of the unicellular red alga Galdieria sulphuraria during precious metal biosorption. J. Hazard. Mater., 432, 128576 (article ID). Keywords: biosorption; adsorption mechanism; single cell ICP-MS; XAFS; metal selectivity Strain(s): 3638  PubMed: 35313161 DOI: 10.1016/j.jhazmat.2022.128576 Minoda, A., Nagasawa, K., Hanaoka, M., Horiuchi, M., Takahashi, H., Tanaka, K. 2005 Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae. Plant Mol. Biol., 59, 375-385. Keywords: Cyanidioschyzon merolae; microarray; photosynthesis; plastid; red algae; sigma factor Strain(s): 3377  PubMed: 16235106 DOI: 10.1007/s11103-005-0182-1 Minoda, A., Sakagami, R., Yagisawa, F., Kuroiwa, T., Tanaka, K. 2004 Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 45, 667-671. Keywords: Cultivation; — Cyanidioschyzon merolae; 5-FOA resistance; Homologous recombination; Red algae; Transformation Strain(s): 3377  PubMed: 18003671 DOI: 10.1093/pcp/pch087 Minoda, A., Sawada, H., Suzuki, S., Miyashita, S., Inagaki, K., Yamamoto, T., Tsuzuki, M. 2015 Recovery of rare earth elements from the sulfothermophilic red alga Galdieria sulphuraria using aqueous acid. Appl. Microbiol. Biotechnol., 99, 1513-1519. Keywords: Galdieria sulphuraria; Metal recovery; Red algae; Rare earth elements; Copper Strain(s): 3638  DOI: 10.1007/s00253-014-6070-3 Minoda, A., Weber, A. P. M., Tanaka, K., Miyagishima, S. 2010 Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol., 154, 1532-1540. Strain(s): 3377  PubMed: 20813908 DOI: 10.1104/pp.110.163188 Misaki, K., Morita, Y., Kobayashi, K., Sugawara, Y., Shimizu, Y., Kusakabe, T. 2019 Evaluation of algal photosynthesis inhibition activity for dissolved organic matter with the consideration of inorganic and coloring constituents. Chemosphere, 224, 333-342. Keywords: Natural organic matter (NOM); Palse amplitude modulation (PAM); System; Lake Biwa; Wastewater treatment plant (WWTP); Ammonia; Ethyl orange Strain(s): 2170,  2219  PubMed: 30826703 DOI: 10.1016/j.chemosphere.2019.02.106 Misumi, M. & Sonoike, K. 2017 Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa. Sci. Rep., 7, 46100 (article ID). Strain(s): 547  PubMed: 28387347 DOI: 10.1038/srep46100 Misumi, M., Katoh, H., Tomo, T., Sonoike, K. 2016 Relationship between photochemical quenching and non-photochemical quenching in six species of cyanobacteria reveals species difference in redox state and species commonality in energy dissipation. Plant Cell, 57, 1510-1517. Keywords: Chlorophyll fluorescence measurements; Cyanobacteria; Photochemical quenching; Respiration; State transition; Thermal dissipation Strain(s): 39  PubMed: 26712847 DOI: 10.1093/pcp/pcv185 Misumi, O., Matsuzaki, M., Nozaki, H., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Yoshida, Y., Kuroiwa, H., Kuroiwa, T. 2005 Cyanidioschyzon merolae genome A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol., 137, 567-585. Strain(s): 3377  PubMed: 15681662 DOI: 10.1104/pp.104.053991 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1,  8,  9,  14,  15,  17,  71,  115,  223,  225,  233,  234,  265,  274,  275,  276,  277,  278,  279,  280,  281,  282,  284,  293,  323,  324,  330,  333,  344,  345,  346,  347,  348,  350,  353,  372,  377,  388,  391,  395,  407,  408,  409,  413,  414,  417,  461,  462,  466,  487,  534,  548,  553,  556,  557,  558,  559,  560,  562,  587,  588,  589,  590,  603,  605,  622,  623,  695,  696,  697,  698,  699,  700,  701,  702,  703,  704,  705,  706,  707,  708,  709,  710,  711,  712,  713,  714,  715,  716,  741,  765,  766,  767,  805,  837,  997,  1001,  1002,  1003,  1004,  1005,  1006,  1007,  1009,  1011,  1016,  1017,  1044,  1045,  1046,  1047,  1302,  1303,  1324,  1327,  1330,  1339,  1340,  1349,  1353,  1370,  1375,  1376,  1379,  1383,  1384,  1385,  1386,  1387,  1391,  1392,  1393,  1395,  1398,  1399,  1400,  1401,  1699,  1700,  1730,  1813,  1815,  1816,  1826,  1827,  1831,  1862,  1863,  1864,  1865,  1874,  1963,  1964,  1965,  1974,  1975,  1976,  2142,  2143,  2144,  2145,  2147,  2148,  2300,  2331,  2332,  2351,  2363,  2364,  2365,  2369,  2370,  2376,  2506,  2533,  2534,  2535,  2536,  2537,  2590,  2633,  2668,  2689,  2690,  2691,  2693,  2694,  2696,  2697,  2707,  2716,  2717,  2718,  2720,  2722,  2723,  2725,  2726,  2729,  2730,  2731,  2732,  2770,  2771,  2772,  2773,  2839,  2840,  2841,  2842,  2843,  2844,  2859,  2872,  2878,  2890,  2899,  3391,  3689,  3690,  3691  Mitsutani, A., Yamasaki, I., Kitaguchi, H., Kato, J., Ueno, S., Ishida, Y. 2001 Analysis of algicidal proteins of a diatom-lytic marine bacterium Pseudoalteromonas sp. strain A25 by two-dimensional electrophoresis. Phycologia, 40, 286-291. Strain(s): 324  DOI: 10.2216/i0031-8884-40-3-286.1 Mitsuya, A., Nyunoya, T., Tamiya, H. 1953 Prepilot-plant experiment on algal mass culture. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 273-281. Strain(s): 2170  Miura, K., Yamano, T., Yoshioka, S., Kohinata, T., Inoue, Y., Taniguchi, F., Asamizu, E., Nakamura, Y., Tabata, S., Yamato, K. T., Ohyama, K., Fukuzawa, H. 2004 Expression profiling-based identification of CO2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 135, 1595-1607. Strain(s): 2235  PubMed: 15235119 DOI: 10.1104/pp.104.041400 Miura, T., Mikami, H., Isozaki, A., Ito, T., Ozeki, Y., Goda, K. 2018 On-chip light-sheet fluorescence imaging flow cytometry at a high flow speed of 1 m/s. Biomed. Opt. Express, 9, 3424-3433. Strain(s): 48  PubMed: 29984107 DOI: 10.1364/BOE.9.003424 Miya, A., Adachi, T., Tazawa, R., Suzuki, S., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae II. CO2/O2 gas exchange system. CELSS J., 7, 29-34 (in Japanese with English summary). Keywords: microalgae; CO2/O2 gas exchange system; regenerative life support system Strain(s): 39  Miyachi, S. 1959 Effect of poisons upon the mechanism of photosynthesis as studied by the pre-illumination experiments using carbon-14 as a tracer. Plant Cell Physiol., 1, 1-15. Strain(s): 2170  Miyachi, S. 1960 Effect of some sulfhydryl reagents on light-induced CO2-fixation in Chlorella. Plant Cell Physiol., 1, 117-130. Strain(s): 2170  Miyachi, S. 1962 Turnover of phosphate compounds in Chlorella cells under phosphate deficiency in darkness. Plant Cell Physiol., 3, 1-4. Strain(s): 2170  Miyachi, S. 1963 Metabolism of inorganic polyphosphates in growing Chlorella cells. In Photosynthes Mechanisms of Green Plants, Eds. by Shibata, K. et al., National Academy of Sciences - National Research Council, 1145, pp. 688-697. Strain(s): 2170  Miyachi, S. 1979 Light-enhanced dark CO2 fixation in CO3 plants. In Encyclopedia of Plant Physiology, New Series, 6, Eds. by Gibbs, M. & Latzko, E., Springer-Verlag, Berlin, pp. 68-76. Strain(s): 2170  Miyachi, S. & Hogetsu, D. 1970 Effects of preillumination with light of different wagelengths on subsequent dark CO2-fixation in Chlorella cells. Can. J. Bot., 48, 1203-1207. Strain(s): 2170  DOI: 10.1139/b70-179 Miyachi, S. & Miyachi, S. 1961 Modes of formation of phosphate compounds and their turnover in Chlorella cells during the process of life cycle as studied by the technique of synchronous culture. Plant Cell Physiol., 2, 415-424. Strain(s): 2170  Miyachi, S. & Miyachi, S. 1966 Sulfolipid metabolism in Chlorella. Plant Physiol., 41, 479-486. Strain(s): 2170  PubMed: 16656278 DOI: 10.1104/pp.41.3.479 Miyachi, S. & Miyachi, S. 1980 Effects of ammonia on carbon metabolism in photosynthesizing Chlorella vulgaris 11h: the replacement of blue light by ammonium ion. In The Blue Light Syndrome, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 429-434. Strain(s): 2160  Miyachi, S. & Miyachi, S. 1985 Ammonia induces starch degradation in Chlorella cells. Plant Cell Physiol., 26, 245-252. Keywords: ammonia effect; Chlorella; dark CO2 fixation; starch degradation; sucrose formation Strain(s): 687,  2157,  2160,  2170,  2173  DOI: 10.1093/oxfordjournals.pcp.a076903 Miyachi, S. & Miyachi, S. 1987 Some biochemical changes related to starch breakdown induced by blue light illumination and by addition of ammonia to Chlorella cells. Plant Cell Physiol., 28, 309-314. Keywords: ammonia; adenylates; blue light; Chlorella; orthophosphate; phosphorylase Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a077297 Miyachi, S. & Okabe, K. 1976 Oxygen enhancement of photosynthesis in Anacystis nidulans cells. Plant Cell Physiol., 17, 973-986. Strain(s): 2093,  3277  Miyachi, S. & Shiraiwa, Y. 1979 Form of inorganic carbon utilized for photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 20, 341-348. Keywords: carbon dioxide fixation; carbonic anbydrase; Chlorella; photosynthesis; transport of CO2 Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a075818 Miyachi, S. & Tamiya, H. 1961 Distribution and turnover of phosphate compounds in growing Chlorella cells. Plant Cell Physiol., 2, 405-414. Strain(s): 2170  Miyachi, S. & Tamiya, H. 1961 Some observations on the phosphorus metabolism in growing Chlorella cells. Biochim. Biophys. Acta, 46, 200-202. Strain(s): 2170  PubMed: 13771481 DOI: 10.1016/0006-3002(61)90669-2 Miyachi, S. & Tsuzuki, M. 1981 Carbonic anhydrase and carbon uptake in photosynthesis of green algae and terrestrial C3 plants. In Proceedings of the First Binational Joint-Symposium under Japan-Australia Cooperative Science Programme "Integration of Photosynthetic Carbon Metabolism as Basis of Plant Productivity", pp. 15-18. Strain(s): 2160  Miyachi, S., Hirokawa, T., Tamiya, H. 1955 Effect of quinone on the light-induced capacity of carbon dioxide fixation in green algae. J. Biochem., 42, 737-743. Strain(s): 2170  Miyachi, S., Hirokawa, T., Tamiya, H. 1957 The "background" CO2 fixation occurring in green cells and its possible relation to the mechanism of photosynthesis. In Research in Photosynthesis, Eds. by Gaffron, H. et al., Intersc. Publ. Inc., New York, pp. 205-212. Strain(s): 2170  Miyachi, S., Hirosawa, T., Tsuzuki, M. 1984 Regulation of photosynthetic carbon metabolism in microalgae by wavelength of incident light and by CO2 concentration. In Advances in Photosynthesis Research, Vol. 3, Ed. by Sybesma, C., M. Ninhoff / Dr. W. Junk Publishers, Hague, pp. 565-572. Strain(s): 19,  2093,  3277  Miyachi, S., Hogetsu, D., Miyachi, S. 1977 Effect of environmental factors on photosynthetic carbon metabolism. In Photosynthetic CO2 Assimilation and Photorespiration, Eds. by Vaklinova, S. G. et al., Publishing House of Bulgarian Academy of Science, Sofia, pp. 15-30. Strain(s): 2160  Miyachi, S., Izawa, S., Tamiya, H. 1955 Effect of oxygen on the capacity of carbon dioxide fixation by green algae. J. Biochem., 42, 221-244. Strain(s): 2170  Miyachi, S., Kamiya, A., Miyachi, S. 1980 Effects of blue light on respiration and non-photosynthetic CO2 fixation in Chlorella 11 h cells. In The Blue Light Syndrome, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 321-328. Strain(s): 2160  Miyachi, S., Kamiya, A., Muto, S. 1977 Isolation of peroxisomes from colorless Chlorella mutant cells and intracellular localization of isocitratelyase, malate synthase and phosphoenolpyruvate carboxylase. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 347-353. Strain(s): 2162  Miyachi, S., Kamiya, S., Miyachi, S. 1977 Wavelength-effect of incident light on carbon metabolish in Chlorella cells. In Biological Solar Energy Conversion, Eds. by Mitsui, A. et al., Academic Press, New York, pp. 167-182. Strain(s): 2160,  2162  Miyachi, S., Kanai, R., Benson, A. A. 1968 Aerobically bound CO2 in Chlorella cells. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K. et al., University of Tokyo Press, Tokyo, pp. 246-252. Strain(s): 2170  Miyachi, S., Kanai, R., Miyachi, S., Aoki, S. 1964 Metabolic roles of inorganic polyphosphates in Chlorella cells. Biochim. Biophys. Acta, 93, 625-634. Strain(s): 2170  PubMed: 14263160 DOI: 10.1016/0304-4165(64)90345-9 Miyachi, S., Miyachi, S, Tamiya, H. 1962 Effect of preillumination on the incorporation of sulfur in the lipid fraction of Chlorella cells. Plant Cell Physiol., 3, 193-196. Strain(s): 2170  Miyachi, S., Miyachi, S., Benson, A. A. 1965 Metabolism of phospholipids and galactolipids by Chlorella cells. Plant Cell Physiol., 6, 789-792. Strain(s): 2170  Miyachi, S., Oh-hama, T., Ogasawara, N. 1968 Effects of flash light of different wagelengths on dark 14CO2-fixation in Chlorella cells. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K. et al., University of Tokyo Press, Tokyo, pp. 400-407. Strain(s): 2170  Miyachi, S., Oh-hama, T., Tamiya, H. 1960 Effect of CO2 on the levels of DPNH and TPNH in pre-illuminated Chlorella cells. Plant Cell Physiol., 1, 151-153. Strain(s): 2170  Miyachi, S., Tsuzuki, M., Aizawa, K. 1985 Factors which enhance photosynthesis in microalgae under limiting CO2 concentrations. In Kinetics of Photosynthetic Carbon Metabolism in C3-plants. II. Electron Transport, Transport of CO2, Mathematical Models, Eds. by Viil, J. et al., Akademiya Nauka, Estonia SSR, pp. 88-92. Strain(s): 2160,  2235  Miyachi, S., Tsuzuki, M., Avramova, S. T. 1983 Utilization modes of inorganic carbon for photosynthesis in various species of Chlorella. Plant Cell Physiol., 24, 441-451. Keywords: bicarbonate fixation; carbonic anhydrase; Chlorella; photosynthetic CO2-fixation Strain(s): 687,  2093,  2157,  2160,  2173  Miyachi, S., Tsuzuki, M., Maruyama, I., Ganter, M., Miyachi, S. 1986 Effects of CO2 concentration during growth on the intracellular structure of Chlorella and Scenedesmus (Chlorophyta). J. Phycol., 22, 313-319. Keywords: Chlorella; CO2 concentration; electron microscopy; pyrenoid starch; Scenedesmus Strain(s): 687,  2157,  2160,  2170,  2173,  2280  Miyachi, S., Tsuzuki, M., Yagawa, Y. 1985 Carbonic anhydrase in various microalgae. In Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms, Eds. by Lucas, W. J. & Berry, J. A., American Society of Plant Physiologists, Rockville, Md, pp. 145-154. Strain(s): 2093,  2160,  2173  Miyaghishim, S., Nishida, K., Mori, T., Matsuzaki, M., Higashiyama, T., Kuroiwa, H., Kuroiwa, T. 2003 A plant-specific dynamin-related protein forms a ring at the chloroplast division site. Plant Cell, 15, 655-665. Strain(s): 3377  PubMed: 12615939 DOI: 10.1105/tpc.009373 Miyagi, N., Satoh, E., Fujii, T. 1989 Effects of n-alkylamines on the motility and viability of Heterosigma akashiwo cells. Plant Cell Physiol., 30, 637-642. Keywords: cell viability; Heterosigma akashiwo; n-alkylamine Strain(s): 6  DOI: 10.1093/oxfordjournals.pcp.a077787 Miyagi, N., Satoh, S., Fujii, T. 1992 A nitrate-inducible plasma membrane protein of a marine alga, Heterosigma akashiwo. Plant Cell Physiol., 33, 971-976. Keywords: Heterosigma akashiwo (Raphidophycean); nitrate; plasma membrane; protein Strain(s): 6  DOI: 10.1093/oxfordjournals.pcp.a078349 Miyagishima, S. & Wei, J. L. 2018 Procedures for cultivation, observation, and conventional experiments in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 31-41. Keywords: Cell cycle; Cell division; Cyanidiales; Cyanidioschyzon merolae; Red algae; Synchronous culture Strain(s): 3377  DOI: 10.1007/978-981-10-6101-1_3 Miyagishima, S., Suzuki, K., Okazaki, K., Kabeya, Y. 2012 Expression of the nucleus-encoded chloroplast division genes and proteins regulated by the algal cell cycle. Mol. Biol. Evol., 29, 2957-2970. Keywords: cell cycle; chloroplast division; endosymbiosis; endosymbiotic gene transfer Strain(s): 296,  484,  547,  1332,  2170,  3377  PubMed: 22490821 DOI: 10.1093/molbev/mss102 Miyagishima, S., Takahara, M., Kuroiwa, T. 2001a Novel filaments 5 nm diameter constitute the cytosolic ring of the plastid division apparatus. Plant Cell, 13, 707-721. Strain(s): 3377  PubMed: 11251107 DOI: 10.1105/tpc.13.3.707 Miyagishima, S., Takahara, M., Mori, T., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2001b Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings. Plant Cell, 13, 2257-2268. Strain(s): 3377  PubMed: 11595800 DOI: 10.1105/tpc.010185 Miyagishima, S., Wei, J. L., Nozaki, H., Hirooka, S. 2018 Cyadidiales: Evolution and habitats. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 3-15. Strain(s): 3377  DOI: 10.1007/978-981-10-6101-1_1 Miyagishimi, S., Tanaka, K. 2021 The unicellular red alga Cyanidioschyzon merolae—The simplest model of a photosynthetic eukaryote. Plant Cell Physiol., 62, 926–941. Keywords: Cyanidiales; Cyanidioschyzon merolae; Photosynthetic eukaryotes; Red algae Strain(s): 3377  PubMed: 33836072 DOI: 10.1093/pcp/pcab052 Miyashita, S., Groombridge, A. S., Fujii, S., Minoda, A., Takatsu, A., Hioki, A., Chiba, K., Inagaki, K. 2014 Highly efficient single-cell analysis of microbial cells by time-resolved inductively coupled plasma mass spectrometry. J. Anal. At. Spectrom., 29, 1598-1606. Strain(s): 3377  DOI: 10.1039/C4JA00040D Miyashita, S., Ogura, T., Fujii, S., Inagaki, K., Takahashi, Y., Minoda, A. 2021 Effect of lyophilization on the acid resistance of a unicellular red alga Galdieria sulphuraria during platinum recovery. J. Hazard. Mater. Advances, 3, 100015 (article ID). Keywords: Biosorption; Metal recovery; Algae; XAFS; ICP-MS; Platinum Strain(s): 3638  DOI: 10.1016/j.hazadv.2021.100015 Miyashita, S., Ogura, T., Kondo, T., Fujii, S., Inagaki, K., Takahashi, Y., Minoda, A. 2022 Recovery of Au from dilute aqua regia solutions via adsorption on the lyophilized cells of a unicellular red alga Galdieria sulphuraria: A mechanism study. J. Hazard. Mater., 425, 127982 (article ID). Keywords: Biosorption; Precious metal; Acidic effluent; Remediation; Wastewater treatment Strain(s): 3638  PubMed: 34894509 DOI: 10.1016/j.jhazmat.2021.127982 Miyauchi, H., Harada, K., Suzuki, Y., Okada, K., Aoki, M., Umemura, T., Fujiwara,S., Tsuzuki, M. 2021 Development of an algal cell-attached solid surface culture system for simultaneous wastewater treatment and biomass production. Algal Res., 58, 102394 (article ID). Keywords: Microalgae; Attached cell culture; Wastewater; Phosphorus uptake; Chlorella Strain(s): 2160  DOI: 10.1016/j.algal.2021.102394 Miyauchi, H., Okada, K., Fujiwara, S., Tsuzuki, M. 2020 Characterization of CO2 fixation on algal biofilms with an infrared gas analyzer and importance of a space-rich structure on the surface. Algal Res., 46, 101814 (article ID). Keywords: Attached culture; Carbon fixation; Chlorella; Photosynthesis Strain(s): 2160  DOI: 10.1016/j.algal.2020.101814 Miyoshi, Y. & Tsubo, Y. 1969 Permanent bleaching of Euglena by chloramphenicol. Plant Cell Physiol., 10, 221-225. Strain(s): 48  DOI: 10.1093/oxfordjournals.pcp.a074389 Mizoguchi, T., Kimura, Y., Yoshitomi, T., Tamiaki, H. 2011 The stereochemistry of chlorophyll-c3 from the haptophyte Emiliania huxleyi: the (132R)-enantiomers of chlorophylls-c are exclusively selected as the photosynthetically active pigments in chromophyte algae. Biochim. Biophys. Acta-Bioenerg., 1807, 1467-1473. Keywords: chlorophyll-c; chiral HPLC; enantioimer; chromophyte algae; light-harvesting complexes Strain(s): 71,  281,  696,  837  PubMed: 21806961 DOI: 10.1016/j.bbabio.2011.07.008 Mizoi, K., Rodríguez-González, V., Sasaki, M., Suzuki, S., Honda, K., Ishida, N., Suzuki, N., Kuchitsu, K., Kondo, T., Yuasa, M., Fujishima, A., Teshima, K., Terashima, C. 2022 Interactions between pH, reactive species, and cells in plasma-activated water can remove algae. RSC Adv., 12, 7626-7634. Strain(s): 2170  PubMed: 35424714 DOI: 10.1039/D1RA07774K Mizuguchi, H., Fujii, S., Fujii, S., Higa, R., Ishikawa, K., Hayakawa, K., Okamoto, T., Fuse, Y., Karatani, H., Yamada, E. 2018 Application of SYBR green real-time PCR assay to monitoring of phytoplankton during cultivation and in Lake Biwa. Limnological Study, , 3-12. Keywords: SYBR Green; real-time PCR; phytoplankton; Lake Biwa; dissolved organic matter Strain(s): 109,  275,  391,  665  Mizukami-Murata, S., Suzuki, Y., Sakurai, K., Yamashita, H. 2021 Freshwater alga Raphidocelis subcapitata undergoes metabolomic changes in response to electrostatic adhesion by micrometer-sized nylon 6 particles. Environ. Sci. Pollut. Res., 28, 66901–66913. Keywords: Powdered nylon 6; Raphidocelis subcapitata; Growth inhibition; Electrostatic adhesion; Metabolomic analysis; Amino acid catabolic pathway; γ-glutamyl cycle Strain(s): 35  PubMed: 34236613 DOI: 10.1007/s11356-021-15300-8 Mizuno, Y., Sato, A., Watanabe, K., Hirata, A., Takeshita, T., Ota, S., Sato, N., Zachleder, V., Tsuzuki, M., Kawano, S. 2013 Sequential accumulation of starch and lipid induced by sulfur deficiency in Chlorella and Parachlorella species. Bioresour. Technol., 129, 150-155. Keywords: Sulfur deficiency; Chlorella spp.; Parachlorella kessleri; Starch; Lipids Strain(s): 2169,  2173  PubMed: 23238344 DOI: 10.1016/j.biortech.2012.11.030 Mochida, K., Onduka, T., Amano, H., Ito, M., Tanaka, H., Fujii, K. 2012 Use of species sensitivity distributions to predict no-effect concentrations of an antifouling biocide, pyridine triphenylborane, for marine organisms. Mar. Pollut. Bull., 64, 2807-2814. Keywords: Algal growth inhibition test; Bayesian inference; Crustacean immobilization test; Fish acute toxicity; Primary risk analysis Strain(s): 324  PubMed: 23044030 DOI: 10.1016/j.marpolbul.2012.09.007 Mogi, K., Fujii, T. 2012 Evaluation of ethanol toxicity to oil producing algae using a microfluidic device. Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Okinawa, Japan 2012, pp. 857-859. Keywords: Microalgae; Botryococcus braunii; Toxicity assay; Vernier wall Strain(s): 836  Mogi, Y., Hamaji, T., Suzuki, M., Ferris, P., Mori, T., Kabeya, Y., Miyagishima, S., Nozaki, H. 2012 Evidence for tubular mating structures induced in each mating type of heterothallic Gonium pectorale (Volvocales, Chlorophyta). J. Phycol., 48, 670-674. Keywords: bilateral mating papilla; Chlorophyta; Gonium pectorale; isogamete; mating type; sexual reproduction; tubular mating structure; Volvocales Strain(s): 1710,  1711  PubMed: 27011083 DOI: 10.1111/j.1529-8817.2012.01149.x Mohd Zul, S., Iwamoto, K., Mohd Rahim, M. A., Abdullah, N., Mohamad, S. E., Shimizu, K., Hara, H. 2020 Production of liquid fertilizer from chicken feather waste by using subcritical water treatment for plant and algal growth. IOP Conf. Ser.: Earth Environ. Sci., 479, 012033 (article ID). Keywords: Subcritical water; fertilizer; chicken feather; Galdieria Strain(s): 3638  DOI: 10.1088/1755-1315/479/1/012033 Moia, I. C., Pereira, S. B., Domizio, P., De Philippis, R., Adessi, A. 2023 Phormidium ambiguum and Leptolyngbya ohadii exopolysaccharides under low water availability. Polymers, 15, 1889 (article ID). Keywords: EPS monosaccharidic composition; water deprivation; soil restoration; dehydration; biocrusts; biofilms Strain(s): 2121  PubMed: 37112036 DOI: 10.3390/polym15081889 Mojzeš, P., Gao, L., Ismagulova, T., Pilátová, J., Moudříková, Š., Gorelova, O., Solovchenko, A., Nedbal, L., Salih, A. 2020 Guanine, a high-capacity and rapid-turnover nitrogen reserve in microalgal cells. Proc. Natl. Acad. Sci. U. S. A., 117, 32722-32730. Strain(s): 2285,  2587,  2860  PubMed: 33293415 DOI: 10.1073/pnas.2005460117 Monteiro, P. R., do Amaral, S. C., Siqueira, A. S., Xavier, L. P., Santos, A. V. 2021 Anabaenopeptins: What We Know So Far. Toxins, 13, 522 (article ID). Keywords: cyanobacteria; peptide; NRPS; anabaenopeptin Strain(s): 81,  204,  595  PubMed: 34437393 DOI: 10.3390/toxins13080522 Moog, D., Nozawa, A., Tozawa, Y., Kamikawa, R. 2020 Substrate specifcity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red algaderived complex plastids. Sci Rep, 10, 1167 (article ID). Strain(s): 3581  PubMed: 31980711 DOI: 10.1038/s41598-020-58082-8 Moon, G., Lee, N., Kang, S., Park, J., Kim, Y.-E., Oh, Y.-K., Chung, S. 2021 Hydrothermal synthesis of novel two-dimensional α-quartz nanoplates and their applications in energy-saving, high-efficiency, microalgal biorefineries. Chem. Eng. J., 413, 127467 (article ID). Keywords: α-Quartz; Nanoplates; Hydrothermal; Microalgae; Biorefinery Strain(s): 144  DOI: 10.1016/j.cej.2020.127467 Moore, L. R., Rocap, G., Chisholm, S. W. 1998 Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature, 393, 464-467. Strain(s): 2880,  2887  PubMed: 9624000 DOI: 10.1038/30965 Moore, R. B., Oborník, M., Janouskovec, J., Chrudimský, T., Vancová, M., Green, D. H., Wright, S. W., Davies, N. W., Bolch, C. J., Heimann, K., Slapeta, J., Hoegh-Guldberg, O., Logsdon, J. M., Carter, D. A. 2008 A photosynthetic alveolate closely related to apicomplexan parasites. Nature, 451, 959-963. Strain(s): 4391  PubMed: 18288187 DOI: 10.1038/nature06635 Morel, A., Ahn, Y.-H., Partensky, F., Vaulot, D., Claustre, H. 1993 Prochlorococcus and Synechococcus: a comparative study of their optical properties in relation to their size and pigmentation. J. Mar. Res., 51, 617-649. Strain(s): 2880,  2881  DOI: 10.1357/0022240933223963 Morel, F.M.M., Rueter, J.G., Anderson,D.M., Guillard, R.R. 1979 Aquil: a chemically defined phytoplankton culture medium for trace metal studies. J. Phycol., 15, 135-141. Strain(s): 3600  DOI: 10.1111/j.1529-8817.1979.tb02976.x Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55. Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection Strain(s): 19,  21,  22,  23,  24,  25,  26,  27,  28,  29,  30,  31,  32,  33,  34,  35,  36,  37,  38,  39,  40,  41,  44,  45,  46,  50,  51,  52,  53,  54,  55,  56,  58,  59,  60,  61,  62,  63,  64,  65,  66,  67,  68,  69,  70,  73,  74,  75,  76,  77,  78,  79,  80,  81,  87,  89,  90,  91,  92,  93,  94,  95,  96,  97,  98,  99,  100,  101,  102,  103,  104,  105,  106,  107,  108,  109,  110,  111,  112,  119,  120,  122,  123,  125,  127,  128,  129,  130,  131,  132,  133,  134,  135,  137,  138,  139,  144,  147,  151,  152,  153,  154,  155,  156,  157,  158,  159,  160,  162,  163,  164,  165,  166,  167,  168,  170,  171,  172,  173,  174,  175,  176,  177,  178,  179,  180,  181,  182,  183,  185,  186,  187,  188,  189,  191,  192,  193,  194,  197,  198,  199,  200,  201,  202,  203,  204,  205,  206,  207,  208,  209,  210,  211,  212,  213,  214,  215,  216,  217,  224,  226,  227,  228,  229,  230,  231,  232,  241,  242,  243,  244,  245,  246,  248,  257,  259,  261,  262,  263,  266,  267,  268,  287,  288,  289,  290,  294,  295,  297,  298,  299,  300,  301,  302,  303,  305,  306,  308,  309,  310,  312,  313,  329,  334,  337,  338,  339,  340,  341,  342,  349,  351,  359,  360,  361,  362,  375,  378,  379,  380,  382,  384,  385,  390,  394,  396,  397,  398,  415,  416,  418,  419,  421,  422,  423,  424,  425,  426,  427,  428,  429,  430,  431,  432,  433,  434,  436,  437,  438,  439,  440,  446,  447,  448,  449,  450,  451,  452,  453,  454,  455,  456,  457,  458,  459,  460,  464,  468,  469,  474,  478,  479,  480,  481,  503,  504,  505,  506,  507,  509,  510,  512,  514,  515,  522,  523,  524,  527,  528,  529,  530,  531,  532,  536,  537,  538,  539,  540,  541,  542,  543,  544,  545,  546,  564,  565,  566,  567,  568,  569,  570,  571,  572,  573,  574,  575,  576,  577,  578,  579,  580,  581,  582,  583,  584,  585,  592,  593,  594,  595,  596,  597,  598,  604,  610,  628,  630,  631,  632,  633,  634,  635,  636,  637,  638,  639,  640,  641,  642,  643,  644,  645,  646,  647,  648,  649,  650,  651,  652,  653,  654,  655,  656,  657,  658,  659,  660,  661,  662,  663,  664,  665,  666,  667,  672,  685,  686,  687,  688,  689,  690,  691,  692,  693,  694,  717,  718,  719,  720,  721,  722,  723,  724,  725,  726,  727,  728,  729  Mori, I. C., Arias-Barreiro, C. R., Koutsaftis, A., Ogo, A., Kawano, T., Yoshizuka, K., Inayat-Hussain, S. H., Aoyama, I. 2015 Toxicity of tetramethylammonium hydroxide to aquatic organisms and its synergistic action with potassium iodide. Chemosphere, 120, 299-304. Keywords: Tetramethylammonium hydroxide; Potassium iodide; Aquatic toxicity; Synergism; D. magna; Semiconductor wastewater Strain(s): 35  PubMed: 25151133 DOI: 10.1016/j.chemosphere.2014.07.011 Mori, S., Nakamura, Y., Watanabe, M. M., Yamochi, S., Watanabe, M. 1982 The effect of various environmental factors on the growth yield of red tide algae II. Olisthodiscus luteus. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 71-86 (in Japanese with English summary). Strain(s): 6  Morimoto, D., Yoshida, T., Sawayama, S. 2020 Draft genome sequence of the astaxanthin-producing microalga Haematococcus lacustris Strain NIES-144. Microbiol. Resour. Ann.., 9, e00128-20 (article ID). Strain(s): 144  PubMed: 32499361 DOI: 10.1128/MRA.00128-20 Morimoto, T., Murakami, N., Nagatsu, A., Sakakibara, J. 1993 Studies on glycolipids. VII. Isolation of two new sulfoquinovosyl diacylglycerols from the green alga Chlorella vulgaris. Chem. Pharm. Bull., 41, 1545-1548. Keywords: sulfoquinovosyl diacylglycerol (SQDG); glyceroglycolipid; green alga; Chlorella vulgaris; branched fatty acid Strain(s): 227  DOI: 10.1248/cpb.41.1545 Morimura, Y. & Tamiya, H. 1963 Anomalies of the life cycle of Chlorella caused by some anti-metabolites. Maheshwari Comm. Vol., J. Indian Bot. Soc., 42A, 122-129. Strain(s): 2170  Morimura, Y., Yanagi, S., Tamiya, H. 1964 Synchronous mass-culture of Chlorella. Plant Cell Physiol., 5, 281-289. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a079043 Morita, E., Abe, T., Tsuzuki, M., Fujiwara, S., Sato, N., Hirata, A., Sonoike, K., Nozaki, H. 1999 Role of pyrenoids in the CO2-concentrating mechanism: comparative morphology, physiology and molecular phylogenetic analysis of closely related strains of Chlamydomonas and Chloromonas (Volvocales). Planta, 208, 365-372. Keywords: Chlamydomonas; Chloromonas; CO2-concentrating mechanism; molecular phylogeny; pyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase Strain(s): 447  DOI: 10.1007/s004250050571 Moriya, M., Nakayama, T., Inouye, I. 2000 Ultrastructure and 18S rDNA sequence analysis of Wobblia lunata gen. et sp. nov., a new heterotrophic flagellate (Stramenopiles, incertae sedis). Protist, 151, 41-55. Strain(s): 1015  PubMed: 10896132 DOI: 10.1078/1434-4610-00006 Moriya, M., Nakayama, T., Inouye, I. 2002 A new class of the Stramenopiles, Placididea Classis nova: description of Placidia cafeteriopsis gen. et sp. nov. Protist, 153, 143-156. Strain(s): 1014  PubMed: 12125756 DOI: 10.1078/1434-4610-00093 Morsy, F. M., Elbadry, M., El-Sayed, W. S., Abd El-Hady, D. 2019 Dark and photofermentation H2 production from hydrolyzed biomass of the potent extracellular polysaccharides producing cyanobacterium Nostoc commune and intracellular polysaccharide (glycogen) enriched Anabaena variabil is NIES-2095. Int. J. Hydrog. Energy, 44, 16199-16211. Keywords: Anabaena variabilis; Biohydrogen; Clostridium; Cyanobacterial polysaccharides; Nostoc commune; Rhodobacter capsulatus Strain(s): 2095  DOI: 10.1016/j.ijhydene.2019.05.024 Morsy, N., Matsuoka, S., Houdai, T., Matsumori, N., Adachi, S., Murata, M., Iwashita, T., Fujita, T. 2005 Isolation and structure elucidation of a new amphidinol with a truncated polyhydroxyl chain from Amphidinium klebsii. Tetrahedron, 61, 8606-8610. Keywords: amphidinol; Amphidinium; AM7; AM3; CID MS/MS Strain(s): 613  DOI: 10.1016/j.tet.2005.07.004 Moten, D., Batsalova, T., Basheva, D., Mladenov, R., Dzhambazov, B., Teneva, I. 2018 Outer membrane efflux protein (OMEP) is a suitable molecular marker for resolving the phylogeny and taxonomic status of closely related cyanobacteria. Phycol. Res., 66, 31-36. Keywords: cyanobacterial taxonomy; phylogenetic analysis; transmembrane transporter sequences Strain(s): 39,  843,  2104,  3754,  3755,  3756,  3757  DOI: 10.1111/pre.12203 Motokawa, S., Taguchi, S. 2015 Scattering properties of the dinoflagellates Prorocentrum micans and P. minimum. Plankton Benthos Res., 10, 154-162. Keywords: absorption; ac-9; equivalent spherical diameter; ratio of cellular carbon to chlorophyll a; scattering efficiency Strain(s): 218,  237  DOI: 10.3800/pbr.10.154 Motwalli, O., Essack, M., Jankovic, BR., Ji, B., Liu, X., Ansari, HR., Hoehndorf, R., Gao, X., Arold, ST., Mineta, K., Archer, JA., Gojobori, T., Mijakovic, I., Bajic, VB. 2017 In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria. BMC Genomics, 18, 33 (article ID). Keywords: Cyanobacteria; Free fatty acids; Biofuel; Screening method; Cell factories; Bioinformatics; Optimization; Computer science Strain(s): 39  PubMed: 2805677 DOI: 10.1186/s12864-016-3389-4 Mousavi, S., Najafpour, G.D., Mohammadi, M., Seifi, M.H. 2018 Cultivation of newly isolated microalgae Coelastrum sp. in wastewater. Bioprocess. Biosyst. Eng., 41, 519-530. Keywords: Microalgae; Coelastrum sp.; CO2 fixation; Wastewater treatment Strain(s): 244  PubMed: 29299676 DOI: 10.1007/s00449-017-1887-7 Muhetaer, G., Asaeda, T., Jayasanka, S. M. D. H., Baniya, M. B., Abeynayaka, H. D. L., Rashid, M. H., Yan, H. Y. 2020 Effects of light intensity and exposure period on the growth and stress responses of two cyanobacteria species: Pseudanabaena galeata and Microcystis aeruginosa. Water, 12, 407 (article ID). Keywords: cyanobacterial growth; stress responses; Pseudanabaena galeata; Microcystis aeruginosa; oxidative stress; antioxidative enzymes Strain(s): 111,  512  PubMed: 32045866 DOI: 10.3390/w12020407 Mukai, K., Shimasaki, Y., Qiu, X., Kato-Unoki, Y., Chen, K., Takai, Y., Khanam M. R. M., Chairil, A. E., Oshima, Y. 2020 Gene expression stability of candidate reference genes under different culture conditions for quantitative PCR in the raphidophyte Chattonella marina. Phycologia, 59, 556-565. Keywords: Chattonella marina; Quantitative PCR; Reference gene Strain(s): 1  DOI: 10.1080/00318884.2020.1816041 Mukai, K., Teramoto, A., Qiu, X., Shimasaki, Y., Kato-Unoki, Y., Lee, J. M., Mizoguchi, N., Khanam, M. R. M., Satone, H., Tatsuke, T., Kusakabe, T., Oshima, Y. 2018 Gene structure and cDNA sequence of 2-Cys peroxiredoxin in the harmful algal bloom species Chattonella marina and its gene transcription under different light intensities. Eur. J. Phycol., 53, 29-38. Keywords: Chattonella marina; 2-Cys peroxiredoxin; H2O2 scavenging activity; strong light; harmful algal bloom species; nuclear-encoded plastid RNA polymerase; plastid-encoded plastid RNA polymerase Strain(s): 1  DOI: 10.1080/09670262.2017.1346206 Mulholland, M.R., Shoemaker, C., Ohki, K., Capone, D.G. 1999 Utilization of combined forms of N in cultures and populations of Trichodesmium spp.. In Marine cyanobacteria and related organisms, Eds. by Charpy, L., Larkum, Bulletin de l'Institut Oceanographique, Monaco, Special paper, 19, pp. 279-286. Strain(s): 3600  Mulhollannd, M. R., Ohki, K., Capone, D. G. 1999 Nitrogen utilization and metabolism relative to pattern of N2 fixation in cultures of Trichodesmium NIBB1067. J. Phycol., 35, 977-988. Keywords: amino acids; glutamate; glutamine; glutamine synthetase; N turnover; N2 fixation; NH4+ uptake; NO3-; Trichodesmium; urea Strain(s): 3600  DOI: 10.1046/j.1529-8817.1999.3550977.x Mulhollannd, M. R., Ohki, K., Capone, D. G. 2001 Nutrient controls on nitrogen uptake and metabolism by natural populations and cultures of Trichodesmium (Cyanobacteria). J. Phycol., 37, 1001-1009. Keywords: Glutamate; glutamine; glutamine synthetase; N2 fixation; N uptake; Trichodesmium Strain(s): 3600  DOI: 10.1046/j.1529-8817.2001.00080.x Munakata, H., Nakada, T., Nakahigashi, K., Nozaki, H., Tomita, M. 2016 Phylogenetic position and molecular chronology of a colonial green flagellate, Stephanosphaera pluvialis (Volvocales, Chlorophyceae), among unicellular algae. J. Eucaryot. Microbiol., 63, 340-348. Keywords: Balticola; coloniality; divergence time; evolution; molecular phylogeny Strain(s): 123,  144,  421,  428,  432,  439,  446,  567,  569,  571,  656,  861,  887,  968,  1048,  2293,  2564,  4124,  4125  PubMed: 26595722 DOI: 10.1111/jeu.12283 Munekage, Y., Iwasaki, N., Le, T. X., Hasegawa, H., Natukawa, Y., Kikuhara, S. 2002 Studies on the distribution of antibiotics in water, suspended solid, bottom mud in semi-enclosed sea and its accumulation in plankton. Proceedings of the 12th International Offshore and Polar Engineering Conference, Kitakyushu, Japan 2002, pp. 425-431. Keywords: antibiotics; distribution; mud; sedimentation particles; accumulation; absorption; plankton Strain(s): 17,  613  Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422. Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles Strain(s): 3808  PubMed: 24881086 DOI: 10.1093/gbe/evu109 Muñoz, H. E, Li, M., Riche, C. T., Nitta, N., Diebold, E., Lin, J., Owsley, K., Bahr, M., Goda, K., Di Carlo, D. 2018 Single-cell analysis of morphological and metabolic heterogeneity in Euglena gracilis by fluorescence imaging flow cytometry. Anal. Chem., 90, 11280–11289. Strain(s): 48  PubMed: 30138557 DOI: 10.1021/acs.analchem.8b01794 Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, D. J., Archibald, J. M., Slamovits, C. H. 2017 The new red algal subphylum proteorhodophytina comprises the largest and most divergent plastid genomes known. Curr. Biol., 27, 1-8. Keywords: chloroplast; group II introns; insertion sequences; deep phylogeny; ptDNA; plastid genome; red algae; Rhodophyta; secondary plastids; transposases Strain(s): 2662,  2742  PubMed: 28528908 DOI: 10.1016/j.cub.2017.04.054 Murakami, H., Kakutani, N., Kuroyanagi, Y., Iwai, M., Hori, K., Shimojima, M., Ohta, H. 2020 MYB-like transcription factor NoPSR1 is crucial for membrane lipid remodeling under phosphate starvation in the oleaginous microalga Nannochloropsis oceanica. FEBS Lett., 594, 3384-3394. Keywords: membrane lipid; Nannochloropsis oceanica; phosphate starvation; transcription factor Strain(s): 2145  PubMed: 32770739 DOI: 10.1002/1873-3468.13902 Murakami, H., Nobusawa, T., Hori, K., Shimojima, M., Ohta, H. 2018 Betaine lipid is crucial for adapting to low temperature and phosphate deficiency in Nannochloropsis. Plant Physiol., 177, 181–193. Strain(s): 2145  PubMed: 29555786 DOI: 10.1104/pp.17.01573 Murakami, M., Ishida, K., Okino, T., Okita, Y., Matsuda, H., Yamaguchi, K. 1995 Aeruginosins 98-A and B, trypsin inhibitors from the blue-green alga Microcystis aeruginosa (NIES-98). Tetrahedron Letters, 36, 2785-2788. Strain(s): 98  DOI: 10.1016/0040-4039(95)00396-T Murakami, M., Itou, Y., Ishida, K., Shin, H. J. 1999 Prenylagaramides A and B, new cyclic peptides from two strains of Oscillatoria agardhii. J. Nat. Prod., 62, 752-755. Strain(s): 205,  596  Murakami, M., Kodani, S., Ishida, K., Matsuda, H., Yamaguchi, K. 1997 Micropeptin 103, a chymotrypsin inhibitor from the cyanobacterium Microcystis viridis (NIES-103). Tetrahedron Letters, 38, 3035-3038. Strain(s): 103  DOI: 10.1016/S0040-4039(97)00528-5 Murakami, M., Okita, Y., Matsuda, H., Okino, T., Yamaguchi, K. 1994 Aeruginosin 298-A, a thrombin and trypsin inhibitor from the blue-green alga Microcystis aeruginosa (NIES-298). Tetrahedron Letters, 35, 3129-3132. Strain(s): 298  DOI: 10.1016/S0040-4039(00)76848-1 Murakami, M., Sato, N., Anegawa, A., Nakada, N., Harada, A., Komatsu, T., Takada, H., Tanaka, H., Ono, Y., Furumai, H. 2008 Multiple evaluations of the removal of pollutants in road runoff by soil infiltration. Water Res., 42, 2745-2755. Keywords: Groundwater contamination; Infiltration facility; Road dust; Urban runoff; Soil infiltration column test; Water-soluble micropollutants Strain(s): 35  DOI: 10.1016/j.watres.2008.02.004 Murakami, M., Shin, H. J., Matsuda, H., Ishida, K., Yamaguchi, K. 1997 A cyclic peptide, anabaenopeptin B, from the cyanobacterium Oscillatoria agahdhii. Phytochemistry, 44, 449-452. Keywords: Oscillatoria agardhii; cyanobacterium; cyclic peptide; anabaenopeptin B Strain(s): 204  DOI: 10.1016/S0031-9422(96)00437-2 Murakami, M., Sun, Q., Ishida, K., Matsuda, H., Okino, T., Yamaguchi, K. 1997 Microviridins, elastase inhibitors from the cyanobacterium Nostoc minutum (NIES-26). Phytochemistry, 45, 1197-1202. Keywords: Nostoc minutum; Cyanophyceae; cyclic peptide; microviridin G; microviridin H; elastase inhibitor; protease inhibitor Strain(s): 26  DOI: 10.1016/S0031-9422(97)00131-3 Murakami, M., Suzuki, S., Itou, Y., Kodani, S., Ishida, K. 2000 New anabaenopeptins, potent carboxypeptidase-A inhibitors from the cyanobacterium Aphanizomenon flos-aquae. J. Nat. Prod., 63, 1280-1282. Strain(s): 81  PubMed: 11000037 DOI: 10.1021/np000120k Murakami, N., Shirahashi, H., Nagatsu, A., Sakakibara, J. 1992 Two unsaturated 9R-hydroxy fatty acids from the cyanobacterium Anabaena flos-aquae f. flos-aquae. Lipids, 27, 776-778. Strain(s): 74  Murakami, N., Shirahashi, H., Nagatsu, A., Sakakibara, J. 1993 Studies on glycolipids. VI. New acyl-distributed glyceroglycolipids from the nitrogen-fixing cyanobacterium Anabaena flos-aquae f. flos-aquae. Chem. Pharm. Bull., 41, 1177-1179. Keywords: glyceroglycolipid; nitrogen-fixing algae; Anabaena flos-aquae f. flos-aquae; cyanobacterium Strain(s): 74  DOI: 10.1248/cpb.41.1177 Murakami, N., Shirahashi, H., Sakakibara, J., Tsuchida, Y. 1992 A novel glyceroglycolipid from the nitrogen-fixing cyanobacterium Anabaena flos-aquae f. flos-aquae. Chem. Pharm. Bull., 40, 285-287. Keywords: cyanobacterium; Anabaena flos-aquae f. flos-aquae; nitrogen-fixation; glycolipid Strain(s): 74  DOI: 10.1248/cpb.40.285 Muramoto, K., Nakada, T., Shitara, T., Hara, Y., Nozaki, H. 2010 Re-examination of the snow algal species Chloromonas miwae (Fukushima) Muramoto et al., comb. nov. (Volvocales, Chlorophyceae) from Japan, based on molecular phylogeny and cultured material. Eur. J. Phycol., 45, 27-37. Keywords: Carteria miwae; Chloromonas miwae comb. nov.; Chlorophyceae; molecular phylogeny; morphology; sexual cycle; snow algae; taxonomy; Volvocales Strain(s): 2379,  2380  DOI: 10.1080/09670260903272607 Murano, F. & Fujita, Y. 1967 Comparative studies of photochemical oxidation-reduction reactions in lamellar fragments of various algae and spinach. Plant Cell Physiol., 8, 673-682. Strain(s): 19,  21,  37,  48  DOI: 10.1093/oxfordjournals.pcp.a079302 Murata, N. 1977 Uphill energy transfer from chlorophyll a to phycobilins in blue-green algae Anabaena variabilis and Anacystis nidulans. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 9-13. Strain(s): 2093,  3277  Murata, N., Wada, H., Hirasawa, R. 1984 Reversible and irreversible inactivation of photosynthesis in relation to the lipid phases of membranes in the blue-green algae (cyanobacteria) Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 25, 1027-1032. Strain(s): 2093,  3277  Muravenko, O., Selyakh, I., Kononenko, N., Stadnichuk, I. 2001 Chromosome numbers and nuclear DNA contents in the red microalgae Cyanidium caldarium and three Galdieria species. Eur. J. Phycol., 36, 227–232. Keywords: chromosome number; Cyanidium caldarium; DNA content; Galdieria maxima; Galdieria partita; Galdieria sulphuraria; genome size Strain(s): 3638  DOI: 10.1080/09670260110001735378 Myint, A. A., Hariyanto, P., Irshad, M., Ruqian, C., Wulandari, S., Hong, M. E., Sim, S. J., Kim, J. 2022 Strategy for high-yield astaxanthin recovery directly from wet Haematococcus pluvialis without pretreatment. Bioresour. Technol., 346, 126616 (article ID). Keywords: Haematococcus pluvialis; Astaxanthin; Wet ball mill extraction; Antioxidant activities Strain(s): 144  PubMed: 34954361 DOI: 10.1016/j.biortech.2021.126616 Nagai, H., Satake, M., Murata, M., Yasumoto, T. 1990 Screening of marine phytoplankton for antifungal substances. In Toxic Marine Phyto-plankton, Eds. by Graneli, E., Sundstrom, B., Edler, L. & Anderson, D. M., Elsevier Science Pub., New York, pp. 385-390. Strain(s): 1,  6,  12,  15  Nagai, M., Hirano, T., Shibata, T. 2019 Phototactic algae-driven unidirectional transport of submillimeter-sized cargo in a microchannel. Micromachines, 10, 130 (article ID). Keywords: microrobot; phototaxis; Volvox; micro-swimmer; biohybrid system; motion control Strain(s): 865  PubMed: 30781488 DOI: 10.3390/mi10020130 Nagai, M., Oguri, M., Shibata, T. 2015 Characterization of light-controlled Volvox as movable microvalve element assembled in multilayer microfluidic device. Jpn. J. Appl. Phys., 54, 067001 (article ID). Strain(s): 865  DOI: 10.7567/JJAP.54.067001 Nagai, T. 2017 Predicting herbicide mixture effects on multiple algal species using mixture toxicity models. Environ. Toxicol. Chem., 36, 2624-2630. Keywords: Pesticide; Species sensitivity distribution; Mixture toxicology; Algae; Mode of action Strain(s): 71,  487,  512,  797  PubMed: 28316094 DOI: 10.1002/etc.3800 Nagai, T. 2020 Sensitivity differences among seven algal species to 12 herbicides with various modes of action. J. Pestic. Sci., 44, 225-232. Keywords: algae; difference in species sensitivity; herbicide Strain(s): 3277  DOI: 10.1584/jpestics.D19-039 Nagai, T., Horio, T., Yokoyama, A., Kamiya, T., Takano, H., Makino, T. 2012 Ecological risk assessment of on-site soil washing with iron(III) chloride in cadmium-contaminated paddy field. Ecotox. Environ. Safe., 80, 84-90. Keywords: Risk assessment; Soil washing; Bioassay; Species sensitivity distribution Strain(s): 35  PubMed: 22377402 DOI: 10.1016/j.ecoenv.2012.02.011 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2005 Limiting nutrients on the growth of bloom-forming cyanobacteria with special focus on iron speciation. Verh. Internat. Verein. Limnol., 29, 949-952. Keywords: limiting nutrient; algal growth potential test; speciation; iron Strain(s): 44,  204  DOI: 10.1080/03680770.2005.11902823 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2006 Effect of iron complexation with dissolved organic matter on the growth of cyanobacteria in a eutrophic lake. Aquat. Microb. Ecol., 44, 231-239. Keywords: dissolved organic matter; DOM; cyanobacteria; iron; organic complexation Strain(s): 44,  204  DOI: 10.3354/ame044231 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2007 Growth characteristics and growth modeling of Microcystis aeruginosa and Planktothrix agardhii under iron limitation. Limnology, 8, 261-270. Keywords: iron; growth rate; uptake rate; model simulation; cyanobacteria Strain(s): 44,  204  DOI: 10.1007/s10201-007-0217-1 Nagai, T., Ishihara, S., Yokoyama, A., Iwafune, T. 2011 Effects of four rice paddy herbicides on algal cell viability and the relationship with population recovery. Environ. Toxicol. Chem., 30, 1898-1905. Keywords: pesticide; ecological risk; flow cytometry; green algae Strain(s): 35  PubMed: 21590715 DOI: 10.1002/etc.582 Nagai, T., Taya, K., Annoh, H., Ishihara, S. 2013 Application of a fluorometric microplate algal toxicity assay for riverine periphytic algal species. Ecotox. Environ. Safe., 94, 37-44. Keywords: Attached algae; In-vivo fluorescence; Pesticides; Species sensitivity distribution Strain(s): 35,  71,  73,  414,  487,  512,  797  DOI: 10.1016/j.ecoenv.2013.04.020 Nagai, T., Taya, K., Yoda, I. 2016 Comparative toxicity of 20 herbicides to 5 periphytic algae and the relationship with mode of action. Environ. Toxicol. Chem., 35, 368-375. Keywords: Attached algae; In-vivo fluorescence; Pesticides; Species sensitivity distribution Strain(s): 71,  487,  512,  797  PubMed: 26174500 DOI: 10.1002/etc.3150 Nagao, M. & Uemura, M. 2006 Cold acclimation of green alga (Charophyceae) Klebsormidium flaccidum phylogenetically related to land plants: freezing tolerance, cell structure and compatible solute composition. Plant Cell Physiol., 47, Suppl., 223. Strain(s): 2408  DOI: 10.14841/jspp.2006.0.796.0 Nagao, M. & Uemura, M. 2007 Isolation of sucrose phosphate and glutamate decarboxylase genes of a green alga Klebsormidium flaccidum associated with cold acclimation. Plant Cell Physiol., 48, Suppl., 237. Strain(s): 2408  DOI: 10.14841/jspp.2007.0.884.0 Nagao, M. & Uemura, M. 2012 Sucrose phosphate phosphatase in the green alga Klebsormidium flaccidum (Streptophyta) lacks an extensive C-terminal domain and differs from that of land plants. Planta, 235, 851-861. Strain(s): 2408  PubMed: 22095241 DOI: 10.1007/s00425-011-1550-5 Nagao, M., Matsui, K., Uemura, M. 2008 Klebsormidium flaccidum, a charophycean green alga, exhibits cold acclimation that is closely associated with compatible solute accumulation and ultrastructural changes. Plant Cell Environ., 31, 872-885. Keywords: amino acid; Charophyceae; freezing tolerance; osmotic strength; soluble sugar; ultrastructure Strain(s): 2408  PubMed: 18315534 DOI: 10.1111/j.1365-3040.2008.01804.x Nagao, R., Ueno, Y., Furutani, M., Kato, K., Shen, J.-R., Akimoto, S. 2023 Biochemical and spectroscopic characterization of PSI‑LHCI from the red alga Cyanidium caldarium. Photosynth. Res., 156, 315–323. Keywords: Cyanidium caldarium; Excitation-energy transfer; PSI-LHCI; Red algae Strain(s): 2137  PubMed: 36781711 DOI: 10.1007/s11120-023-00999-y Nagao, R., Yokono, M., Kato, K., Ueno, Y., Shen, J.-R., Akimoto, S. 2021 High‑light modification of excitation‑energy‑relaxation processes in the green fagellate Euglena gracilis. Photosynth. Res., 149, 303–311. Keywords: Euglena gracilis; Time-resolved fuorescence; Photoprotection; Photosynthesis Strain(s): 48  PubMed: 34037905 DOI: 10.1007/s11120-021-00849-9 Nagarajan, D., Lee, D.-J., Chang, J. 2018 Heterotrophic microalgal cultivation. In Bioreactors for microbial biomass and energy conversion, Eds. by Liao Q., Chang J., Herrmann C., Xia A., Springer, Singapore, pp. 117-160. Strain(s): 144,  227,  2280  DOI: 10.1007/978-981-10-7677-0_4 Nagase, H., Hirooka, T., Ehara, Y., Yamashita, R, Tanimoto, S., Hirata, K., Miyamoto, K. 2005 NOx removal system for exhaust gas using freshwater microalgae. J. Environ. Biotechnol., 5, 37-41 (in Japanese with English summary). Keywords: microalgae; nitrogen oxides; treatment of exhaust gas; NO sensor; reactor Strain(s): 23  Nagase, H., Inthorn, D., Isaji, Y., Oda, A., Hirata, K., Miyamoto, K. 1997 Selective cadmium removal from hard water using NaOH-treated cells of the cyanobacterium Tolypothrix tenuis. J. Ferment. Bioeng., 84, 151-154. Keywords: cyanobacteria; cadmium; calcium; magnecium; hard water; sodium hydroxide Strain(s): 23  DOI: 10.1016/S0922-338X(97)82545-7 Nagase, H., Inthorn, D., Oda, A., Nishimura, J., Kajiwara, Y., Park, M.-O., Hirata, K., Miyamoto, K. 2005 Improvement of selective removal of heavy metals in cyanobacteria by NaOH treatment. J. Biosci. Bioeng., 99, 372-377. Keywords: cyanobacteria; cadmium; zinc; copper; lead; hard water Strain(s): 23,  44  PubMed: 16233804 DOI: 10.1263/jbb.99.372 Nagashima, H. 1994 Natural products of the Cyanidiophyceae. In Evolutionary Pathways and Enigmatic Algae: Cyanidium caldarium (Rhodophyta) and Related Cells, Ed. by Seckbach, J., Kluwer Academic Publishers, Netherlands, pp. 201-214. Strain(s): 3891  DOI: 10.1007/978-94-011-0882-9_16 Nagashima, H. & Fukuda, I. 1983 Floridosides in unicellular hot spring algae. Phytochemistry, 22, 1949-1951. Keywords: Cyanidium caldarium; Chroococcidiopsis sp.; hot spring algae; chemotaxonomy; low MW carbohydrates; floridoside; iso-floridoside; autotroph; heterotroph Strain(s): 250,  2137,  3891  DOI: 10.1016/0031-9422(83)80020-X Nagasoe, S., Toda, S., Shimasaki, Y., Osima, Y., Uchida, T., Honjo, T. 2006 Growth inhibition of Gyrodinium instriatum (Dinophyceae) by Skeletonema costatum (Bacillariophyceae). Afr. J. Mar. Sci., 28, 325-329. Keywords: allelopathy; Gyrodinium instriatum; Skeletonema costatum; species interaction Strain(s): 324  DOI: 10.2989/18142320609504171 Naito, K., Imai, I., Nakahara, H. 2008 Complexation of iron by microbial siderophores and effects of iron chelates on the growth of marine microalgae causing red tides. Phycol. Res., 56, 58-67. Keywords: chelate; growth; iron; microalgae; red tide; siderophore Strain(s): 1  DOI: 10.1111/j.1440-1835.2008.00485.x Naito, K., Suzuki, M., Mito, S., Hasegawa, H., Matsui, M., Imai, I. 2006 Effects of the substances secreted from Closterium aciculare (Charophyceae, Chlorophyta) on the growth of freshwater phytoplankton under iron-deficient conditions. Plankton Benthos Res., 1, 191-199. Keywords: Closterium aciculare; freshwater phytoplankton; growth; iron-complexing ligand; iron-deficient conditions Strain(s): 104,  215,  248,  333,  528  DOI: 10.3800/pbr.1.191 Nakada, T. & Nozaki, H. 2007 Re-evaluation of three Chlorogonium (Volvocales, Chlorophyceae) species based on 18S ribosomal RNA gene phylogeny. Eur. J. Phycol., 42, 177-182. Keywords: Chlorogonium; Chlorophyceae; culture strain; molecular phylogeny; monophyletic species; 18S rRNA; species taxonomy Strain(s): 692,  1357,  1358  DOI: 10.1080/09670260601145816 Nakada, T. & Nozaki, H. 2007 Two species of Chlamydomonas (Volvocales, Chlorophyceae) new to Japan. J. Jpn. Bot., 82, 179-189. Keywords: Chlamydomonas perpusilla; Chlamydomonas pumilio; culture strain; taxonomy Strain(s): 1848,  1849,  1850  Nakada, T. & Nozaki, H. 2009 Taxonomic study of two new genera of fusiform green flagellates, Tabris gen. nov. and Hamakko gen. nov. (Volvocales, Chlorophyceae). J. Phycol., 45, 482-492. Keywords: Chlorogonium; Hamakko gen. nov.; molecular phylogeny; Tabris gen. nov.; taxonomy; ultrastructure; Volvocales Strain(s): 122,  637,  748,  752,  760,  968,  1358,  1359,  1849,  1850,  1869,  2293,  2294,  2295,  4125  PubMed: 27033826 DOI: 10.1111/j.1529-8817.2009.00652.x Nakada, T. & Susanti, H. 2020 Taxonomy and nomenclature of the recently published chlamydomonad genera Ostravamonas and Paludistella (Volvocales, Chlorophyceae). Phytotaxa, 449, 295-298. Strain(s): 4317,  4318  DOI: 10.11646/phytotaxa.449.3.8 Nakada, T. & Tomita, M. 2011 Chlamydomonas neoplanoconvexa nom. nov. and its unique phylogenetic position within Volvocales (Chlorophyceae). Phycol. Res., 59, 194-199. Keywords: Caudivolvoxa; Chlamydomonas neoplanoconvexa nom. nov.; molecular phylogeny; morphology; pyrenoid; Volvocales Strain(s): 2570  DOI: 10.1111/j.1440-1835.2011.00617.x Nakada, T. & Tomita, M. 2017 Morphology and phylogeny of a new wall‐less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae). J. Phycol., 53, 108-117. Keywords: cell wall; contractile vacuoles; Hapalochloris nozakii gen. et sp. nov.; mitochondria; molecular phylogeny; morphology; new species; taxonomy; Volvocale Strain(s): 2254,  2320,  3705,  3760,  3761,  3762,  3763  PubMed: 27767210 DOI: 10.1111/jpy.12484 Nakada, T., Ito, T., Tomita, M. 2016 18S ribosomal RNA gene phylogeny of a colonial volvocalean lineage (Tetrabanaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and its close relatives. J. Jpn. Bot., 91, 345-354. Keywords: 18S rRNA; colonial; green algae; molecular phylogeny; unicellular; Volvocales Strain(s): 418,  456,  460,  474,  541,  544,  545,  564,  566,  571,  654,  666,  721,  725,  728,  735,  737,  867,  877,  879,  880,  881,  882,  883,  1362,  2242,  2246,  2266,  2567,  3388,  4126  Nakada, T., Matsuzaki, R., Krienitz, L., Tomiwa, M., Nozaki, H. 2015 Taxonomic reassessment of strains formerly classified as Chloromonas insignis (Volvocales, Chlorophyceae) and description of Gloeomonas anomalipyrenoides sp. nov. Acta Phytotax. Geobot., 66, 23-33. Keywords: 18S rRNA; Chloromonas; culture strain; Gloeomonas; light microscopy; new species; phycology; phylogeny Strain(s): 447,  3640,  3641,  3642  DOI: 10.18942/apg.KJ00009868503 Nakada, T., Nakazawa, A., Nozaki, H. 2005 Two species of Chlorogonium (Volvocales, Chlorophyceae) from Japan. J. Jpn. Bot., 80, 197-207. Keywords: Chlorogonium; Chlorophyceae; culture strain; distribution; taxonomy Strain(s): 1357,  1358,  1359,  1360  Nakada, T., Nozaki, H., Pröschold, T. 2008 Molecular phylogeny, ultrastructure, and taxonomic revision of Chlorogonium (Chlorophyta): emendation of Chlorogonium and description of Gungnir gen. nov. and Rusalka gen.nov. J. Phycol., 44, 751-760. Keywords: Chlorogonium; Gungnir gen.nov.; molecular phylogeny; morphology; Rusalka gen.nov.; taxonomy; ultrastructure; Volvocales Strain(s): 123,  439,  692,  751,  755,  761,  1357,  1359,  1360,  1869,  4125  DOI: 10.1111/j.1529-8817.2008.00525.x Nakada, T., Nozaki, H., Tomita, M. 2010 Another origin of coloniality in volvocaleans: the phylogenetic position of Pyrobotrys Arnoldi (Spondylomoraceae, Volvocales). J. Eucaryot. Microbiol., 57, 379-382. Keywords: Chlorophyceae; molecular phylogeny; multicellularity Strain(s): 2564  PubMed: 20553352 DOI: 10.1111/j.1550-7408.2010.00488.x Nakada, T., Nozaki, H., Tomita, M. 2012 Light microscopy and phylogenetic analyses of Chlamydomonas species (Volvocales, Chlorophyceae). I. Chlamydomonas pseudomacrostigma and Chlamydomonas media. Acta Phytotax. Geobot., 62, 69-78. Keywords: 18S rRNA; Chlamydomonas media; Chlamydomonas pseudomacrostigma; light microscopy; molecular phylogeny, phycology Strain(s): 2743,  2744  DOI: 10.18942/apg.KJ00008111418 Nakada, T., Shinkawa, H., Ito, T., Tomita, M. 2010 Recharacterization of Chlamydomonas reinhardtii and its relatives with new isolates from Japan. J. Plant Res., 123, 67-78. Keywords: Chlamydomonas reinhardtii; Chlorophyceae; distribution; phycology; species; taxonomy Strain(s): 1708,  1858,  2462,  2463,  2464  PubMed: 19882207 DOI: 10.1007/s10265-009-0266-0 Nakada, T., Soga, T., Tomita, M., Nozaki, H. 2010 Chlorogonium complexum sp. nov. (Volvocales, Chlorophyceae), and morphological evolution of Chlorogonium. Eur. J. Phycol., 45, 97-106. Keywords: Chlorogonium complexum sp. nov.; Chlorophyceae; molecular phylogeny; morphology; pyrenoids; taxonomy Strain(s): 692,  751,  752,  753,  2296,  2297  DOI: 10.1080/09670260903383263 Nakada, T., Suda, S., Nozaki, H. 2007 A taxonomic study of Hafniomonas (Chlorophyceae) based on a comparative examination of cultured material. J. Phycol., 43, 397-411. Keywords: Chlorophyceae; Hafniomonas; morphology; new species; taxonomy Strain(s): 257,  656,  1714,  1715,  1716,  1717,  1718,  1720  DOI: 10.1111/j.1529-8817.2007.00328.x Nakada, T., Tomita, M. 2014 Light microscopy and phylogenetic asalyses of Chlamydomonas species (Volvocales, Chlorophyceae). II. Molecular phylogeny, secondary Microglena opisthopyren, and M. media, comb. nov. Acta Phytotax. Geobot., 65, 67-73. Keywords: Chlamydomonas; ITS-2; Microglena; molecular phylogeny; phycology; synonymy Strain(s): 2743,  2744  DOI: 10.18942/apg.KJ00009406722 Nakada, T., Tomita, M., Nozaki, H. 2010 Volvulina compacta (Volvocaceae, Chlorophyceae), new to Japan, and its phylogenic position. J. Jpn. Bot., 85, 364-369. Keywords: molecular phylogeny; taxonomy; Volvocaceae; Volvulina compacta Strain(s): 2567  Nakada, T., Tomita, M., Wu, J.-T., Nozaki, H. 2016 Taxonomic revision of Chlamydomonas subg. Amphichloris (Volvocales, Chlorophyceae), with resurrection of the genus Dangeardinia and Descriptions of Ixipapillifera gen. nov. and Rhysamphichloris gen. nov. J. Phycol., 52, 283-304. Keywords: Chlamydomonas subg.; Amphichloris; Dangeardinia; Ixipapillifera; mitochondria; molecular phylogeny; morphology; new species; Rhysamphichloris; taxonomy; Volvocales Strain(s): 2320,  2321,  2322,  2575,  3702,  3703,  3704,  3705,  3706,  3707  PubMed: 27037593 DOI: 10.1111/jpy.12397 Nakada, T., Tsuchida, Y., Arakawa, K., Ito, T., Tomita, M. 2014 Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae). Phycol. Res., 62, 232-236. Keywords: biogeography; Chlamydomonas reinhardtii; Chlorophyceae; mating population; species Strain(s): 2463,  2464,  3378,  3379,  3380,  3381  DOI: 10.1111/pre.12061 Nakada, T., Tsuchida, Y., Tomita, M. 2019 Improved taxon sampling and multigene phylogeny of unicellular chlamydomonads closely related to the colonial volvocalean lineage Tetrabaenaceae-Goniaceae-Volvocaceae (Volvocales, Chlorophyceae). Mol. Phylogenet. Evol., 130 1-8. Keywords: Alga; Chlamydomonas; Colony evolution; Multigene phylogeny; Vitreochlamys; Zoosporangium Strain(s): 418,  437,  456,  460,  474,  541,  544,  545,  564,  566,  569,  571,  577,  654,  666,  721,  725,  728,  735,  737,  867,  879,  880,  882,  883,  887,  1362,  1858,  2462,  2567,  3383,  3388,  4241,  4242,  4243,  4244,  4245,  4246,  4247,  4248,  4249,  4250,  4251,  4252,  4253,  4254,  4255,  4256  PubMed: 30266459 DOI: 10.1016/j.ympev.2018.09.013 Nakada,T., Ota, S. 2016 What is the correct name for the type of Haematococcus Flot. (Volvocales, Chlorophyceae)? Taxon, 65, 343-348. Keywords: cryopreservation; epitype; Haematococcus; lectotype Strain(s): 2264  DOI: 10.12705/652.11 Nakagawa, M., Takamura, Y., Yagi, O. 1987 Isolation and characterization of the slime from a cyanobacterium, Microcystis aeruginosa K-3A. Agric. Biol. Chem., 51, 329-337. Strain(s): 604  DOI: 10.1080/00021369.1987.10868065 Nakahara, M., Ito, H., Yano, H., Harimaya, K. 1988 Eutrophication in three reservoirs as the sources of the waterworks in Kobe City. Jpn. J. Water Treat. Biol., 24, 19-24 (in Japanese with English title). Strain(s): 35  Nakai, S., Asaoka, S., Okuda, T., Nishijima, W. 2014 Growth inhibition of Microcystis aeruginosa by allelopathic compounds originally isolated from Myriophyllum spicatum: temperature and light effects and evidence of possible major mechanisms. J. Chem. Eng. Japan, 47, 488-493. Keywords: Allelopathy; Cyanobacterium; Light Intensity Effect; Photosystem II Quantum Yield; Temperature Effect Strain(s): 87  DOI: 10.1252/jcej.13we253 Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 1999 Growth inhibition of blue-green algae by allelopathic effects of macrophytes. Wat. Sci. Tech., 39, 47-53. Keywords: allelopathy; blue-green algae; coexistence; growth inhibition; macrophyte; Myriophyllum spicatum Strain(s): 75,  87,  512  DOI: 10.1016/S0273-1223(99)00185-7 Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 2000 Myriophyllum spicatum-released allelopathic polyphenols inhibiting growth of blue-green algae Microcystis aeruginosa. Water Res., 34, 3026-3032. Keywords: Myriophyllum spicatum; allelochemical; polyphenol; synergistic growth inhibition; autoxidation; blue-green algae Strain(s): 87  DOI: 10.1016/S0043-1354(00)00039-7 Nakai, S., Yamada, S., Hosomi, M. 2004 Cyanobacterial growth inhibition effects of fatty acids released from Myriophyllum spicatum. J. Jpn. Soc. Water Environ., 27, 125-130 (in Japanese with English summary). Keywords: allelochemical; Microcystis aeruginosa; Myriophyllum spicatum; fatty acid; synergistic growth inhibition Strain(s): 87  Nakai, S., Yamada, S., Hosomi, M. 2005 Anti-cyanobacterial fatty acids released from Myriophyllum spicatum. Hydrobiologia, 543, 71-78. Keywords: allelochemical; fatty acid; Microcystis aeruginosa; Myriophyllum spicatum Strain(s): 87  DOI: 10.1007/s10750-004-6822-7 Nakai, S., Yamane, S., Hosomi, M. 2000 Algal growth inhibition effects of Myriophyllum spicatum-releasing four allelopathic polyphenols. J. Jpn. Soc. Wat. Environ., 23, 726-730 (in Japanese with English summary). Keywords: allelochemical; polyphenol; algae; concentration-dependent synergistic growth inhibition; autoxidation Strain(s): 35,  71,  87,  96,  512  Nakai, S., Zou, G., Okuda, T., Tsai, T.-Y., Song, X., Nishijima, W., Okada, M. 2010 Anti-cyanobacterial allelopathic effects of plants used for artificial floating islands. Allelopathy J., 26, 113-122. Keywords: Acorus gramineus; aquatic and terrestrial plants; artificial floating island; Canna generalis; cyanobacterium; growth inhibition; Iris pseudacorus; Lythrum salicaria; Scirpus tabernaemontani; Typha angustifolia Strain(s): 87  Nakai, S., Zou, G., Song, X., Pan, Q., Zhou, S., Hosomi, M. 2008 Release of anti-cyanobacterial allelochemicals from aquatic and terrestrial plants applicable for artificial floating islands. J. Water Environ. Technol., 6, 55-63. Keywords: allelopathy; canna; carboxylic comp.; cyanobacteria; growth inhibition; phenolic comp.; umbrella plant Strain(s): 87  DOI: 10.2965/jwet.2008.55 Nakajima, A., Horikoshi, T., Sakaguchi, T. 1979 Uptake of copper ion by green microalgae. Agric. Biol. Chem., 43, 1455-1460. Strain(s): 2212,  2273,  2274,  2279  DOI: 10.1080/00021369.1979.10863659 Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941. Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors Strain(s): 35,  94,  96,  151,  245,  424,  468,  763  PubMed: 17629547 DOI: 10.1016/j.chemosphere.2007.05.088 Nakajima, T., Takahashi, M. 1991 A photo-bioreactor using algal phototaxis for solids-liquid separation. Water Res., 25, 1243-1247. Keywords: wastewater treatment; microalgae; Euglena gracilis; phototaxis; solids-liquid separation; bioreactor; photo-clarifier Strain(s): 48  DOI: 10.1016/0043-1354(91)90063-V Nakamura, A., Okamoto, T., Komatsu, N., Ooka, S., Oda, T., Ishimatsu, A., Muramatsu, T. 1998 Fish mucus stimulates the generation of superoxide anion by Chattonella marina and Heterosigma akashiwo. Fish. Sci., 64, 866-869. Keywords: red tide plankton; Raphidophyceae; fish mucus; reactive oxygen species Strain(s): 6  DOI: 10.2331/fishsci.64.866 Nakamura, H. 1993 Results of AGP experiments [AGP, T-P, PO4-P no shiken oyobi bunsekikekka]. Unpublished report in Ebara Yujiraito Co. Ltd,. 32 pp. (in Japanese). Strain(s): 35,  101  Nakamura, H. 2019 Water chemical remediation for simultaneous removal of phosphate ion and blue-green algae from anthropogenically eutrophied pond. In Water Chemistry, pp. 1-17. Keywords: resource removal; calcium chloride; phosphorus; water bloom; anthropogenic eutrophication; organic pollution Strain(s): 87  DOI: 10.5772/intechopen.88490 Nakamura, H., Sawada, K., Araie, H., Shiratori, T., Ishida, K-I., Suzuki, I., Shiraiwa, Y. 2016 Composition of long chain alkenones and alkenoates as a function of growth temperature in marine haptophyte Tisochrysis lutea. Org. Geochem., 99, 78-89. Keywords: Alkenones; Chemotaxonomy; Tisochrysis; Isochrysis; UK37 Strain(s): 1000,  2590,  2697  DOI: 10.1016/j.orggeochem.2016.06.006 Nakamura, H., Sawada, K., Araie, H., Suzuki, I., Shiraiwa, Y. 2015 n-Nonacosadienes from the marine haptophytes Emiliania huxleyi and Gephyrocapsa oceanica. Phytochemistry, 111, 107-113. Keywords: Emiliania huxleyi; Gephyrocapsa oceanica; Haptophyte; Nonacosadiene; Noelaerhabdaceae; Long chain alkene; Biomarker Strain(s): 837,  1315  PubMed: 25595675 DOI: 10.1016/j.phytochem.2014.12.023 Nakamura, M., Yamagishi, M., Yoshizaki, F., Sugimura, Y. 1992 The syntheses of plastocyanin and cytochrome c-553 are regulated by copper at the pre-translational level in a green alga, Pediastrum boryanum. J. Biochem., 111, 219-224. Strain(s): 301  PubMed: 1314811 DOI: 10.1093/oxfordjournals.jbchem.a123740 Nakamura, M., Yoshizaki, F., Sugimura, Y. 2000 Accumulation of plastocyanin mRNA lacking 5' region in the green alga Pediastrum boryanum grown under copper-deficient conditions. Plant Cell Physiol., 41, 33-41. Keywords: cDNA sequence; copper regulation; green alga; mRNA accumulation; Pediastrum boryanum; plastocyanin Strain(s): 301  PubMed: 10750706 DOI: 10.1093/pcp/41.1.33 Nakamura, Y. 1983 Change in molecular weight distribution in starch when degraded at different temperatures in Chlorella vulgaris. Plant Sci. Lett., 30, 259-265. Keywords: Chlorella; photosynthetic CO2 fixation; starch metabolism; temperature Strain(s): 2160  DOI: 10.1016/0304-4211(83)90164-5 Nakamura, Y. 1987 Effects of growth conditions on nitrate, ammonium and phosphate uptake by Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 115-126 (in Japanese with English summary). Strain(s): 1  Nakamura, Y. 1998 Growth and grazing of a large heterotrophic dinoflagellate, Noctiluca scintillans, in laboratory cultures. J. Plankton Res., 20, 1711-1720 Strain(s): 2,  7,  440  DOI: 10.1093/plankt/20.9.1711 Nakamura, Y. & Imamura, M. 1983 Change in properties of starch when photosynthesized at different temperature in Chlorella vulgaris. Plant Sci. Lett., 31, 123-131. Keywords: Chlorella; photosynthetic CO2 fixation; starch metabolism; temperature Strain(s): 2160  DOI: 10.1016/0304-4211(83)90048-2 Nakamura, Y. & Imamura, M. 1983 Characteristics of a-glucan phosphorylase from Chlorella vulgaris. Phytochemistry, 22, 835-840. Keywords: Chlorella vulgaris; Chlorophyceae; phospholyrase; starch; ADP-glucose; UDP-glucose Strain(s): 2160  DOI: 10.1016/0031-9422(83)85008-0 Nakamura, Y. & Imamura, M. 1983 Characterization of Chlorella phosphorylase: the glucan specificity and effect of temperature. Phytochemistry, 22, 2395-2399. Keywords: Chlorella vulgaris; Chlorophyceae; phosphorylase; photosynthesis; starch; temperature Strain(s): 2160  DOI: 10.1016/0031-9422(83)80126-5 Nakamura, Y. & Imamura, M. 1985 Regulation of ADP-glucose pyrophosphorylase from Chlorella vulgaris. Plant Physiol., 78, 601-605. Strain(s): 2160  PubMed: 16664290 DOI: 10.1104/pp.78.3.601 Nakamura, Y. & iyachi, S. 1977 Conversion of glucose-polymer to sucrose in Chlorella induced by high temperature. In Biological Solar Energy Conversion, Eds. by Mitsui, A. et al., Academic Press, New York, pp. 203-212. Strain(s): 2160  Nakamura, Y. & Miyachi, S. 1980 Effects of temperature and CO2 concentration on photosynthetic CO2 fixation by Chlorella. Plant Cell Physiol., 21, 765-774. Keywords: Chlorella; CO2 fixation; glucose-polymer; glycolate; sucrose; temperature Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a076051 Nakamura, Y. & Miyachi, S. 1980 Effects of temperature on glycolate metabolism in Chlorella. Plant Cell Physiol., 21, 1541-1549. Keywords: Chlorella; CO2 fixation; glucose-polymer; glycolate; sucrose; temperature Strain(s): 2160  DOI: 10.1093/pcp/21.8.1541 Nakamura, Y. & Miyachi, S. 1982 Changes in starch photosynthesized at different temperature in Chlorella. Plant Sci. Lett., 27, 1-6. Strain(s): 2160  DOI: 10.1016/0304-4211(82)90065-7 Nakamura, Y. & Miyachi, S. 1982 Effect of temperature on starch degradation in Chlorella vulgaris 11h cells. Plant Cell Physiol., 23, 333-341. Keywords: Chlorella vulgaris; CO2 fixation; starch; sucrose; temperature (starch degradation) Strain(s): 2160  Nakamura, Y. & Watanabe, M. M. 1983 Growth characteristics of Chattonella antiqua Part 2. Effects of nutrients on growth. J. Oceanogr. Soc. Japan, 39, 151-155. Strain(s): 1  DOI: 10.1007/BF02070258 Nakamura, Y. & Watanabe, M. M. 1983 Growth characteristics of Chattonella antiqua (Raphidophyceae). Part 1. Effects of temperature, salinity, light intensity and pH on growth. J. Oceanogr. Soc. Japan, 39, 110-114. Strain(s): 1  Nakamura, Y. & Watanabe, M. M. 1983 Nitrate and phosphate uptake kinetics of Chattonella antiqua grown in light/dark cycles. J. Oceanogr. Soc. Japan, 39, 167-170. Strain(s): 1  DOI: 10.1007/BF02070260 Nakamura, Y. & Watanabe, M. M. 1984 Diurnal vertical migration of a red tide flagellate, Chattonella antiqua with special reference to the ecological role. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 97-102 (in Japanese with English summary). Strain(s): 1  Nakamura, Y. & Watanabe, M. M. 1984 Effects of nutrients on the growth of Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 87-95 (in Japanese with English summary). Strain(s): 1  Nakamura, Y. & Watanabe, M. M. 1984 Effects of temperature, salinity, light intensity and pH on the growth of Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 79-85 (in Japanese with English summary). Strain(s): 1  Nakamura, Y. & Watanabe, M. M. 1984 Nitrate and phosphate uptake kinetics of Chattonella antiqua grown in light/dark cycles. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 103-109 (in Japanese with English summary). Strain(s): 1  Nakamura, Y., Sawai, K., Mochida, M., Watanabe, M. 1987 An approach to estimate the limiting nutrient of Chattonella antiqua in the Seto Inland Sea - Semicontinuous culture using natural seawater. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 197-212 (in Japanese with English summary). Strain(s): 1  Nakamura, Y., Sawai, K., Watanabe, M. 1987 Growth inhibition of a red tide flagellate, Chattonella antiqua by cupric ion. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 127-138 (in Japanese with English summary). Strain(s): 1  Nakamura, Y., Takahashi, J-I., Sakurai, A., Inaba, Y., Suzuki, E., Nihei, S., Fujiwara, S., Tsuzuki, M., Miyashita, H., Ikemoto, H., Kawachi, M., Sekiguchi, H., Kurano, N. 2005 Some Cyanobacteria synthesize semi-amylopectin type α-polyglucans instead of glycogen. Plant Cell Physiol., 46, 539-545. Keywords: Amylopectin; Cyanobacteria; Glycogen; α-Polyglucan; Starch Strain(s): 36,  592  PubMed: 15695453 DOI: 10.1093/pcp/pci045 Nakamura, Y., Watanabe, M. M., Watanabe, M. 1982 The effect of various environmental factors on the growth yield of red tide algae. I. Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 53-70 (in Japanese with English summary). Strain(s): 1  Nakane, D., Enomoto, G., Bäehre, H., Hirose, Y., Wilde, A., Nishizaka, T. 2022 Thermosynechococcus switches the direction of phototaxis by a c-di-GMP-dependent process with high spatial resolution. eLife, 11, e73405 (article ID). Strain(s): 2134  PubMed: 35535498 DOI: 10.7554/eLife.73405 Nakanishi, A., Iritani, K., Sakihama, Y., Ozawa, N., Mochizuki, A., Watanabe, M. 2020 Construction of cell-plastics as neo-plastics consisted of cell-layer provided green alga Chlamydomonas reinhardtii covered by two-dimensional polymer. AMB Express, 10, 112 (article ID). Keywords: Chlamydomonas reinhardtii; Two-dimensional polymer; Stacking structure; Cell-plastics Strain(s): 2235  PubMed: 32524300 DOI: 10.1186/s13568-020-01046-y Nakanishi, A., Iritani, K., Sakihama, Y., Watanabe, M. 2020 Investigation of the mechanical strength of cell-plastics fabricated using unicellular green algal cells and varying weight ratios of biodegradable polybutylene succinate. Int. J. Microbiol. Biotechnol., 5, 159-164. Keywords: Cell-plastics; Green Alga; Chlamydomonas reinhardtii; Polybutylene Succinate (PBS); Biodegradable Strain(s): 2239  DOI: 10.11648.j.ijmb.20200504.11 Nakanishi, A., Iritani, K., Sakihama, Y., Watanabe, M., Mochiduki, A., Tsuruta, A., Sakamoto, S., Ota, A. 2021 Fabrication and biodegradability of starch cell-plastics as recyclable resources. Appl. Sci., 11, 847 (article ID). Keywords: cell-plastics; biodegradability; unicellular green alga; green plastics Strain(s): 2235  DOI: 10.3390/app11020847 Nakanishi, A., Iritani, K., Tsuruta, A., Yamamoto, N., Watanabe, M., Ozawa, N., Watanabe, M., Zhang, K., Tokudome, A. 2022 Fabrication of cell plastics composed only of unicellular green alga Chlamydomonas reinhardtii as a raw material. Photosynth. Res., 106, 4459–4468. Keywords: Biomass plastics; Cell plastics; Carbon recycling; Green algae; Chlamydomonas reinhardtii; Intracellular contents Strain(s): 2235  PubMed: 35676378 DOI: 10.1007/s00253-022-12000-2 Nakanishi, A., Nemoto, S., Yamamoto, N., Iritani, K., Watanabe, M. 2023 Identification of cell-attachment factors derived from green algal cells disrupted by sonication in fabrication of cell plastics. Bioengineering-Basel, 10, 893 (article ID). Keywords: cell plastics; unicellular green algae; attachment factors in matrices; proteomics Strain(s): 2235  PubMed: 37627778 DOI: 10.3390/bioengineering10080893 Nakanishi, K., Deuchi, K., Kuwano, K. 2012 Cryopreservation of four valuable strains of microalgae, including viability and characteristics during 15 years of cryostorage. J. Appl. Phycol., 24, 1381-1385. Keywords: Cryopreservation; Cryoprotectant; Chlorella vulgaris; Nannochloropsis oculata; Tetraselmis tetrathele; Chlorophyll Strain(s): 2145,  2170  DOI: 10.1007/s10811-012-9790-8 Nakanishi, K., Karube, I., Hiroshi, S., Uchida, A., Ishida, Y. 1996 Detection of the red tide-causing plankton Chattonella marina using a piezoelectric immunosensor. Anal. Chim. Acta, 325, 73-80. Keywords: red tide; Chattonella marina; monoclonal antibody; piezoelectric sensors Strain(s): 121  DOI: 10.1016/0003-2670(96)00006-2 Nakano, S., Chang, K.-H., Shijima, A., Miyamoto, H., Sato, Y., Noto, Y., Ha, J.-Y., Sakamoto, M. 2014 A usage of CO2 hydrate: Convenient method to increase CO2 concentration in culturing algae. Bioresour. Technol., 172, 444-448. Keywords: CO 2; Algal culture; Pseudokirchneriella; Population growth Strain(s): 35  PubMed: 25263943 DOI: 10.1016/j.biortech.2014.09.019 Nakano, T. & Isagi, Y. 1987 Dictyochloropsis irregularis sp. nov. (Chlorococcales, Chloro-phyceae) isolated from the surface of bark Phycologia, 26, 222-227. Strain(s): 378  DOI: 10.2216/i0031-8884-26-2-222.1 Nakashima, T., Miyazaki, Y., Matsuyama, Y., Muraoka, W., Yamaguchi, K., Oda, T. 2006 Producing mechanism of an algicidal compound against red tide phytoplankton in a marine bacterium γ-proteobacterium. Appl. Microbiol. Biotechnol., 73, 684-690. Keywords: Algal activity; Harmful algal bloom; Prodigiosin; γ-proteobacterium; Homoserine lactone Strain(s): 6  PubMed: 16850298 DOI: 10.1007/s00253-006-0507-2 Nakashima, Y., Egami, Y., Kimura, M., Wakimoto, T. 2016 Metagenomic analysis of the sponge Discodermia reveals the production of the cyanobacterial natural product kasumigamide by ‘Entotheonella’. PLoS One, 11, e0164468 (article ID). Strain(s): 87  PubMed: 27732651 DOI: 10.1371/journal.pone.0164468 Nakasugi, K., Alexova, R., Svenson, C. J., Neilan, B. A. 2007 Functional Analysis of PilT from the Toxic Cyanobacterium Microcystis aeruginosa PCC 7806. J. Bacteriol., 189, 1689-1697. Strain(s): 102  PubMed: 17172325 DOI: 10.1128/JB.01640-06 Nakayama, T., Ishii, E., Kanazawa, H. 1987 The study on the isolation and culture of the protoplast from heterothallic Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 14, 95-114. Strain(s): 64,  65  Nakayama, T., Marin, B., Kranz, H. D., Surek, B., Huss, V. A. R., Inouye, I., Melkonian, M. 1998 The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences. Protist, 149, 367-380. Strain(s): 221,  251  DOI: 10.1016/S1434-4610(98)70043-4 Nakayama, T., Nakamura, A., Yokoyama, A., Shiratori, T., Inouye, I., Ishida, K-I. 2015 Taxonomic study of a new eustigmatophycean alga, Vacuoliviride crystalliferum gen. et so. nov. J. Plant Res., 128, 249-257. Keywords: Eustigmatophyceae; Phylogeny; Taxonomy; Vacuoliviride crystalliferum gen. et so. nov. Strain(s): 2860  PubMed: 25516501 DOI: 10.1007/s10265-014-0686-3 Nakayama, T., Suda, S., Kawachi, M., Inouye, I. 2007 Phylogeny and ultrastructure of Nephroselmis and Pseudoscourfieldia (Chlorophyta), including the description of Nephroselmis anterostigmatica sp. nov. and a proposal for the Nephroselmidales ord. nov. Phycologia, 46, 680-697. Keywords: 18S rDNA; hair scales; Nephroselmidales ord nov.; Nephroselmis anterostigmatica sp. nov.; phylogeny; Prasinophyceae; Pseudoscourfieldia marina; taxonomy; ultrastructure Strain(s): 252,  935  DOI: 10.2216/04-25.1 Nakayama, T., Watanabe, S., Inouye, I. 1996 Phylogeny of wall-less green flagellates inferred from 18SrDNA sequence data. Phycol. Res., 44, 151-161. Keywords: 18SrDNA; Chaetopeltidales; Chaetophorales; Chlorophyceae; Dunaliellales, Hafniomonas; molecular phylogeny; Oltmannsiellopsis; Polytomella Strain(s): 360  DOI: 10.1111/j.1440-1835.1996.tb00044.x Nakayama, T., Yoshida, M., Noël, M.-H., Kawachi, M., Inouye, I. 2005 Ultrastructure and phylogenetic position of Chrysoculter rhomboideus gen. et sp.nov. (Prymnesiophyceae), a new flagellate haptophyte from Japanese coastal waters. Phycologia, 44, 369-383. Strain(s): 1874  DOI: 10.2216/0031-8884(2005)44[369:UAPPOC]2.0.CO;2 Nakazawa, A. & Nishii, I. 2012 Amidic and acetonic cryoprotectants improve cryopreservation of volvocine green algae. CryoLetters, 33, 201-212. Keywords: cryopreservation; dimethylformamide; hydroxyacetone; Volvocaceae; Volvox; Chlamydomonas Strain(s): 418,  468,  545,  564,  574,  717,  721,  728,  729,  730,  731,  1331,  1361,  1710,  2236  PubMed: 22825787 Nakazawa, A. & Nozaki, H. 2000 Morphology and asexual reproduction of Vitreochlamys aulata (Volvocales, Chlorophyceae). J. Jpn. Bot., 75, 42-46. Keywords: asexual reproduction; Chlorophyceae; morphology; Sphaerellopsis; Vitreochlamys aulata Strain(s): 875  Nakazawa, A. & Nozaki, H. 2004 Phylogenetic analysis of the Tetrasporalean genus Asterococcus (Chlorophyceae) based on 18S ribosomal RNA gene sequences. J. Jpn. Bot., 79, 255-261. Keywords: 18S rRNA gene; Asterococcus; Palmellopsidaceae; phylogeny; Tetrasporales Strain(s): 257,  656  Nakazawa, A., Krienitz, L., Nozaki, H. 2001 Taxonomy of the unicellular green algal genus Vitreochlamys (Volvocales), based on comparative morphology of cultured material. Eur. J. Phycol., 36, 113-128. Keywords: Chlorophyta; comparative morphology; rbcL (large subunit of Rubisco, ribulose-1,5-bisphosphate carboxylase/oxygenase); Sphaerellopsis; taxonomy; ultrastructure; Vitreochlamys; Vitreochlamys pinguis; Volvocales Strain(s): 875,  876,  877,  878,  879,  880,  881,  882,  883  DOI: 10.1017/S0967026201003183 Nakazawa, A., Yamada, T., Nozaki, H. 2004 Taxonomic study of Asterococcus (Chlorophyceae) based on comparative morphology and rbcL gene sequences. Phycologia, 43, 711-721. Strain(s): 1331  DOI: 10.2216/i0031-8884-43-6-711.1 Naknaen, A., Ratsameepakai, W., Suttinun, O., Sukpondma, Y., Khan, E., Pomwised, R. 2021 Microcystis sp. co-producing microcystin and saxitoxin from Songkhla Lake Basin, Thailand. Toxins, 13, 631 (article ID). Keywords: Songkhla Lake Basin; Microcystis; extracellular polymeric substances; microcystins; saxitoxin Strain(s): 843  PubMed: 34564635 DOI: 10.3390/toxins13090631 Naohara, T. & Ishikawa, H. 1975 Assay of the activity of herbicides using Chlorella. Zassô-Kenkyû, 20, 82-86 (in Japanese with English summary). Strain(s): 226  Nara, M., Shiraiwa, Y., Hirokawa, T. 1989 Changes in the carbonic anhydrase activity and the rate of photosynthetic O2 evolution during the cell cycle of Chlorella ellipsoidea C-27. Plant Cell Physiol., 30, 267-275. Keywords: carbonic anhydrase; cell cycle; Chlorella; CO2 concentration; photosynthesis; synchronous culture Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a077739 Natsuike, M., Endo, Y., Ito, H., Miyamoto, M., Yoshimura, C., Fujii, M. 2020 Iron uptake kinetics by coastal micro- and macro-algae in relation to riverine and coastal organic matter. Estuar. Coast. Shelf Sci., 235, 106580 (article ID). Keywords: Iron; Organic matter; Emission excitation matrix (EEM); Coastal waters; Fulvic acid Strain(s): 323  DOI: 10.1016/j.ecss.2019.106580 Nazifi, E., Wada, N., Asano, T., Nishiuchi, T., Iwamuro, Y., Chinaka, S., Matsugo, S., Sakamoto, T. 2015 Characterization of the chemical diversity of glycosylated mycosporine-like amino acids in the terrestrial cyanobacterium Nostoc commune. J. Photochem. Photobiol. B-Biol., 142, 154-168. Strain(s): 2538,  3989  PubMed: 25543549 DOI: 10.1016/j.jphotobiol.2014.12.008 Nazipova, A., Makshakova, O., Kozlova, L. 2023 The in silico characterization of monocotyledonous α-L-Arabinofuranosidases on the example of maize. Life-Basel, 13, 266 (article ID). Keywords: α-L-arabinofuranosidase; arabinoxylan; maize; homology modeling; molecular docking Strain(s): 2285  PubMed: 36836625 DOI: 10.3390/life13020266 Nedelcu, A. M., Borza, T., Lee, R. W. 2006 A land-plant specific multigene family in the unicellular Mesostigma argues for its close relationship to Streptophyta. Mol. Biol. Evol., 23, 1011-1015. Keywords: Mesostigma viride; land plant evolution; Streptophyta; histogenetic meristem; gene family Strain(s): 296  PubMed: 16476689 DOI: 10.1093/molbev/msj108 Nef, C., Madoui, M., Pelletier, É., Bowler, C. 2022 Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros. PLoS. Biol., 20, e3001893 (article ID). Strain(s): 3715  PubMed: 36441816 DOI: 10.1371/journal.pbio.3001893 Neilan, B. A., Cox, P. T., Hawkins, P. R., Goodman, A. E. 1994 16S ribosomal RNA gene sequence and phylogeny of toxic Microcystis sp. (Cyanobacteria). DNA Seq., 4, 333-337. Keywords: Cyanobacteria; Microcystis; 165 rRNA gene; DNA sequence; taxonomy; phylogeny Strain(s): 89  DOI: 10.3109/10425179409020861 Neilan, B. A., Dittmann, E., Rouhiainen, L., Bass, R. A., Schaub, V., Sivonen, K., Börner, T. 1999 Nonribosomal peptide synthesis and toxigenicity of Cyanobacteria. J. Bacteriol., 181, 4089-4097. Strain(s): 19,  24,  81,  99,  102,  107,  204  PubMed: 10383979 DOI: 10.1128/JB.181.13.4089-4097.1999 Neilan, B. A., Hawkins, P. R., Cox, P. T., Goodman, A. E. 1994 Towards a molecular taxonomy for the bloom-forming cyanobacteria. Aust. J. Mar. Freshwater Res., 45, 869-873. Keywords: 16S rRNA; PCR; Microcystis; Anabaena; DNA sequence Strain(s): 41,  78,  89,  102,  107,  111  DOI: 10.1071/MF9940869 Neilan, B. A., Jacobs, D., Goodman, A. E. 1995 Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus. Appl. Environ. Microbiol., 61, 3875-3883. Strain(s): 24,  40,  41,  44,  73,  76,  78,  80,  81,  87,  89,  98,  102,  107,  111,  112,  204,  207,  298  PubMed: 8526499 Nemjová, K., Neustupa, J., Šťastný, J., Škaloud, P., Veselá, J. 2011 Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata. Phycol. Res., 59, 208-220. Keywords: cryptic diversity; Desmidiales; geometric morphometrics Micrasterias truncata; small subunit rDNA; species concept; trnGUCC intron Strain(s): 783,  784  DOI: 10.1111/j.1440-1835.2011.00619.x Ng, F.-L., Phang, S.-M., Iwamoto, M., Manaka, T., Thong, C.-H., Shimosawa, K., Periasamy, V., Kumar, G. G., Yunus, K., Fisher, A. C. 2020 Algal biophotovoltaic devices: Surface potential studies. ACS Sustain. Chem. Eng., 8, 10511-10520. Keywords: Algal biophotovoltaic device; Bioelectricity; Biotechnology; Surface potential; Algal biofilm Strain(s): 642  DOI: 10.1021/acssuschemeng.0c02831 Ngoc, N.M.,　Inoue, Y., Yokota, K. 2017 Ultrasonic extraction method for quantifying bioavailable phosphorus in particulate form. J. Environ. Chem. Eng., 5, 2498-2507. Keywords: Particulate phosphorus; Ultrasonic extraction; NaOH extraction; Algal growth potential; Bioavailable phosphorus; Microcystis aeruginosa Strain(s): 44  DOI: 10.1016/j.jece.2017.04.047 Ngoc, N.M.,　Yokota, K., James, M., Inoue, Y. 2017 The estimation of bioavailable phosphorus in particulate forms by ultrasonic treatment. J. Environ. Chem. Eng., 31, 492-497. Keywords: algal growth potential test; bioavailable phosphorus; Microcystis aeruginosa; particulate phosphorus; ultrasonic extraction Strain(s): 44  DOI: 10.1111/wej.12270 Nichol, B. E., Budd, K., Palmer, G. R., MacArthur, D. 1987 The mechanisms of fluoride toxicity and fluoride resistance in Synechococcus leopoliensis (Cyanophyceae). J. Phycol., 23, 535-541. Keywords: acidification; bluegreen algae; Cyanophyta; fluoride; phytoplankton; tolerance; toxicity Strain(s): 3277  DOI: 10.1111/j.1529-8817.1987.tb04202.x Nichols, P. D., Volkman, J. K., Hallegraeff, G. M., Blackburn, S. I. 1987 Sterols and fatty acids of the red tide flagellates Heterosigma akashiwo and Chattonella antiqua (Raphidophyceae). Phytochemistry, 26, 2537-2541. Keywords: Heterosigma akashiwo; Chattonella antiqua; algae; Raphidophyceae; lipids; fatty acids; sterols; chemotaxonomy; red tides Strain(s): 1  DOI: 10.1016/S0031-9422(00)83871-6 Nihei, T. 1957 A phosphorylative process, accompanied by photochemical liberation of oxygen, occurring at the stage of nuclear division in Chlorella cell. II. J. Biochem., 44, 389-396. Strain(s): 2170  Nihei, T., Sasa, T., Miyachi, S., Suzuki, K., Tamiya, H. 1954 Change of photosynthetic activity of Chlorella cells during the course of their normal life cycle. Arch. Mikrobiol., 21, 156-166. Strain(s): 2170  PubMed: 14350639 Niiyama, Y. 1996 Morphology and systematics of Anabaena strains in National Science Museum. Jpn. J. Phycol. (Sôrui), 44, 1-8 (in Japanese with English summary). Keywords: akinetes; algal strain; Anabaena; heterocytes; vegetative cells Strain(s): 808,  809,  810,  811,  812,  813,  814,  819,  820,  821,  822,  825,  826,  827,  1639,  1640,  1641,  1652,  1653,  1655,  1670,  1671,  1672,  1673,  1677,  1680,  1695  Niiyama, Y., Tuji, A., Takemoto, K., Ichise, S. 2016 Pseudanabaena foetida sp. nov. and P. subfoetida sp. nov. (Cyanophyta/ Cyanobacteria) producing 2–methylisoborneol from Japan. Fottea, 16, 1-11. Keywords: Lake Biwa; Lake Kasumigaura; 2–methylisoborneol (2–MIB); Phormidium tenue; Pseudanabaena foetida; Pseudanabaena subfoetida; Pseudanabaenaceae; PTB; PTG; 16S rRNA gene Strain(s): 4059  DOI: 10.5507/fot.2016.006 Niiyama, Y., Tuji, A., Tsujimura, S. 2011 Umezakia natans M.WATAN. does not belong to Stigonemataceae but to Nostocaceae. Fottea, 11, 163-169. Keywords: Anabaena bergii; Aphanizomenon ovalisporum; Nostocaceae; Stigonemataceae; Umezakia natans; 16S rDNA Strain(s): 2665  DOI: 10.5507/FOT.2011.016 Niki, T., Kunugi, M., Otsuki, A. 2000 DMSP-lyase activity in five marine phytoplankton species: its potential importance in DMS production. Mar. Biol., 136, 759-764. Strain(s): 6,  7,  353  DOI: 10.1007/s0022799002 Niki, T., Shimizu, M., Fujishiro, A., Kinoshita, J. 2007 Effects of salinity downshock on dimethylsulfide production. J. Oceanogr., 63, 873-877. Keywords: DMS; DMSP; DMSP lyase activity; salinity Strain(s): 7  DOI: 10.1007/s10872-007-0074-x Nikulin, V. Y., Nikulin, A. Y., Gontcharov, A. A., Bagmet, V. B., Abdullin, S. R. 2023 Oogamochlamys kurilensis sp. nov. (Chlorophyta, Volvocales) from the soils of Iturup Island (Sakhalin Region, Russia). Plants-Basel, 12, 3350 (article ID). Keywords: biflagellate green alga; Oogamochlamys; new species; SSU rDNA; ITS rDNA secondary structure; morphological characteristics; life cycle; temperate monsoon climate zone Strain(s): 1716,  1720,  2209,  2210,  2233,  2240,  2294,  2317,  2318,  2320,  3572,  3760  PubMed: 37836090 DOI: 10.3390/plants12193350 Ninomiya, K., Ogino, C., Kawabata, S., Kitamura, K., Maki, T., Hasegawa, H., Shimizu, N. 2013 Ultrasonic inactivation of Microcystis aeruginosa in the presence of TiO2 particles. J. Biosci. Bioeng., 116, 214-218. Keywords: Ultrasaound; Titanium dioxide; Disinfection; Microcystis aeruginosa; Hydroxyl radicals Strain(s): 44  PubMed: 23567151 DOI: 10.1016/j.jbiosc.2013.02.006 Nishi, K. 2023 Development of advanced light-tolerant microalgae-nitrifying bacteria consortia for ammonia removal under strong light irradiation using light-shielding hydrogel. PhD thesis, Soka University, Japan, 94 pp. Strain(s): 2173  Nishi, K., Akizuki, S., Toda, T., Matsuyama, T., Ida, J. 2022 Advanced light-tolerant microalgae-nitrifying bacteria consortia for stable ammonia removal under strong light irradiation using light-shielding hydrogel. Chemosphere, 297, 134252 (article ID). Keywords: Microalgae–nitrifying bacteria consortia; Photoinhibition; Light-shielding; Free ammonia; Immobilisation Strain(s): 2173  PubMed: 35271892 DOI: 10.1016/j.chemosphere.2022.134252 Nishibe, Y., Kawabata, Z., Nakano, S. 2002 Grazing on Microcystis aeruginosa by the heterotrophic flagellate Collodictyon triciliatum in a hypertrophic pond. Aquat. Microb. Ecol., 29, 173-179. Keywords: Microcystis aeruginosa; heterotrophic flagellate; digestion; grazing rate Strain(s): 298  DOI: 10.3354/ame029173 Nishibori, N., Niitsu, M., Fujihara, S., Sagara, T., Nishio, S., Imai, I. 2009 Occurrence of the polyamines caldopentamine and homocaldopentamine in axenic cultures of the red tide flagellates Chattonella antiqua and Heterosigma akashiwo (Raphidophyceae). FEMS Microbiol. Lett., 298, 74-78. Keywords: caldopentamine; homocaldopentamine; Chattonella antiqua; Heterosigma akashiwo Strain(s): 1,  6  DOI: 10.1111/j.1574-6968.2009.01701.x Nishida, K., Takahara M., Miyagishima S., Kuroiwa H., Matsuzaki M., Kuroiwa, T. 2003 Dynamic recruitment of dynamin for final mitochondrial severance in a red alga. Proc. Nati. Acad. Sci. U. S. A., 100, 2146-2151. Strain(s): 3377  PubMed: 12566569 DOI: 10.1073/pnas.0436886100 Nishida, K., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2005 Cell cycle-regulated, microtubule-independent organelle division in Cyanidioschyzon merolae. Mol. Biol. Cell, 16, 2493-2502. Strain(s): 3377  PubMed: 15772156 DOI: 10.1091/mbc.E05-01-0068 Nishida, K., Yagisawa, F., Kuroiwa, H., Yoshida, Y., Kuroiwa, T. 2007 WD40 protein Mda1 is purified with Dnm1 and forms a dividing ring for mitochondria before Dnm1 in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 104, 4736-4741. Strain(s): 3377  PubMed: 17360593 DOI: 10.1073/pnas.0609364104 Nishida, T., Tsutsumi, Y., Kemi, M., Haneda, T., Okamura, H. 1999 Decolorization of anthraquinone dyes by white-rot fungi and its related enzymes. J. Jpn. Soc. Wat. Environ., 22, 465-471 (in Japanese with English summary). Keywords: anthraquinone dye; white-rot fungi; laccase; decolorization; toxicity Strain(s): 35  Nishihara, H., Miwa, H., Watanabe, M., Nagashima, M., Yagi, O., Takamura, Y. 1997 Random amplified polymorphic DNA (RAPD) analyses for discriminating genotypes of Microcystis cyanobacteria. Biosci. Biotechnol. Biochem., 61, 1067-1072. Keywords: RAPD analysis; DNA polymorphism; Microcystis; cyanobacterium; allozyme genotype Strain(s): 1061,  1067,  1068,  1076,  1077,  1090,  1091,  1105,  1122,  1133,  1142,  1164  PubMed: 9255968 DOI: 10.1271/bbb.61.1067 Nishiida, K., Misumi, O., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2004 Triple Immunofluorescent Labeling of FtsZ, Dynamin, and EF-Tu revealed a loose association between the inner and outer membrane mitochondrial division machinery in the red alga Cyanidioschyzon merolae. J. Histochem. Cytochem., 52, 843-849. Keywords: FtsZ; dynamin; elongation factor; Tu; mitochondrial division; Cyanidioschyzon merolae; Alexa; triple immunofluorescence Strain(s): 3377  PubMed: 15208351 DOI: 10.1369/jhc.4C6315.2004 Nishimura, M. & Huzisige, H. 1959 Studies on the chlorophyll formation in Euglena gracilis with special reference to the action spectrum of the process. J. Biochem., 46, 225-234. Strain(s): 49  Nishimura, T., Hariganeya, N., Tawong, W., Sakanari, H., Yamaguchi, H., Adachi, M. 2016 Quantitative PCR assay for detection and enumeration of ciguatera-causing dinoflagellate Gambierdiscus spp. (Gonyaulacales) in coastal areas of Japan. Harmful Algae, 52, 11-22. Keywords: Ciguatera fish poisoning; Dinoflagellate; Gambierdiscus; Japan: Quantitative PCR assay Strain(s): 4118,  4119,  4120  PubMed: 28073467 DOI: 10.1016/j.hal.2015.11.018 Nishimura, T., Pachpande, R. R., Iwamura, T. 1988 A heterotrophic synchlonous culture of Chlorella. Cell Struct. Funct., 13, 207-215. Strain(s): 2170  Nishimura, T., Sato, S., Tawong, W., Sakanari, H., Uehara, K., Shah, M.M., Suda, S., Yasumoto, T., Taira, Y., Yamaguchi, H., Adachi, M. 2013 Genetic diversity and distribution of the ciguatera-causing dinoflagellate Gambierdiscus spp. (Dinophyceae) in coastal areas of Japan. PLoS One, 8, e60882 (article ID). Strain(s): 4118,  4119,  4120  PubMed: 23593339 DOI: 10.1371/journal.pone.0060882 Nishimura, T., Sato, S., Tawong, W., Sakanari, H., Yamaguchi, H., Adachi, M. 2014 Morphology of Gambierdiscus scabrosus sp. nov. (Gonyaulacales): a new epiphytic toxic dinoflagellate from coastal areas of Japan. J. Phycol., 50, 506-514. Keywords: ciguatera fish poisoning; epiphytic; dinoflagellate; Gambierdiscus scabrosus; Japan; LM; morphology; SEM; taxonomy Strain(s): 4118  PubMed: 26988323 DOI: 10.1111/jpy.12175 Nishimura, T., Uchida, H., Noguchi, R., Oikawa, H., Suzuki, T., Funaki, H., Ihara, C., Hagino, K., Arimitsu, S., Tanii, Y., Abe, S., Hashimoto, K., Mimura, K., Tanaka, K., Yanagida, I., Adachi, M. 2020 Abundance of the benthic dinoflagellate Prorocentrum and the diversity, distribution, and diarrhetic shellfish toxin production of Prorocentrum lima complex and P. caipirignum in Japan. Harmful Algae, 96, 101687 (article ID). Keywords: Dinoflagellate; Dinophysistoxin-1; Okadaic acid; Phylogeny; Prorocentrum caipirignum; Prorocentrum lima complex Strain(s): 4554,  4555,  4557,  4558  PubMed: 32560839 DOI: 10.1016/j.hal.2019.101687 Nishimura, Y. 2016 Diversity and evolution of protist mitochondria : introns, gene content and genome architecture. PhD thesis, University of Tsukuba, Japan, 75 pp. Strain(s): 1333,  1335  Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2012 Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina. PLoS One, 7, e37307 (article ID). Strain(s): 1333,  1335  PubMed: 22606358 DOI: 10.1371/journal.pone.0037307 Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014 An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID). Keywords: group II intron; mitochondrial genome; intron encoded protein; lateral intron transfer; Chrysochromulina sp. Strain(s): 1333  PubMed: 25054084 DOI: 10.4161/mge.29384 Nishimura. Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K-I., Hashimoto, T., Inagaki, Y., Ohkuma, M. 2020 Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista. Front. Ecol. Evol., 8, 140 (article ID). Keywords: kathablepharids; cytochrome c maturation; goniomonads; cryptophytes; holocytochrome c synthase Strain(s): 1335  DOI: 10.3389/fevo.2020.00140 Nishitani, G., Yamamoto, K., Nakajima, M., Shibata, Y., Sato-Okoshi, W., Yamaguchi, M. 2021 A novel parasite strain of Amoebophrya sp. infecting the toxic dinoflagellate Alexandrium catenella (Group I) and its effect on the host bloom in Osaka Bay, Japan. Harmful Algae, 110, 102123 (article ID). Keywords: Alexandrium catenella (Group I); Amoebophrya; Dinoflagellate; Parasite; 18S rDNA; 28S rDNA Strain(s): 237,  3597  PubMed: 34887003 DOI: 10.1016/j.hal.2021.102123 Nitta, N. et al. 2020 Raman image-activated cell sorting. Nat. Commun., 11, 3452 (article ID). Strain(s): 48,  2293,  2463,  3640  PubMed: 32651381 DOI: 10.1038/s41467-020-17285-3 Niu, C., Du, G., Li, R., Wang, C. 2020 Interactive effects of increased temperature, elevated pCO2 and different nitrogen sources on the coccolithophore Gephyrocapsaoceanica. PLoS One, 15, e0235755 (article ID). Strain(s): 1318  PubMed: 32649709 DOI: 10.1371/journal.pone.0235755 Niyommaneerat, W., Nakajima, F., Tobino, T., Yamamoto, K. 2017 Development of a chronic sediment toxicity test using the benthic ostracod Heterocypris incongruens and their application to toxicity assessments of urban road dust. Ecotox. Environ. Safe., 143, 266-274. Keywords: Chronic sediment toxicity test; Heterocypris incongruens; Test repeatability; Reproduction; Urban road dust Strain(s): 94  PubMed: 28551584 DOI: 10.1016/j.ecoenv.2017.05.011 Nobusawa, T., Hori, K., Mori, H., Kurokawa, K., Ohta, H. 2017 Differently localized lysophosphatidic acid acyltransferasescrucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis. Plant J., 90, 547–559. Keywords: Nannochloropsis; triacylglycerol (TAG); biofuels; lysophosphatidic acid acyltransferase (LPAT); lipid droplets Strain(s): 2145  PubMed: 28218992 DOI: 10.1111/tpj.13512 Nobusawa, T., Yamakawa-Ayukawa, K., Saito, F., Nomura, S., Takami, A., Ohta, H. 2019 A homolog of Arabidopsis SDP1 lipase in Nannochloropsis is involved in degradation of de novo-synthesized triacylglycerols in the endoplasmic reticulum. Biochim. Biophys. Acta Mol. Cell Biol. Lipids, 1864, 1185-1193. Keywords: Nannochloropsis; Lipase; Triacylglycerol; SDP1 Strain(s): 2145  PubMed: 31152796 DOI: 10.1016/j.bbalip.2019.05.013 Noël, M.-H., Kawachi, M., Inouye, I. 2004 Induced dimorphic life cycle of a coccolithophorid, Calyptrosphaera sphaeroidea (Prymnesiophyceae, Haptophyta). J. Phycol., 40, 112-129. Strain(s): 997,  1212,  1213  DOI: 10.1046/j.1529-8817.2004.03053.x Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M. 2016 Growth promotion of Spirulina by steelmaking slag: application of solubility diagram to understand its mechanism. AMB Express, 6, 96 (article ID). Keywords: Steelmaking slag; Growth promotion; Spirulina; Solubility diagram; Oxidative stress Strain(s): 39  PubMed: 27730571 DOI: 10.1186/s13568-016-0270-4 Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M. 2017 Growth promotion effect of alginate oligosaccharides on Spirulina analyzed by repeated batch culture. J. Jpn. Inst. Energy, 96, 352-356. Keywords: Alginate oligosaccharides; Anti-oxidation; Arthrospira (Spirulina) platensis; Growth promotion; Phycocyanin; Repeated batch culture Strain(s): 39  DOI: 10.3775/jie.96.352 Noguchi, M., Aizawa, R., Nakazawa, D., Hakumura, Y., Furuhashi, Y., Yang, S., Ninomiya, K.,Takahashi, K., Honda, R. 2021 Application of real treated wastewater to starch production by microalgae: Potential effect of nutrients and microbial contamination. Biochem. Eng. J., 169, 107973 (article ID). Keywords: Biorefinery; Chlorella vulgaris; Chlorination; Microbial contamination; Municipal wastewater; Starch (carbohydrate) production Strain(s): 2151,  2159,  2170  DOI: 10.1016/j.bej.2021.107973 Noguchi, M., Hashimoto, C., Honda, R., Teraoka, Y., Yang, S., Ninomiya, K., Takahashi, K. 2017 Utilization of anaerobic digestion supernatant as a nutrient source in microalgal biomass production with a membrane photobioreactor. J. Water Environ. Technol., 15, 199-206. Keywords: anaerobic digestion supernatant; Chlorella vulgaris; membrane photobioreactor (MPBR) Strain(s): 2170  DOI: 10.2965/jwet.17-006 Noike, T. & Souma, Y. 1993 Survey on the influence factors of eutrophication of lakes and the necessity of advanced waste treatment [Koshô no fu-eiyôka no kanôsei to kôdo shori no hitsuyôsei ni kansuru chôsa]. J. Jpn. Soc. Sewage Works [Gesuidô-Kyôkai Shi], 30, 38-44 (in Japanese). Strain(s): 35  Nojiri, T., Fujii, T., Sekimoto, H. 1995 Purification and characterization of a novel sex pheromone that induces the release of another sex pheromone during sexual reproduction of the heterothallic Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 36, 79-84. Keywords: Closterium; conjugation (Closterium); protoplast-release-inducing protein; pheromone Strain(s): 67,  68  DOI: 10.1093/oxfordjournals.pcp.a078747 Nomaki, H., Rastelli, E., ogawa, N. O., Matsui, Y., Tsuchiya, M., Manea, E., Corinaldesi, C., Hirai, M., Ohkouchi, N., Danovaro, R., Nunoura, T., Amaro, T. 2021 In situ experimental evidences for responses of abyssal benthic biota to shifts in phytodetritus compositions linked to global climate change. Glob. Change Biol., 27, 6139-6155. Keywords: abyssal plain; benthic ecosystems; climate change; ecosystem functioning; isotope tracer; primary producers Strain(s): 377,  986  PubMed: 34523189 DOI: 10.1111/gcb.15882 Nomura, M. & Ishida, K-I. 2016 Fine-structural observations on siliceous scale production and shell assembly in the testate amoeba Paulinella chromatophora. Protist, 167, 303-318. Keywords: Paulinella chromatophora; testate amoebae; siliceous scale production; silica deposition vesicle; shell construction; ultrastructure Strain(s): 4060  PubMed: 27348459 DOI: 10.1016/j.protis.2016.05.002 Nomura, M., Atsuji, K., Hirose, K., Shiba, K., Yanase, R., Nakayama, T., Ishida, K-I., Inaba, K. 2019 Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae. Biol. Open, 8, bio036590 (article ID). Keywords: Haptophyte; Chrysochromulina; Haptonema; Microtubule; Paclitaxel; Curvature Strain(s): 4122  PubMed: 30700402 DOI: 10.1242/bio.036590 Nomura, M., Kamikawa, R., Ishida, K-I. 2020 Fine structureo observation of feeding behavior, Nephroselmis spp.-derived chloroplast enlargement, and mitotic processes in the Katablepharid Hatena arenicola. Protist, 171, 125714 (article ID). Keywords: Hatena arenicola; Nephroselmis; kleptochloroplastidy; feeding behavior; mitosis; ultrastructure Strain(s): 1417  PubMed: 32088560 DOI: 10.1016/j.protis.2020.125714 Nomura, M., Nakayama, T., Ishida, K-I. 2014 Detailed process of shell construction in the photosynthetic testate amoeba Paulinella chromatophora (Euglyphid, Rhizaria). J. Eucaryot. Microbiol., 61, 317-321. Keywords: cell covering; LysoTracker; protist; siliceous; scale; time-lapse video microscopy Strain(s): 4060  PubMed: 24444111 DOI: 10.1111/jeu.12102 Nomura, T., Inoue, K., Uehara-Yamaguchi, Y., Yamada, K., Iwata, O., Suzuki, K., Mochida, K. 2019 Highly efficient transgene‐free targeted mutagenesis and single‐stranded oligodeoxynucleotide‐mediated precise knock‐in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins. Plant Biotechnol. J., 17, 2032-2034. Keywords: Euglena gracilis; Microalgae; genome editing; ribonucleoproteins; CRISPR/Cas9; transgene free; knock-in; single-stranded oligodeoxynucleotides Strain(s): 48  PubMed: 31131534 DOI: 10.1111/pbi.13174 Not, F., Simon, N., Biegala, I. C., Vaulot, D. 2002 Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition. Aquat. Microb. Ecol., 28, 157-166. Keywords: Fluorescent in situ hybridization; Tyramide signal amplification; Picoplankton; Eukaryotes; Coastal waters; Diversity Strain(s): 2673,  2682  DOI: 10.3354/ame028157 Nowack, E. C. M., Podola, B., Melkonian, M. 2005 The 96-well twin-layer system: a novel approach in the cultivation of microalgae. Protist, 156, 239-251. Keywords: cultivation; culture collections; cell immobilisation; microalgae; microtiter plates; filter plates Strain(s): 255,  483,  485  PubMed: 16171190 DOI: 10.1016/j.protis.2005.04.003 Nowruzi, B. & MShalygin, S. 2021 Multiple phylogenies reveal a true taxonomic position of Dulcicalothrix alborzica sp. nov. (Nostocales, Cyanobacteria). Fottea, 21, 235-246. Keywords: new species; polyphasic approach; rbcL; rpoC1; 16S–23S ITS Strain(s): 4105  DOI: 10.5507/fot.2021.008 Nozaki, H. 1981 The life history of Japanese Pandorina unicocca (Chlorophyta, Volvocales). J. Jpn. Bot., 56, 65-72, pls. 1-2. Strain(s): 666,  667  Nozaki, H. 1982 Morphology and reproduction of Japanese Volvulina steinii (Chlorophyta, Volvocales). J. Jpn. Bot., 57, 105-113, pls. 3-4. Strain(s): 545,  546,  896,  897,  898  Nozaki, H. 1983 Morphology and taxonomy of two species of Astrephomene (Chlorophyta, Volvocales) in Japan. J. Jpn. Bot., 58, 345-352, pls. 11-13. Strain(s): 418,  419,  564,  565  Nozaki, H. 1983 Sexual reproduction in Eudorina elegans (Chlorophyta, Volvocales). Bot. Mag. Tokyo, 96, 103-110. Keywords: anisogamous conjugation; Chlorophyta; Eudorina elegans; gone colony formation; sexual reproduction; Volvocales Strain(s): 456,  457  DOI: 10.1007/BF02491095 Nozaki, H. 1984 Volvox aureus Ehrenberg var. aureus. In Photomicrog. Fresh-w. Alg. [Tansui Sôrui Syashinsyû] Vol. 1, Eds. by Yamagishi, T. & Akiyama, M., Uchida Rokakuho, Tokyo, pp. 97 (in Japanese & English). Strain(s): 541,  542  Nozaki, H. 1984 Newly found facets in the asexual and sexual reproduction of Gonium pectorale (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 32, 130-133. Keywords: asexual reproduction; Chlorophyta; flagellar emission; Gonium pectorale; isogamous conjugation; mating papilla; sexual reproduction; Volvocales Strain(s): 468,  469  Nozaki, H. 1986 Notes on microalgae in Japan (10). Eudorina illinoisensis (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 34, 144 (in Japanese with English title). Strain(s): 459,  460  Nozaki, H. 1986 Notes on microalgae in Japan (9). Basichlamys sacculifera (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 34, 143 (in Japanese with English title). Strain(s): 566  Nozaki, H. 1986 Sexual reproduction in Gonium sociale (Chlorophyta, Volvocales). Phycologia, 25, 29-35. Strain(s): 571  DOI: 10.2216/i0031-8884-25-1-29.1 Nozaki, H. 1986 Zygote germination in Eudorina elegans var. synoica (Chlorophyta, Volvocales). J. Jpn. Bot., 61, 316-320, pl. 8. Strain(s): 458  Nozaki, H. 1988 Colonial Volvocales (Chlorophyta) from Kathmandu, Nepal. In Cryptogams of the Himalayas. Vol. 1. The Kathmandu Valley, Eds. by Watanabe, M. & Malla, S. B., Department of Botany, National Science Museum, Tsukuba, pp. 39-46. Strain(s): 568,  574,  575  Nozaki, H. 1988 Morphology, sexual reproduction and taxonomy of Volvox carteri f. kawasakiensis f. nov. (Chlorophyta) from Japan. Phycologia, 27, 209-220. Strain(s): 580,  581,  732,  733  DOI: 10.2216/i0031-8884-27-2-209.1 Nozaki, H. 1989 Morphological variation and reproduction in Gonium viridistellatum (Volvocales, Chlorophyta). Phycologia, 28, 77-88. Strain(s): 288,  289,  290,  654,  655  DOI: 10.2216/i0031-8884-28-1-77.1 Nozaki, H. 1990 Colonial Volvocales (Chlorophyta) from Central and East Nepal. In Cryptogams of the Himalayas. Vol. 2. Central and Eastern Nepal, Eds. by Watanabe, M. & Malla, S. B., Department of Botany, National Science Museum, Tsukuba, pp. 41-47. Strain(s): 584,  585  Nozaki, H. 1990 Ultrastructure of the extra-cellular matrix of Gonium (Volvocales, Chlorophyta). Phycologia, 29, 1-8. Strain(s): 468,  651,  885  DOI: 10.2216/i0031-8884-29-1-1.1 Nozaki, H. 1993 Asexual and sexual reproduction in Gonium quadratum (Chlorophyta) with a discussion of phylogenetic relationships within the Goniaceae. J. Phycol., 29, 369-376. Keywords: asexual reproduction; Chlorophyta; Goniaceae; Gonium quadratum; mating papilla; phylogeny; sexual reproduction; zygote germination Strain(s): 651,  652,  653  DOI: 10.1111/j.0022-3646.1993.00369.x Nozaki, H. 1993 Morphology, reproduction and taxonomy of Characiochloris sasae sp. nov. (Chlorophyta) from Japan. Phycologia, 32, 129-135. Strain(s): 567,  637,  638  DOI: 10.2216/i0031-8884-32-2-129.1 Nozaki, H. 1994 Aplanogamous sexual reproduction in Carteria eugametos (Volvocales, Chlorophyta). Eur. J. Phycol., 29, 135-139. Keywords: aplanogamy; Carteria eugametos; Chlorophyta; morphology; sexual reproduction; Volvocales Strain(s): 631,  632,  633  DOI: 10.1080/09670269400650581 Nozaki, H. 1994 Unequal flagellar formation in Volvox (Volvocaceae, Chlorophyta). Phycologia, 33, 58-61. Strain(s): 541,  732  DOI: 10.2216/i0031-8884-33-1-58.1 Nozaki, H. 2003 Origin and evolution of the genera Pleodorina and Volvox (Volvocales). Biologia, Bratislava, 58, 425-431. Keywords: colonial Volvocales; evolution; molecular phylogeny; Pleodorina; sexual reproduction; Volvox Strain(s): 544  Nozaki, H. 2008 Zygote germination in Pleodorina starrii (Volvocaceae, Chlorophyta). Biologia, 63, 778–780. Keywords: Chlorophyta; Volvocales; Volvocaceae; Pleodorina starrii; morphology; zygote germination Strain(s): 1852,  1853,  1854  DOI: 10.2478/s11756-008-0098-8 Nozaki, H. & Coleman, A. W. 2011 A new species of Volvox sect. Merrillosphaera (Volvocaceae, Chlorophyceae) from Texas. J. Phycol., 47, 673-679. Keywords: molecular phylogeny; morphology; taxonomy; Volvox ovalis sp. nov.; Volvox sect. Merrillosphaera Strain(s): 2569  PubMed: 27021996 DOI: 10.1111/j.1529-8817.2011.00975.x Nozaki, H. & Ito, M. 1994 Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data. J. Phycol., 30, 353-365. Keywords: Chlorophyta; cladistic analysis; Goniaceae; morphological data; phylogeny; sexual reproduction; Tetrabaena; Tetrabaenaceae fam. nov.; Tetrabaena socialis comb. nov.; Volvocaceae Strain(s): 456,  460,  541,  565,  571,  654  DOI: 10.1111/j.0022-3646.1994.00353.x Nozaki, H. & Kasaki, H. 1979 The sexual process of Japanese Pandorina morum Bory (Chlorophyta). J. Jpn. Bot., 54, 363-370, pl. 9. Strain(s): 890  Nozaki, H. & Krienitz, L. 2001 Morphology and phylogeny of Eudorina minodii (Chodat) Nozaki et Krienitz, comb. nov. (Volvocales, Chlorophyta) from Germany. Eur. J. Phycol., 36, 23-28. Keywords: Eudorina minodii comb. nov.; molecular phylogeny; morphology; Pandorina minodii; taxonomy; Volvocales Strain(s): 351,  546,  576,  717,  856  DOI: 10.1080/09670260110001735158 Nozaki, H. & Kuroiwa, T. 1990 Volvulina compacta sp. nov. (Volvocaceae, Chlorophyta) from Nepal. Phycologia, 29, 410-417. Strain(s): 582,  583  DOI: 10.2216/i0031-8884-29-4-410.1 Nozaki, H. & Kuroiwa, T. 1991 Pandorina colemaniae sp. nov. (Volvocaceae, Chlorophyta) from Japan. Phycologia, 30, 449-457. Strain(s): 572,  573  DOI: 10.2216/i0031-8884-30-5-449.1 Nozaki, H. & Kuroiwa, T. 1991 Morphology and sexual reproduction of Gonium multicoccum (Volvocales, Chlorophyta) from Nepal. Phycologia, 30, 381-393. Strain(s): 737,  885  DOI: 10.2216/i0031-8884-30-5-381.1 Nozaki, H. & Kuroiwa, T. 1992 Ultrastructure of the extracellular matrix and taxonomy of Eudorina, Pleodorina and Yamagishiella gen. nov. (Volvocaceae, Chlorophyta). Phycologia, 31, 529-541. Strain(s): 459,  666  DOI: 10.2216/i0031-8884-31-6-529.1 Nozaki, H. & Ohtani, S. 1992 Gonium sociale (Volvocales, Chlorophyta) from Antarctica. Jpn. J. Phycol. (Sôrui), 40, 267-271. Keywords: Antarctica; Chlorophyta; culture; Gonium sociale; morphology; Volvocales Strain(s): 571,  691  Nozaki, H., Aizawa, K., Watanabe, M. M. 1994 A taxomonic study of four species of Cartera (Volvocales, Chlorophyta) with cruciate anterior papillae, based on cultured material. Phycologia, 33, 239-247. Strain(s): 421,  422,  423,  424,  425,  630,  632,  633,  634,  635,  636  Nozaki, H., Aizawa, K., Watanabe, M. M. 1996 Re-examination of two NIES strains labeled Chlorogonium metamorphum (Volvocales, Chlorophyta) from Japan. Nova Hedwigia Beiheft, 112, 483-490. Keywords: Chlorogonium; Chlorophyta; morphology; neotype strain; species identification; Volvocales Strain(s): 123,  446  Nozaki, H., Hara, Y., Kasaki, H. 1987 Light and electron microscopy of pyrenoids and species delimitation in Volvulina (Chlorophyta, Volvocaceae). J. Phycol., 23, 359-364. Keywords: Chlorophyta; culture age; pyrenoid; pyrenoid development; taxonomy; ultrastructure; Volvocaceae; Volvulina pringsheimii; Volvulina steinii Strain(s): 545,  896,  897,  898  DOI: 10.1111/j.1529-8817.1987.tb04145.x Nozaki, H., Iseki, M., Hasegawa, M., Misawa, K., Nakada, T., Sasaki, N., Watanabe, M. 2007 Phylogeny of primary photosynthetic eukaryotes as deduced from slowly evolving nuclear genes. Mol. Biol. Evol., 24, 1592-1595. Keywords: eukaryote evolution; long branch attraction; phylogeny; plastid endosymbiosis; primary photosynthetic eukaryotes; taxon sampling Strain(s): 547  PubMed: 17488739 DOI: 10.1093/molbev/msm091 Nozaki, H., Ito, M., Sano, R., Uchida, H., Watanabe, M. M., Kuroiwa, T. 1995 Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data. J. Phycol., 31, 970-979. Keywords: Chlorophyta; Goniaceae; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; Tetrabaenaceae; Volvocaceae Strain(s): 418,  421,  456,  460,  541,  564,  566,  569,  571,  572,  574,  577,  653,  725,  731,  732,  734,  735,  737,  895  DOI: 10.1111/j.0022-3646.1995.00970.x Nozaki, H., Ito, M., Sano, R., Uchida, H., Watanabe, M. M., Takahashi, H., Kuroiwa, T. 1997 Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 272-278. Keywords: Chlorophyta; Goniaceae; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; Platydorina; Volvocaceae; Yamagishiella Strain(s): 582,  654,  666,  722,  724,  726,  728,  729,  730,  736,  884  DOI: 10.1111/j.0022-3646.1997.00272.x Nozaki, H., Ito, M., Uchida, H., Watanabe, M. M., Kuroiwa, T. 1997 Phylogenetic analysis of Eudorina species (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 859-863. Keywords: Chlorophyta; Eudorina; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; species delimitation; taxonomic species; Volvocaceae Strain(s): 458,  568,  717,  718,  719,  720,  721,  723  DOI: 10.1111/j.0022-3646.1997.00859.x Nozaki, H., Ito, M., Watanabe, M. M., Kuroiwa, T. 1996 Ultrastructure of the vegetative colonies and systematic position of Basichlamys (Volvocales, Chlorophyta). Eur. J. Phycol., 31, 67- 72. Keywords: Basichlamys sacculifera; Chlorophyta; cladistic analysis; phylogeny; Tetrabaenaceae; ultrastructure; Volvocales Strain(s): 566  DOI: 10.1080/09670269600651211a Nozaki, H., Ito, M., Watanabe, M. M., Takano, H., Kuroiwa, T. 1997 Phylogenetic analysis of morphological species of Carteria (Volvocales, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 864-867. Keywords: Carteria; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; microalgae; molecular phylogeny; monophyly; natural systematics; species concepts; species taxonomy; Volvocales Strain(s): 421,  422,  423,  424,  425,  428,  432,  630,  631,  632,  633,  634,  635,  636  DOI: 10.1111/j.0022-3646.1997.00864.x Nozaki, H., Kanesaki, Y., Matsuzaki, M., Hirooka, S. 2018 The 100%-complete nuclear and organellar genome sequences of the ultrasmall red algal species Cyanidioschyzon merolae 10D. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 61-72. Strain(s): 3377  DOI: 10.1007/978-981-10-6101-1_5 Nozaki, H., Katagiri, M., Nakagawa, M., Aizawa, K., Watanabe, M. M. 1995 Taxonomic re-examination of the two strains labeled Chlorella in the Microbial Culture Collection at the National Institute for Environmental Studies (NIES-Collection). Microbiol. Cult. Coll., 11, 11-18. Keywords: Chlorella; Graesiella emersonii comb. nov.; green algae; morphology; taxonomy Strain(s): 226,  227,  686,  687,  688,  689,  690  Nozaki, H., Kuroiwa, H., Kuroiwa, T. 1994 Light and electron microscopic characterization of two types of pyrenoids in Gonium (Goniaceae, Chlorophyta). J. Phycol., 30, 279-290. Keywords: Chlorophyta; electron microscopy; Goniaceae; Gonium pectorale; Gonium quadratum; immunogold electron microscopy; pyrenoid; ribulose-1,5-bisphosphate carboxylase / oxygenase (RuBisCO) taxonomy; thylakoid lamellae Strain(s): 468,  653  DOI: 10.1111/j.0022-3646.1994.00279.x Nozaki, H., Kuroiwa, H., Mita, T., Kuroiwa, T. 1989 Pleodorina japonica sp. nov. (Volvocales, Chlorophyta) with bacteria-like endosymbionts. Phycologia, 28, 252-267. Strain(s): 577  DOI: 10.2216/i0031-8884-28-2-252.1 Nozaki, H., Mahakham, W., Heman W., Matsuzaki, R., Kawachi, M. 2022 Morphology, mating system and taxonomy of Volvox africanus (Volvocaceae, Chlorophyceae) from Thailand. Bot. Stud., 63, 1 (article ID). Strain(s): 3780,  3781,  3782,  3783,  4467,  4468  PubMed: 35061120 DOI: 10.1186/s40529-022-00332-1 Nozaki, H., Mahakham, W., Heman, W., Matsuzaki, R., Kawachi, M. 2020 A new preferentially outcrossing monoicous species of Volvox sect. Volvox (Chlorophyta) from Thailand. PLoS One, 15, e0235622 (article ID). Strain(s): 2736,  2740,  3382,  3383,  3874,  4021,  4336,  4432,  4433,  4434,  4435,  4436  PubMed: 32614898 DOI: 10.1371/journal.pone.0235622 Nozaki, H., Maruyama, S., Matsuzaki, M., Nakada, T., Kato, S., Misawa, K. 2009 Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes. Mol. Phylogenet. Evol., 53, 872-880. Keywords: Archaeplastida; Chromalveolata; eukaryote evolution; Haptophyta; Glaucophyta; green plants; long branch attraction; nuclear genes; phylogeny; primary photosynthetic eukaryotes; short branch; "Super" Plant Kingdom Strain(s): 547  PubMed: 19698794 DOI: 10.1016/j.ympev.2009.08.015 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Higashiyama, T., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2004 Cyanobarterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J. Mol. Evol., 59, 103-113. Keywords: Chromista; cyanobacterial nuclear genes; phylogeny; plastids; primary endosymbiosis; secondary endosymbiosis Strain(s): 1332,  3377  PubMed: 15383913 DOI: 10.1007/s00239-003-2611-1 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2005 Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta). J. Phycol., 41, 652-657. Keywords: CAD complex; evolution; phylogeny; red algae; pyrimidine biosynthetic cluster Strain(s): 1332,  3377  DOI: 10.1111/j.1529-8817.2005.00079.x Nozaki, H., Matsuzaki, M., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2003 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol., 56, 485-497. Keywords: eukaryotes; evolution; nuclear genes; outgroup; phylogeny; plantae; plastid; protein-coding genes; red algae Strain(s): 1332,  3377  PubMed: 12664168 DOI: 10.1007/s00239-002-2419-9 Nozaki, H., Matsuzaki, R., Yamamoto, K., Kawachi, M., Takahashi, F. 2015 Delineating a new heterothallic species of Volvox (Volvocaceae, Chlorophyceae) using new strains of “Volvox africanus”. PLoS One, 10, e0142632 (article ID). Strain(s): 3780,  3781,  3782,  3783,  3784,  3785,  3786  PubMed: 26562165 DOI: 10.1371/journal.pone.0142632 Nozaki, H., Misawa, K., Kajita, T., Kato, M., Nohara, S., Watanabe, M. M. 2000 Origin and evolution of the colonial Volvocales (Chlorophyceae) as inferred from multiple, chloroplast gene sequences. Mol. Phylogenet. Evol., 17, 256-268. Strain(s): 418,  456,  460,  474,  541,  545,  564,  566,  569,  571,  572,  574,  577,  582,  653,  654,  666,  720,  721,  722,  724,  725,  727,  728,  730,  731,  732,  734,  735,  736,  737,  851,  854,  872,  882,  884,  886,  887,  888,  889,  890,  893,  895,  896,  898  PubMed: 11083939 DOI: 10.1006/mpev.2000.0831 Nozaki, H., Misumi, O., Kuroiwa, T. 2003 Phylogeny of the quadriflagellate Volvocales (Chlorophyceae) based on chloroplast multigene sequences. Mol. Phylogenet. Evol., 29, 58-66. Strain(s): 257,  656  PubMed: 12967607 DOI: 10.1016/S1055-7903(03)00089-7 Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamaguchi, H., Kawachi, M. 2022 Cryopreservation of vegetative cells and zygotes of the multicellular volvocine green alga Gonium pectorale. BMC Microbiol., 22, 103 (article ID). Strain(s): 288,  290,  468,  469,  569,  570,  645,  646,  652,  653,  654,  655,  737,  851,  852,  885,  2261,  2263,  4121,  4499,  4500,  4501,  4502  PubMed: 35421922 DOI: 10.1186/s12866-022-02519-9 Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamashita, S., Yamaguchi, H., Kawachi, K. 2023 Cryopreservation of two species of the multicellular volvocine green algal genus Astrephomene. BMC Microbiol., 23, 16 (article ID). Keywords: Asexual cycle; Astrephomene; Cryopreservation; Cryoprotectant; Culture collection; Volvocine green algae Strain(s): 418,  419,  564,  565,  628,  853,  854,  855,  4017  PubMed: 36650459 DOI: 10.1186/s12866-023-02767-3 Nozaki, H., Mori, T., Misumi, O., Matsunaga, S., Kuroiwa, T. 2006 Males evolved from the dominant isogametic mating type. Curr. Biol., 16, R1018-R1020. Strain(s): 1611,  1614,  2212,  2213,  2214  PubMed: 17174904 DOI: 10.1016/j.cub.2006.11.019 Nozaki, H., Nakada, T., Watanabe, S. 2010 Evolutionary origin of Gloeomonas (Volvocales, Chlorophyceae), based on ultrastructure of chloroplasts and molecular phylogeny. J. Phycol., 46, 195-201. Keywords: Chloromonadinia; Chloromonas; evolution; Gloeomonas; molecular phylogeny; pyrenoid; ultrastructure; Volvocales Strain(s): 447,  464  DOI: 10.1111/j.1529-8817.2009.00773.x Nozaki, H., Ohta, N., Morita, E., Watanabe, M. M. 1998 Toward a natural system of species in Chlorogonium (Volvocales, Chlorophyta): a combined analysis of morphological and rbcL gene sequence data. J. Phycol., 34, 1024-1037. Keywords: Chlorogonium; Chlorogonium kasakii sp. nov.; Chlorophyta; molecular phylogeny; monophyletic species; morphology; natural systematics; rbcL gene; species taxonomy; Volvocales Strain(s): 123,  439,  446,  692,  742,  743,  744,  745,  746,  747,  748,  749,  750,  751,  752,  753,  754,  755,  756,  757,  758,  759,  760,  761  DOI: 10.1046/j.1529-8817.1998.341024.x Nozaki, H., Ohta, N., Takano, H., Watanabe, M. M. 1999 Reexamination of phylogenetic relationships within the colonial Volvocales (Chlorophyta): an analysis of atpB and rbcL gene sequences. J. Phycol., 35, 104-112. Keywords: atpB gene; Chlorophyta; Gonium; molecular phylogeny; rbcL gene; Volvocaceae; volvocine series; Volvox Strain(s): 418,  456,  460,  541,  564,  566,  568,  569,  571,  572,  574,  577,  582,  653,  654,  666,  720,  721,  722,  724,  725,  727,  728,  730,  731,  732,  734,  735,  736,  737,  851,  852,  858,  861,  882,  884,  895  DOI: 10.1046/j.1529-8817.1999.3510104.x Nozaki, H., Onishi, K., Morita, E. 2002 Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). J. Mol. Evol., 55, 414-430. Keywords: ATP synthase β-subunit (atpB) gene; Chloromonas; gene evolution; large subunit of Rubisco (rbcL) gene; morphological evolution; P700 chlorophyll a-apoprotein A2 (psaB) gene; pyrenoid; Volvocales Strain(s): 96,  123,  144,  213,  418,  421,  425,  428,  432,  439,  446,  447,  456,  474,  522,  564,  566,  567,  569,  571,  574,  582,  653,  732,  851,  858,  861,  875,  882,  883,  968  PubMed: 12355262 DOI: 10.1007/s00239-002-2338-9 Nozaki, H., Ott, F. D., Coleman, A. W. 2006 Morphology, molecular phylogeny and taxonomy of two new species of Pleodorina (Volvocaceae, Chlorophyceae). J. Phycol., 42, 1072-1080. Keywords: colonial Volvocales; molecular phylogeny; morphology; Pleodorina starrii sp. nov.; Pleodorina thompsonii sp. nov.; taxonomy Strain(s): 456,  460,  541,  544,  577,  666,  720,  721,  722,  724,  725,  728,  730,  731,  732,  734,  735,  736,  863,  865,  866,  867,  868,  869,  872,  891,  892,  1362,  1363,  4126,  4127  DOI: 10.1111/j.1529-8817.2006.00255.x Nozaki, H., Song, L., Liu, Y., Hiroki, M., Watanabe, M. M. 1998 Taxonomic re-examination of a Chinese strain labeled 'Eudorina sp.' (Volvocaceae, Chlorophyta) based on morphological and DNA sequence data. Phycol. Res., 46, Suppl., 63-70. Keywords: 5-bisphosphate carboxylase/oxygenase (rbcL) gene; Chlorophyta; Eudorina; large subunit of ribulose-1; molecular phylogeny; morphology; taxonomy; Yamagishiella Strain(s): 578  DOI: 10.1111/j.1440-1835.1998.tb00273.x Nozaki, H., Takahara, M., Nakazawa, A., Kita, Y., Yamada, T., Takano, H., Kawano, S., Kato, M. 2002 Evolution of rbcL group IA introns and intron open reading frames within the colonial Volvocales (Chlorophyceae). Mol. Phylogenet. Evol., 23, 326-338. Strain(s): 289,  418,  582,  654,  857,  875,  883,  891,  892  PubMed: 12099791 DOI: 10.1016/S1055-7903(02)00030-1 Nozaki, H., Takano, H., Misumi, O., Terasawa, K., Matsuzaki, M., Maruyama, S., Nishida, K., Yagisawa, F., Yoshida, Y., Fujiwara, T., Takio, S., Tamura, K., Chung, S. J., Nakamura, S., Kuroiwa, H., Tanaka, K., Sato, N., Kuroiwa, T. 2007 A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. BMC Biol., 5, 28 (article ID). Strain(s): 1332,  3377  PubMed: 17623057 DOI: 10.1186/1741-7007-5-28 Nozaki, H., Takusagawa, M., Matsuzaki, R., Misumi, O., Mahakham, W., Kawachi, M. 2019 Morphology, reproduction and taxonomy of Volvox dissipatrix (Chlorophyceae) from Thailand, with a description of Volvox zeikusii sp. nov. Phycologia, 58, 192-199. Keywords: Heterothallic species; Homothallic species; Molecular phylogeny; Sexuality; Somatic cell; Transmission electron microscopy Strain(s): 731,  4128,  4270  DOI: 10.1080/00318884.2018.1540238 Nozaki, H., Ueki, N., Isaka, N., Saigo, T., Yamamoto, K., Matsuzaki, R., Takahashi, F., Wakabayashi, K-I., Kawachi, M. 2016 A new morphological type of Volvox from japanese large lakes and recent divergence of this type and V. ferrisii in two different freshwater habitats. PLoS One, 11, e0167148 (article ID). Strain(s): 2736,  2737,  3987,  3988,  4021,  4022,  4023,  4024,  4025,  4026,  4027,  4028  PubMed: 27880842 DOI: 10.1371/journal.pone.0167148 Nozaki, H., Ueki, N., Misumi, O., Yamamoto, K., Yamashita, S., Herron, M. D., Rosenzweig, F. 2015 Morphology and reproduction of Volvox capensis (Volvocales, Chlorophyceae) from Montana, USA. Phycologia, 54, 316-320. Keywords: Monoecious species; Morphology; Pplyspermy; Reproduction; Volvox capensis; Volvox sect. Volvox Strain(s): 3874  DOI: 10.2216/15-14.1 Nozaki, H., Yamada, K. T., Takahashi, F., Matsuzaki, R., Nakada, T. 2014 New "missing link" genus of the colonial volvocine green algae gives insights into the evolution of oogamy. BMC Evol. Biol., 14, 37 (article ID). Strain(s): 3382,  3383,  3384,  3385,  3386,  3387,  3388  PubMed: 24589311 DOI: 10.1186/1471-2148-14-37 Nozaki. H., Mahakham, W., Athibai, S., Yamamoto, K., Takusagawa, M., Misumi, O., Herron, M. D., Rosenzweig, F., Kawachi, M. 2017 Rediscovery of the species of ‘ancestral Volvox’: morphology and phylogenetic position of Pleodorina sphaerica (Volvocales, Chlorophyceae) from Thailand. Phycologia, 56, 469-475. Keywords: Molecular phylogeny; Morphology; Pleodorina; Pleodorina sphaerica; Sexuality; Somatic cell; Volvox Strain(s): 4066,  4067,  4068,  4069  PubMed: 29375162 DOI: 10.2216/17-3.1 Nozue, S., Katayama, M., Terazima, M., Kumazaki, S. 2017 Comparative study of thylakoid membranes in terminal heterocysts and vegetative cells from two cyanobacteria, Rivularia M-261 and Anabaena variabilis, by fluorescence and absorption spectral microscopy. Biochim. Biophys. Acta-Bioenerg., 1858, 742-749. Keywords: Cyanobacteria; Heterocyst; Thylakoid membrane; Anabaena variabilis; Rivularia; Spectroscopic microscopy Strain(s): 2095  PubMed: 28576442 DOI: 10.1016/j.bbabio.2017.05.007 Nozue, S., Mukuno, A., Tsuda, Y., Shiina, T., Terazima, M., Kumazaki, S. 2016 Characterization of thylakoid membrane in a heterocystous cyanobacterium and green alga with dual-detector fluorescence lifetime imaging microscopy with a systematic change of incident laser power. Biochim. Biophys. Acta-Bioenerg., 1857, 46–59. Keywords: Photosystem II; Photosystem I; Chlorophyll fluorescence; Fluorescence lifetime imaging microscopy; Heterocystous cyanobacteria; Green algae Strain(s): 2095  PubMed: 26474523 DOI: 10.1016/j.bbabio.2015.10.003 Nybom, S. M. K., Salminen, S. J., Meriluoto, J. A. O. 2008 Specific strains of probiotic bacteria are efficient in removal of several different cyanobacterial toxins from solution. Toxicon, 52, 214-220. Keywords: Cyanotoxin; Microcystin; Cylindrospermopsin; Probiotic bacteria; Bifidobacterium; Lactobacillus; Removal Strain(s): 107  PubMed: 18639912 DOI: 10.1016/j.toxicon.2008.04.169 Obata, T. & Shiraiwa, Y. 2005 A novel eukaryotic selenoprotein in the haptophyte alga Emiliania huxleyi. J. Biol. Chem., 280, 18462-18468. Strain(s): 837  DOI: 10.1074/jbc.M501517200 Obata, T., Araie, H., Shiraiwa, Y. 2004 Bioconcentration mechanism of selenium by a coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 45, 1434-1441. Keywords: coccolithophorid; Emiliania huxleyi; selenite uptake; selenium accumulation Strain(s): 837  PubMed: 15564527 DOI: 10.1093/pcp/pch164 Obata, T., Sera, K., Futatsugawa, S., Shiraiwa, Y. 2004 Multi-element analysis of marine microalgae using particle-induced X-ray emission. Mar. Biotechnol., 6, 66-70. Keywords: coccolithophorid; element concentration; elemental composition; Emiliania huxleyi; multi-element analysis; particle-induced X-ray emmision Strain(s): 837  Oborník, M., Vancová, M., Lai, D. H., Janouškovec, J., Keeling, P. J., Lukeš, J. 2011 Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist, 162, 115-130. Strain(s): 4391  PubMed: 20643580 DOI: 10.1016/j.protis.2010.02.004 Ochiai, T., Fukuda, T., Nakata, K., Murakami, T., Tryk, D. A., Koide, Y., Fujishima, A. 2010 Photocalalytic inactivation and removal of algae with TiO2-coated materials. J. Appl. Electrochem., 40, 1737–1742. Keywords: TiO2 photocatalyst; photoelectrochemical deposition; photocatalytic inactivation; algae Strain(s): 1668  DOI: 10.1007/s10800-010-0133-7 Oda, T., Nakamura, A., Okamoto, T., Ishimatsu, A., Muramatsu, T. 1998 Lectin-induced enhancement of superoxide anion production by red tide phytoplankton. Mar. Biol., 131, 383-390. Strain(s): 6  DOI: 10.1007/s002270050331 Oda, T., Nakamura, A., Shikayama, M., Kawano,I., Ishimatsu, A., Muramatsu, T. 1997 Generation of reactive oxygen species by Raphidophycean phytoplankton. Biosci. Biotechnol. Biochem., 61, 1658-1662. Keywords: red tide planlton; Raphidophyceae; Chattonella marina; reactive oxygen species; toxicity Strain(s): 6,  15  PubMed: 9362113 DOI: 10.1271/bbb.61.1658 Oda, T., Sato, Y., Kim, D., Muramatsu, T., Matsuyama, Y., Honjo, T. 2001 Hemolytic activity of Heterocapsa circularisquama (Dinophyceae) and its possible involvement in shellfish toxicity. J. Phycol., 37, 509-516. Keywords: Heterocapsa circularisquama; hemolysis; shellfish toxicity; harmful phytoplankton Strain(s): 15  DOI: 10.1046/j.1529-8817.2001.037004509.x Oda, Y., Nakamura, H., Tokishita, S., Mano, H., Chang, K.-H., Sakamoto, M. 2021 Phenotypic changes in Daphnia pulex under oxygen deficiency, resource limitation and predation risk. Ecol. Res., 36, 533-544. Keywords: Daphnia pulex; filter‐screen enlargement; hemoglobin synthesis; neck teeth formation; phenotypic plasticity Strain(s): 35  DOI: 10.1111/1440-1703.12216 Oda, Y., Sakamoto, M., Miyabara, Y. 2022 Colony formation in three species of the family Scenedesmaceae (Desmodesmus subspicatus, Scenedesmus acutus, Tetradesmus dimorphus) exposed to sodium dodecyl sulfate and its interference with grazing of Daphnia galeata. Arch. Environ. Contam. Toxicol., 82, 37-47. Strain(s): 95,  119,  802  PubMed: 34535811 DOI: 10.1007/s00244-021-00890-8 Oesterhelt, C., Gross, W. 2002 Different sugar kinases are involved in the sugar sensing of Galdieria sulphuraria. Plant Physiol., 128, 291-299. Strain(s): 3638  DOI: 10.1104/pp.010553 Oesterhelt, C., Schnarrenberger, C., Gross, W. 1997 The reaction of mechanism of phosphomannomutase in plants. FEBS Lett., 401, 35-37. Keywords: Galdieria sulphuraria; Rhodophyta; Phosphomannomutase; Mannose-1,6-bisphosphate; Reaction mechanism Strain(s): 3638  DOI: 10.1016/S0014-5793(96)01425-1 Ogasawara, N. & Miyachi, S. 1969 Effect of wavelength on 14CO2-fixation in Chlorella cells. In Progress in Photosynthesis Research, Vol. 3., Ed. by Metzner, H., Verlag C. Lichtenstein, München, pp. 1653-1661. Strain(s): 2170  Ogasawara, N. & Miyachi, S. 1970 Effects of disalicylidenepropandiamine and near far-red light on 14CO2-fixation in Chlorella cells. Plant Cell Physiol., 11, 411-416. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a074523 Ogasawara, N. & Miyachi, S. 1970 Regulation of CO2-fixation in Chlorella by light of varied wavelengths and intensities. Plant Cell Physiol., 11, 1-14. Strain(s): 2170  Ogasawara, N. & Miyachi, S. 1971 Effects of dark preincubation and chloramphenicol on blue light-induced CO2 incorporation in Chlorella cells. Plant Cell Physiol., 12, 675-682. Strain(s): 2170  Ogawa, S. & Hirota, K. 2000 Disintegration of chloroplasts during zygote maturation in Closterium ehrenbergii (Zygnematales, Chlorophyta). Int. J. Plant Sci., 161, 609-614. Keywords: chloroplast; Closterium; conjugation; disintegration of chloroplast; Zygnematales; zygote maturation Strain(s): 228,  229  DOI: 10.1086/314287 Ogawa, S., Iokawa, Y., Oba, T., Watanabe, T. 1999 Application of low-vacuum scanning electron microscope (LV SEM) to the classes for plankton observation. Bull. Joetsu Univ. Educ., 19, 99-109 (in Japanese with English summary). Keywords: freeze-drying method; low-vacuum scanning electron microscope (LV SEM); plankton; scanning electron microscope (SEM) Strain(s): 229  Ogawa, S., Shatari, Y. 2004 Spot-like area of F-actin associated with the migrating nucleus in post-mitotic cells of Closterium moniliferum var. submoniliferum (Zygnematales, Chlorophyta). Bull. Joetsu univ. Educ., 23, 705-712. Keywords: Cell division; Closterium; F-actin; microtubule; Nuclear migration; Zygnematales Strain(s): 182  Ogawa, T., Tamoi, M., Kimura, A., Mine, A., Sakuyama, H., Yoshida, E., Maruta, T., Suzuki, K., Ishikawa, T., Shigeoka, S. 2015 Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase leads to increases in biomass and wax ester production. Biotechnol. Biofuels, 8, 80 (article ID). Keywords: Euglena gracilis; Biofuel; Wax ester; Paramylon; Biomass; fructose-1,6-/sedoheptulose-1,7-bisphosphatase; Photosynthesis Strain(s): 48  PubMed: 26056534 DOI: 10.1186/s13068-015-0264-5 Ogawa, Y., Kimura, S., Saito, Y., Wada, M. 2012 Infrared study on deuteration of highly-crystalline chitin. Carbohydr. Polym., 90, 650-657. Keywords: α-Chitin; β-Chitin; Deuteration; FT-IR spectroscopy; X-ray diffraction Strain(s): 1396  PubMed: 24751089 DOI: 10.1016/j.carbpol.2012.05.092 Ogawa, Y., Kimura, S., Wada, M., Kuga, S. 2010 Crystal analysis and high-resolution imaging of microfibrillar a-chitin from Phaeocystis. J. Struct. Biol., 171, 111-116. Keywords: a-chitin microfibril; Phaeocystis; FT-IR spectroscopy; X-ray diffraction; high-resolution electron microscopy; lattice imaging Strain(s): 1396  PubMed: 20350601 DOI: 10.1016/j.jsb.2010.03.010 Ogawa, Y., Noda, K., Kimura, S., Kitaoka, M., Wada, M. 2014 Facile preparation of highly crystalline lamellae of (1 → 3)-B-D-glucanusing an extract of Euglena gracilis. Int. J. Biol. Macromol., 64, 415-419. Keywords: (1 → 3)-B-D-Glucan; In vitro synthesis; Laminaribiose phosphorylasea Strain(s): 48  PubMed: 24374085 DOI: 10.1016/j.ijbiomac.2013.12.027 Ogbonna, C., N. & Chioke, O. J. 2018 Effects of moringa extracts on sedimentation and growth of Chlorella variabilis. Int. J. Appl. Nat. Sci., 7, 131-138. Keywords: Cell Growth; Cell Sedimentation; Chlorella variabilis; Harvesting of Microalgae; Moringa Oliefera; Seed Extract Strain(s): 2541  Oh, S. J., Kim, D.-I., Sajima, T., Shimasaki, Y., Matsuyama, Y., Oshima, Y., Honjo, T., Yang, H.-S. 2008 Effects of irradiance of various wavelengths from light-emitting diodes on the growth of the harmful dinoflagellate Heterocapsa circularisquama and the diatom Skeletonema costatum. Fish. Sci., 74, 137-145. Keywords: Heterocapsa circularisquama; irradiance; light wavelengths; light-emitting diode; Skeletonema costatum Strain(s): 324  DOI: 10.1111/j.1444-2906.2007.01503.x Ohbayashi, R., Hirooka, S., Onuma, R., Kanesaki, Y., Hirose, Y., Kobayashi, Y., Fujiwara, T., Furusawa, C., Miyagishima, S. 2020 Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria. Front. Microbiol., 11, 786 (article ID). Keywords: CDS skew; chromosome replication; cyanobacteria; DnaA, GC skew; polyploidy Strain(s): 3708  PubMed: 32411117 DOI: 10.3389/fmicb.2020.00786 Oh-hama, T. & Miyachi, S. 1959 Effect of illumination and oxygen supply upon the levels of pyridine nucleotides in Chlorella cells. Biochim. Biophys. Acta, 34, 202-210. Strain(s): 2170  PubMed: 14428441 DOI: 10.1016/0006-3002(59)90248-3 Oh-hama, T. & Miyachi, S. 1960 Changes in levels of pyridine nucleotides in Chlorella cells during the course of photosynthesis. Plant Cell Physiol., 1, 155-162. Strain(s): 2170  Oh-hama, T., Moriyama, Y., Tamiya, H. 1965 Changes in contents and oxidoreductive states of pyridine nucleotides in Chlorella cells during their life cycle. In Beitr. zur Biochem. und Physiol. von Naturstoffen (Festschr. f. K. Mothes), Gustav Fischer, Jena, pp. 341-345. Strain(s): 2170  Oh-hama, T., Senger, H. 1978 Spectral effectiveness in chlorophyll and 5-amino levulinic acid formation during regreening of glucose-bleached cells of Chlorella protothecoides. Plant Cell Physiol., 19, 1295-1299. Keywords: ALA synthesis; blue light effect; Chlorella protothecoides; chlorophyll formation Strain(s): 227  DOI: 10.1093/oxfordjournals.pcp.a075711 Oh-hama, T., Seto, H., Miyachi, S. 1985 13C-Nuclear magnetic resonance studies of the biosynthesis of 5-aminolevulinic acid destined for chlorophyll formation in dark-grown Scenedesmus obliquus. Plant Sci., 42, 153-158. Keywords: biosynthesis of 5-aminolevulinic acid; chlorophyll biosynthesis; 13C-nuclear magnetic resonance; Scenedesmus obliquus Strain(s): 2280  DOI: 10.1016/0168-9452(85)90121-9 Oh-hama, T., Seto, H., Otake, N., Miyachi, S. 1982 13C-NMR evidence for the pathway of chlorophyll biosynthesis in algae. Biochem. Biophys. Res. Commun., 105, 647-652. Strain(s): 2280  DOI: 10.1016/0006-291X(82)91483-8 Oh-hama, T., Seto, H., Otake, N., Miyachi, S. 1983 13C-NMR spectra of chlorophylls a and b in green algae biosynthetically enriched with [1-13C] glutamate. FEBS Lett., 153, 404-408. Keywords: 5-aminolevulinic acid; chlorophyll a; chlorophyll b; 13C-NMR; [1-13C]glutamic acid; Scenedesmus obliquus Strain(s): 2280  Oh-hama, T., Siebelt, F., Furihata, K., Seto, H., Miyachi, S., Ohmori, K. 1986 31P-NMR studies on inorganic polyphosphates in microalgae. J. Phycol., 22, 485-490. Keywords: Anabaena cylindrica; Chlorella vulgaris 11h; inorganic polyphosphate; 13P nuclear magnetic resonance of algae Strain(s): 2280  DOI: 10.1111/j.1529-8817.1986.tb02492.x Ohki, K. 1999 A possible role of temperate phage in the regulation of Trichodesmium biomass. In Marine cyanobacteria and related organisms, Eds. by Charpy, L., Larkum, Bulletin de l'Institut Oceanographique, Monaco, Special paper, 19, pp. 287-292. Strain(s): 3600  Ohki, K. 2008 Intercellular localization of nitrogenase non-heterocystous Cyanobacterium (Cyanophyte), Trichodesmium sp. NIBB 1067. J. Oceanogr., 64, 211-216. Keywords: Trichodesmium spp.; nitrogenase; whole-cell immunolocalization; immunocytochemical detection; in situ hybridization; diazotrophic cyanobacteria; horseradish peroxidaseconjugated probe; 3,3'-diaminobenzidine Strain(s): 3600  Ohki, K. & Fujita, Y. 1992 Light-dependent maintenance of active nitrogenase in the non-heterocystous cyanophyte Trichodesmium sp. NIBB10687. In Research in photosynthesis, Ed. by Murata, N., Kluwer Academic Publishers, IV, pp. 103-106. Strain(s): 3600  Ohki, K., Falkowski, P.G., Rueter, J. G., Fujita, Y. 1991 Experimental study of the marine cyanophyte Trichodesmium sp., a nitrogen-fixing phytoplankton in tropical and subtropical sea area. In Marine biology: Its accomplishment and future prospect, Eds. by Mauchline, J., Nemoto, T., Hokusen-Sha, pp. 205-216. Strain(s): 3600  Ohki, K., Fujita, Y. 1982 Laboratory culture of the pelagic blue-green alga Trichodesmium thiebautii: conditions for unialgal culture. Mar. Ecol. Prog. Ser., 7, 185-190. Strain(s): 3600  Ohki, K., Fujita, Y. 1988 Aerobic nitrogenase activity measured as acetylene reduction in the marine non-heterocystous cyanobacterium Trichodesmium spp. grown under artificial conditions. Mar. Biol., 98, 111-114. Strain(s): 3600  DOI: 10.1007/BF00392665 Ohki, K., Kumazawa, S., Yoe, T-W., Ho, K-K. 1998 Improvement of artificial medium for the culture of marine microalgae and isolation and characterization of marine cyanobactria(Cyanophyta) from Singapore. In Asian Network on Microbial Researches, Eds. Gadjah Mada University, Riken and Science and Technology Agency, Japan 147-154. Strain(s): 3600  Ohki, K., Rueter, J. G., Fujita, Y. 1986 Cultures of the pelagic cyanophytes Trichodesmium erythraeum and T. thiebautii in synthetic medium. Mar. Biol., 91, 9-13. Strain(s): 3600  DOI: 10.1007/BF00397565 Ohki, K., Zehr, J. P., Falkowsk, P. G., Fujita, Y. 1991 Regulation of nitrogen-fixation by different nitrogen sources in the marine non-heterocystous cyanobacterium Trichodesmium sp. NIBB1067. Arch. Microbiol., 156, 335-337. Keywords: Cyanobacterium; Trichodesmium; Nitrogen-fixation; Nitrogenase Strain(s): 3600  DOI: 10.1007/BF00248706 Ohki, K., Zehr, J. P., Fujita, Y. 1992 Trichodesmium: Establishment of culture and characteristics of N2-fixation. In Marine Pelagic Cyanobacteria: Trichodesmium and other Diazotrophs, Eds. by Carpenter, E.J., Capone, D.G., Rueter, J.G., Springer, Dordrecht, 362, pp. 307-318. Strain(s): 3600  DOI: 10.1007/978-94-015-7977-3_20 Ohki, K., Zehr, J. P., Fujita, Y. 1992 Regulation of nitrogenase activity in relation to the light-dark regime in the filamentous non-heterocystous cyanobacterium Trichodesmium sp. NIBB 1067. J. Gen. Microbiol., 138, 2679-2685. Strain(s): 3600  DOI: 10.1099/00221287-138-12-2679 Ohko, Y., Nagao, Y., Okano, K., Sugiura, N., Fukuda, A., Yang, Y., Negishi, N., Takeuchi, M., Hanada, S. 2009 Prevention of Phormidium tenue biofilm formation by TiO2 photocatalysis. Microbes Environ., 24, 241-245. Keywords: Phormidium tenue; cyanobacteria; TiO2 photocatalyst; anti-biofilm; UV light Strain(s): 512  DOI: 10.1264/jsme2.ME09106 Ohkouchi, Y., Tajima, S., Nomura, M., Itoh, S. 2015 Inflammatory responses and potencies of various lipopolysaccharides from bacteria and cyanobacteria in aquatic environments and water supply systems. Toxicon, 97, 23-31. Keywords: Lipopolysaccharide (LPS); Purification; Endotoxin; Indigenous bacteria/cyanobacteria; Human monocytic cells; Cytokine secretion Strain(s): 44,  946  PubMed: 25666398 DOI: 10.1016/j.toxicon.2015.02.003 Ohkubo, N., Tomaru, Y., Yamaguchi, H., Kitatsuji, S., Mochida, K. 2017 Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major). Fish Physiol. Biochem., 43, 1603–1612. Strain(s): 6  PubMed: 28695381 DOI: 10.1007/s10695-017-0396-6 Ohmori, K. & Ohmori, M. 1988 Ammonium assimilation in the blue-green alga Spirulina platensis. Jpn. J. Phycol. (Sôrui), 36, 12-16. Strain(s): 39  Ohmori, K., Hirose, M., Ohmori, M. 1993 An increase in the intracellular concentration of cAMP triggers formation of an algal mat by the cyanobacterium Spirulina platensis. Plant Cell Physiol., 34, 169-171. Keywords: cyanobacteria (blue-green algae); cyclic AMP; motility; Spirulina platensis Strain(s): 39  DOI: 10.1093/oxfordjournals.pcp.a078394 Ohmori, M. 1984 Effects of preillumination on dark nitrogen fixation and respiration by Anabaena cylindrica. Plant Cell Physiol., 25, 125-130. Keywords: acetylene reduction; Anabaena; dark nitrogen fixation; respiration Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a076684 Ohmori, M. 1989 cAMP in Anabaena cylindrica: Rapid changes in cellular levels in response to changes in extracellular environments. Plant Cell Physiol., 30, 911-914. Keywords: Anabaena cylindrica; cAMP; cyanobacteria; membrane potential Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a077824 Ohmori, M. & Hattori, A. 1971 Heterocyst and nitrogen fixation in Anabaena cylindrica. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, pp. 598-601. Strain(s): 19  Ohmori, M. & Hattori, A. 1971 Nitrogen fixation and heterocysts in the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 12, 961-967. Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a078349 Ohmori, M. & Hattori, A. 1972 Effect of nitrate on nitrogen-fixation by the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 13, 589-599. Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a074772 Ohmori, M. & Hattori, A. 1974 Effect of ammonia on nitrogen fixation by the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 15, 131-142. Strain(s): 19  Ohmori, M. & Hattori, A. 1978 Transfer change in the ATP pool of Anabaena cylindrica associated with ammonia assimilation. Arch. Mikrobiol., 117, 17-20. Strain(s): 19  Ohmori, M. & Hattori, A. 1980 C2H2 reduction and 15N2 fixation in blue-green algae. In Molybdenum Chemistry of Biological Significance, Eds. by Newton, W. E. & Otsuka, S., Plenum Publishing Co., New York, pp. 95-104. Strain(s): 19  Ohmori, M. & Kanda, J. 1987 H+ and K+ efflux associated with NH4+ uptake in Anabaena cylindrica cells in the dark. J. Gen. Appl. Microbiol., 33, 311-319. Strain(s): 19  DOI: 10.2323/jgam.33.311 Ohmori, M. & Ohmori, K. 1982 Application of glass fiber paper chromatography to measurement of 15N content of amino acids. Radioisotopes, 31, 651-653. Keywords: glass fiber paper chromatography; nitrogen-15-amino acid Strain(s): 19  Ohmori, M. & Ohmori, K. 1985 Differential effects of methionine sulfoximine on light and dark uptake of nitrate by Anabaena cylindrica. Plant Cell Physiol., 26, 957-960. Keywords: Anabaena cylindrica; methionine sulfoximine; nitrate uptake; nitrite uptake Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a076991 Ohmori, M., Hasunuma, K., Furukawa, K. 1988 GTP-binding proteins in a cyanobacterium Anabaena cylindrica. Biochem. Biophys. Res. Commun., 151, 215-221. Strain(s): 19  Ohmori, M., Miyachi, S., Okabe, K., Miyachi, S. 1984 Effects of ammonia on respiration, adenylate levels, amino acid synthesis and CO2 fixation in cells of Chlorella vulgaris 11h in darkness. Plant Cell Physiol., 25, 749-756. Keywords: adenylate level; amino acid; ammonia effect; Chlorella vulgaris; dark CO2 fixation; respiration Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a076768 Ohmori, M., Oh-hama, T., Furihata, K., Miyachi, S. 1986 Effect of ammonia on cellular pH of Anabaena cylindrica determined with 31P NMR spectroscopy. Plant Cell Physiol., 27, 563-566. Keywords: ammonia effect; Anabaena cylindrica; 31P NMR spectroscopy; cellular pH Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a077134 Ohmori, M., Ohmori, K., Hasunuma, K. 1988 Rapid change in cyclic 3',5'-AMP concentration triggered by a light-off or light-on signal in Anabaena cylindrica. Arch. Mikrobiol., 150, 203-204. Strain(s): 19  DOI: 10.1007/BF00425163 Ohmori, M., Ohmori, K., Strotman, H. 1977 Inhibition of nitrate uptake by ammonia in a blue-green alga, Anabaena cylindrica. Arch. Mikrobiol., 114, 225-229. Strain(s): 19  DOI: 10.1007/BF00446866 Ohmori, M., Saito, T., Ohmori, K. 1985 Occurrence of glutamine-2-oxoacid transaminase activity in the blue-green alga, Anabaena cylindrica. J. Gen. Appl. Microbiol., 31, 171-176. Strain(s): 19,  2170  DOI: 10.2323/jgam.31.171 Ohmori, M., Satoh, Y., Urata, K. 1989 Light-induced accumulation of lactate and succinate in Anabaena cylindrica (Cyanophyta). Arch. Mikrobiol., 151, 101-104. Strain(s): 19  DOI: 10.1007/BF00414421 Ohmura, Y., Kawachi, M., Kasai, F., Watanabe, M. M., Takeshita, S. 2006 Genetic combinations of symbionts in a vegetatively reproducing lichen, Parmotrema tinctorum, based on its rDNA sequences. Bryologist, 109, 43-59. Keywords: diversity; ITS rDNA; mycobiont; Parmotrema tinctorum; photobiont; selectivety; Trebouxia corticola; vegetative reproduction. Strain(s): 1446,  1447,  1448,  1449,  1450,  1451,  1452,  1453,  1454,  1455  DOI: 10.1639/0007-2745(2006)109[0043:GCOSIA]2.0.CO;2 Ohmura, Y., Takeshita, S., Kawachi, M. 2019 Photobiont diversity within populations of a vegetatively reproducing lichen, Parmotrema tinctorum, can be generated by photobiont switching. Symbiosis, 77, 59–72. Keywords: Lichenized fungi; Microalgae; rbcL; Trebouxia corticola; Selectivity; Vegetative reproduction Strain(s): 1446,  1447,  1448,  1449,  1450,  1451,  1452,  1453,  1454,  1455  DOI: 10.1007/s13199-018-0572-1 Ohnuma, M., Kuroiwa, T., Tanaka, K. 2011 Optimization of cryopreservation conditions for the unicellular red alga Cyanidioschyzon merolae. J. Gen. Appl. Micobiol.,, 57, 137-143. Keywords: cryoinjury; cryopreservation; Cyanidioschyzon merolae; unicellular red alga Strain(s): 1332,  3377  PubMed: 21817825 DOI: 10.2323/jgam.57.137 Ohnuma, M., Misumi, O., Fujiwara, T., Watanabe, S., Tanaka, K., Kuroiwa, T. 2009 Transient gene suppression in a red alga, Cyanidioschyzon merolae 10D. Protoplasma, 236, 107-112. Keywords: Antisense suppression; Cyanidioschyzon merolae; Catalase; GFP; Transformation Strain(s): 3377  PubMed: 19533298 DOI: 10.1007/s00709-009-0056-5 Ohnuma, M., Yokoyama, T., Inouye, T., Sekine, Y., Tanaka, K. 2008 Polyethylene glycol (PEG)-mediated transient gene expression in a Red Alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 49, 117-120. Keywords: Cyanidioschyzon merolae; Hemagglutinin; Polyethylene glycol; Transformation; Transient expression system Strain(s): 3377  PubMed: 18003671 DOI: 10.1093/pcp/pcm157 Ohta, N., Matsuzaki, M., Misumi, O., Miyagishima, S., Nozaki, H., Tanaka, K., Shin-I, T., Kohara, Y., Kuroiwa, T. 2003 Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res., 10, 67-77. Keywords: Cyanidioschyzon merolae; red algae; plastid; genome sequencing Strain(s): 1332,  3377  PubMed: 12755171 DOI: 10.1093/dnares/10.2.67 Ohta, N., Nagashima, H., Kawano, S., Kuroiwa, T. 1992 Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1. Plant Cell Physiol., 33, 657-661. Keywords: chloroplast DNA; Cyanidium caldarium; transfer RNA-lysine Strain(s): 250,  2137  DOI: 10.1093/oxfordjournals.pcp.a078302 Ohta, N., Satao, N., Ueda, K., Kuroiwa, T. 1997 Analysis of a plastid gene cluster reveals a close relationship between Cyanidioschyzon and Cyanidium. J. Plant Res., 110, 235-245. Keywords: Cyanidioschyzon merolae; Cyanidium caldarium; Plastid genome; Rhodophyta Strain(s): 3377  DOI: 10.1007/BF02509312 Ohta, N., Sato, N., Kuroiwa, T. 1998 Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res., 26, 5190-5198. Strain(s): 1332,  3377  PubMed: 9801318 DOI: 10.1093/nar/26.22.5190 Ohta, N., Sato, N., Kuroiwa, T. 1999 The organellar genomes of Cyanidioschyzon merolae. In Enigmatic Microorganisms and Life in Extreme Environments, Ed. by Seckbach, J., Kluwer Academic Publishers, pp. 139-149. Strain(s): 3377  Ohta, S., Chang, T., Aozasa, O., Kondo, M., Miyata, H. 1992 Sustained production of arachidonic and eicosapentaenoic acids by the red alga Porphyridium purpureum cultured in a light/dark cycle. J. Ferment. Bioengin., 74, 398-402. Strain(s): 2140,  2168,  2256  DOI: 10.1016/0922-338X(92)90040-2 Ohta, S., Miyamoto, K., Miura, Y. 1987 Hydrogen evolution as a consumption mode of reducing equivalents in green algal fermentation. Plant Physiol., 83, 1022-1026. Strain(s): 2169,  3284  PubMed: 16665317 DOI: 10.1104/pp.83.4.1022 Ohtaka,K., Hori, K., Kanno, Y., Seo, M., Ohta, H. 2017 Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens. Plant Physiol., 174, 1621-1632. Strain(s): 2285  PubMed: 28533212 DOI: 10.1104/pp.17.00274 Oikawa, E. Ishibashi, Y., 2004 Species specificity of musty odor producing Phormidium tenue in Lake Kamafusa. Wat. Sci. Tech., 49, 41-46. Keywords: 16S-rDNA sequence; 2-methylisoborneol; musty odor; Phormidium tenue phylogenetic tree Strain(s): 21,  30,  33,  41,  73,  76,  512,  611  PubMed: 15237605 DOI: 10.2166/wst.2004.0529 Oikawa, E., Ishibashi, Y., Abe, T., Umetsu, H. 2000 Phylogenetic classification of musty odor and/or toxic compounds producing cyanobacteria. Environ. Eng. Res., 37, 183-191 (in Japanese with English summary). Keywords: cyanobacteria; musty odor; 16S ribosomal RNA; PCR; phylogenetic trees Strain(s): 21,  30,  33,  41,  73,  76,  512  DOI: 10.11532/proes1992.37.183 Oikawa, E., Ohnuma, T., Shimizu, A., Ishibashi, Y. 1994 Phylogenetic studies on musty odor producing cyanobacteria using the 16S ribosomal RNA [16S ribosômu RNA enki-hairetsu no hikaku ni yoru kabi-shû sansei ransô-rui no bunrui]. J. Jpn. Water Works Assoc. [Suidô-Kyôkai Zasshi], 63(12), 56-63 (in Japanese). Keywords: musty odor; gene; cyanobacteria Strain(s): 36,  76,  512  Oishi, S. & Watanabe, M. F. 1986 Acute toxicity of Microcystis aeruginosa and its cardiovascular effects. Environ. Res., 40, 518-524. Strain(s): 3349  DOI: 10.1016/S0013-9351(86)80126-8 Ok, J. H., Jeong, H. J., Lim, A. S., Kang, H. C., You, J. H., Park, S. A., Eom, S. H. 2023 Lack of mixotrophy in three Karenia species and the prey spectrum of Karenia mikimotoi (Gymnodiniales, Dinophyceae). Algae, 38, 39-55. Keywords: feeding; harmful algal bloom; Kareniaceae; lysis; protist; red tide; trophic mode Strain(s): 4541  DOI: 10.4490/algae.2023.38.2.28 Okamoto, N. & Inouye, I. 2005 The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist, 156, 163-179. Keywords: beta-tubulin; Cryptophyta; Katablepharidophyta/Kathablepharida; Katablepharis/Kathablepharis japonica; Leucocrypta; Leucocryptos marina; phylogeny; SSU rDNA Strain(s): 1333,  1334,  1335  PubMed: 16171184 DOI: 10.1016/j.protis.2004.12.003 Okamoto, T., Kim, D., Oda, T., Matsuoka, K., Ishimatsu, A., Muramatsu, T. 2000 Concanavalin A-induced discharge of glycocalyx of raphidophycean flagellates, Chattonella marina and Heteroshigma akashiwo. Biosci. Biotechnol. Biochem., 64, 1767-1770. Keywords: red tide; concanavalin A; glycocalyx; phytoplankton Strain(s): 6  PubMed: 10993174 DOI: 10.1271/bbb.64.1767 Okamoto, Y., Haraguchi, Y., Sawamura, N., Asahi, T., Shimizu, T. 2020 Mammalian cell cultivation using nutrients extracted from microalgae. Biotechnol. Prog., 36, e2941 (article ID). Keywords: acidic hydrolysis; amino acids; glucose; mammalian cell culture; microalgae; nutrients Strain(s): 27,  39,  49,  2170  PubMed: 31756286 DOI: 10.1002/btpr.2941 Okamura, H., Aoyama, I., Liu, D., Maguire, R. J., Pacepavicius, G. J., Lau, Y. L. 2000 Fate and ecotoxicity of the new antifouling compound irgarol 1051 in the aquatic environment. Water Res., 34, 3523-3530. Keywords: antifouling compound; degradation product; ecotoxicity; fate; berbicide; Irgarol 1051; M1; Seto Inland Sea Japan; transformation Strain(s): 35  DOI: 10.1016/S0043-1354(00)00095-6 Okamura, H., Kitano, S., Toyota, S., Harino, H., Thomas, K. V. 2009 Ecotoxicity of the degradation products of triphenylborane pyridine (TPBP) antifouling agent. Chemosphere, 74, 1275-1278. Keywords: Artemia; bioassay; biocide; biphenyl; marina; Skeletonema Strain(s): 323  PubMed: 19095285 DOI: 10.1016/j.chemosphere.2008.11.014 Okamura, H., Piao, M., Aoyama, I., Sudo, M., Okubo, T., Nakamura, M. 2002 Algal growth inhibition by river water pollutants in the agricultural area around Lake Biwa, Japan. Environ. Pollut., 117, 411-419. Keywords: Algal bioassay; Herbicide; Lake Biwa; Runoff; Simetryn Strain(s): 35  PubMed: 11911525 DOI: 10.1016/S0269-7491(01)00196-8 Okamura, K. 1992 Growth characteristics of Skeletonema costatum for algal growth potential. Kanagawa-ken Kankyô Kagaku Sentâ Kenkyû Hôkoku, 15, 12-15 (in Japanese with English title). Strain(s): 324  Okamura, T., Kondo, R. 2015 Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan. Protist, 166, 409-421. Keywords: Nanoflagellate; Placididea; Stramenopiles; Ultrastructure Strain(s): 3647  PubMed: 26202992 DOI: 10.1016/j.protis.2015.06.003 Okano, K., Miyata, N., Ozaki, Y. 2015 Whole genome sequence of the non-microcystin-producing Microcystis aeruginosa strain NIES-44. GenomeA, 3, e00135-15 (article ID). Strain(s): 44  PubMed: 25792056 DOI: 10.1128/genomeA.00135-15 Okino, T., Matsuda, H., Murakami, M., Yamaguchi, K. 1993 Microginin, an angiotensin-converting enzyme inhibitor from the blue-green alga Microcystis aeruginosa. Tetrahedron Letters, 34, 501-504. Strain(s): 100  DOI: 10.1016/0040-4039(93)85112-A Okino, T., Matsuda, H., Murakami, M., Yamaguchi, K. 1995 New microviridins, elastase inhibitors from the blue-green alga Microcystis aeruginosa. Tetrahedron, 51, 10679-10686. Strain(s): 298  DOI: 10.1016/0040-4020(95)00645-O Okino, T., Murakami, M., Haraguchi, R., Munekata, H., Matsuda, H., Yamaguchi, K. 1993 Micropeptins A and B, plasmin and trypsin inhibitors from the blue-green alga Microcystis aeruginosa. Tetrahedron Letters, 34, 8131-8134. Strain(s): 100  DOI: 10.1016/S0040-4039(00)61471-5 Okino, T., Sun, Q., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Nostopeptins A and B, elastase inhibitors from the cyanobacterium Nostoc minutum. J. Nat. Prod., 60, 158-161. Strain(s): 26  DOI: 10.1021/np960649a Okubo, Y., Inoue, T., Yokoto, K. 2012 Estimating bioavailability of soil particulate phosphorus toMicrocystis aeruginosa. J. Appl. Phycol., 24, 1503-1507. Keywords: Particulate phosphorus; Bioavailable phosphorus; Microcystis aeruginosa; Cyanobacteria; Sequential phosphorus extraction Strain(s): 44  DOI: 10.1007/s10811-012-9809-1 Okuda, Y., Hiraiwa, M., Shimizu, N., Hashimoto, S. 2023 Production of volatile organic iodine compounds by the marine cyanobacterium Calothrix parasitica under different light intensities. Mar. Chem., 248, 104211 (article ID). Keywords: Iodinated hydrocarbons; Halogenated hydrocarbons; Light effects; Phytoplankton Strain(s): 267  DOI: 10.1016/j.marchem.2023.104211 Okumura, C., Saffreena, N., Rahman, M. A., Hasegawa, H., Miki, O., Takimoto, A. 2015 Economic efficiency of different light wavelengths and intensities using LEDs for the cultivation of green microalga Botryococcus braunii (NIES-836) for biofuel production. Environ. Prog. Sustain. Energy, 34, 269-275. Keywords: microalgae; Botryococcus braunii (NIES-836); growth efficiency; light-emitting diodes (LEDS); economic efficiency Strain(s): 836  DOI: 10.1002/ep.11951 Okumura, Y., Koyama, J., Takaku, H., Satoh, H. 2001 Influence of organic solvents on the growth of marine microalgae. Arch. Environ. Contam. Toxicol., 41, 123-128. Strain(s): 6,  324  PubMed: 11462135 DOI: 10.1007/s002440010229 Okuyama, H., Kogame, K., Takeda, S. 1993 Phylogenetic significance of the limited distribution of octadecapentaenoic acid in Prymnesiophytes and photocynthetic dinoflagellates. Proc. NIPR Symp. Polar Biol., 6, 21-26. Strain(s): 353  Okuyama, H., Morita, N., Kogame, K. 1992 Occurrence of octadecapentaenoic acid in lipids of a cold stenothermic alga, prymnesiophyte strain B. J. Phycol., 28, 465-472. Keywords: Antarctic; cold stenotherm; fatty acid composition; octadecapentaenoic acid; prymnesiophytes; psychrophile Strain(s): 8  DOI: 10.1111/j.0022-3646.1992.00465.x Oliveira, C. Y. B., Oliveira, C. D. L., Prasad, R., Ong, H. C., Araujo, E. S., Shabnam, N., Gálvez, A. O. 2021 A multidisciplinary review of Tetradesmus obliquus: a microalga suitable for large-scale biomass production and emerging environmental applications. Rev. Aquac., 13, 1594-1618. Keywords: Acutodesmus obliquus; bibliometric analysis; biorefinery; renewable energy; Scenedesmus obliquus; wastewater treatment Strain(s): 2280  DOI: 10.1111/raq.12536 Oliveira, E. D. C. de, Cunha, A. C. da, Silva, N. B. da, Castelo-Branco, R., Morais, J., Schneider, M. P. C., Faustino, S. M. M., Ramos, V., Vasconcelos, V. 2019 Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River. Phytotaxa, 387, 269-288. Keywords: Amazonia; Limnothrix; Polyphasic approach; Pseudanabaena; 16S rRNA phylogeny; Algae Strain(s): 504,  512  DOI: 10.11646/phytotaxa.387.4.1 Omata, T. & Murata, N. 1986 Glucolipid synthesis activities in cytoplasmic and the thylakoid membranes from the cyanobacterium Anacystis nidulans. Plant Cell Physiol., 27, 485-490. Keywords: Anacystis nidulans; cyanobacterium; cytoplasmic membrane; glucolipid; lipid biosynthesis; thylakoid membrane Strain(s): 2170,  3277  DOI: 10.1093/oxfordjournals.pcp.a077124 Omura, T., Umita, T., Aizawa, J., Komatsu, Y., Ishizaki, M., Onuma, M. 1991 Accumulation of extracellular non-volatile organic acids in batch cultures of Chlorella vulgaris and Microcystis aeruginosa. Jpn. J. Water Poll. Res., 14, 615-623 (in Japanese with English summary). Keywords: Chlorella vulgaris; Microcystis aeruginosa; batch culture; non-volatile organic acids; dissolved organic carbon Strain(s): 87,  227  Onduka, T., Kakuno, A., Kono, K., Ito, K., Mochida, K., Fujii, K. 2012 Toxicity of chlorothalonil to marine organisms. Fish. Sci., 78, 1301-1308. Keywords: Antifouling biocides; Toxicity; Early-life-stage Toxicity test; Predicted no-effect concentration Strain(s): 324  DOI: 10.1007/s12562-012-0562-9 Onduka, T., Kono, K., Ito, M., Ohkubo, N., Hano, T., Ito, K., Mochida, K. 2020 Ecological risk assessment of an antifouling biocide triphenyl (octadecylamine) boron in the Seto Inland Sea, Japan. Mar. Pollut. Bull., 157, 111320 (article ID). Keywords: Algal growth inhibition test; Crustacean reproduction test; Early-life stage toxicity test; Species sensitivity distribution Strain(s): 324  PubMed: 32658685 DOI: 10.1016/j.marpolbul.2020.111320 Onduka, T., Mochida, K., Harino, H., Ito, K., Kakuno, A., Fujii, K. 2010 Toxicity of metal pyrithione photodegradation products to marine organisms with indirect evidence for their presence in seawater. Arch. Environ. Contam. Toxicol., 58, 991-997. Strain(s): 324  PubMed: 19967345 DOI: 10.1007/s00244-009-9430-8 Onduka, T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of degradation products of the antifouling biocide pyridine triphenylborane to marine organisms. Arch. Environ. Contam. Toxicol., 65, 724-732. Strain(s): 324  PubMed: 23929384 DOI: 10.1007/s00244-013-9945-x Onduka, T., Ojima, D., Kakuno, A., Mochida, K., Ito, K., Koyama, J., Fujii, K. 2012 Nitrated polycyclic aromatic hydrocarbons in the marine environment: acute toxicities for organisms at three trophic levels. Jpn. J. Environ. Toxicol., 15, 1-10. Keywords: alga; crustacean, fish, nitro-PAHs; predicted no effect concentrations Strain(s): 324  DOI: 10.11403/jset.15.1 Onduka,T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of the antifouling biocide Sea-Nine 211 to marine algae, crustacea, and a polychaete. Fish. Sci., 79, 999-1006. Keywords: Risk assessment; Ecological toxicity; Coastal area of Japan; Perinereis nuntia; Sediment toxicity test; No-observed-effect concentration Strain(s): 324  DOI: 10.1007/s12562-013-0678-6 Onishi, Y., Mohri, Y., Tuji, A., Ohgi, K., Yamaguchi, A., Imai, I. 2014 The seagrass Zostera marina harbors growth-inhibiting bacteria against the toxic dinoflagellate Alexandrium tamarense. Fish. Sci., 80, 353-362. Keywords: Toxic blooms; Alexandrium tamarense; Algicidal bacteria; Seagrass; Zostera marina; Mitigation; Prevention Strain(s): 1  DOI: 10.1007/s12562-013-0688-4 Onji, M., Nakano, S.-I., Suzuki, S. 2003 Virus-like particles suppress growth of the red-tide-forming marine dinoflagellate Gymnodinium mikimotoi. Mar. Biotechnol., 5, 435-442. Keywords: Gymnodinium mikimotoi; virus; red tide Strain(s): 3,  7  PubMed: 14730426 DOI: 10.1007/s10126-002-0085-y Ono, M., Sawada, K., Kubota, M., Shiraiwa, Y. 2009 Change of the unsaturation degree of alkenone and alkenoate during acclimation to salinity change in Emiliania huxleyi and Gephyrocapsa oceanica with reference to palaeosalinity indicator. Res. Org. Geochem., 25, 53-60. Strain(s): 837,  839  DOI: 10.20612/rog.25.0_53 Ono, T., Murata, N., Fujita, T. 1983 Thermal analysis of membrane lipids from the blue-green algae Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 24, 635-639. Keywords: Anabaena variabilis; Anacystis nidulans; blue-green alga; lipid; thermal analysis; thylakoid membrane Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a076559 Ono, Y., Okamura,H., Kawara, O., Aoyama, I., Oda, Y. 1999 Genotoxicity and ecotoxicity of sediment in road runoff. J. Jpn. Soc. Wat. Environ., 22, 561-567 (in Japanese with English summary). Keywords: road runoff; road sediment; genotoxicity; growth inhibition; acute toxicity Strain(s): 35  Onodera, H., Oshima, Y., Watanabe, M. F., Watanabe, M., Bolch, C. J., Blackburn, S., Yasumoto, T. 1996 Screening of paralytic shellfish toxins in freshwater cyanobacteria and chemical confirmation of the toxins in cultured Anabaena circinalis from Australia. In Intergovernmental Oceanographic Commissions of UNESCO, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., pp. 563-566. Strain(s): 1063,  1068,  1079,  1084,  1090,  1093,  1099  Onyshchenko, A., Roberts, W. R., Ruck, E. C., Lewis, J. A., Alverson, A. J. 2021 The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis. New Phytol., 232, 1750-1764. Keywords: apochloritic; B-ketoadipate pathway; Entner-Doudoroff Pathway; glycolysis; lignin; mixotrophy; oxidative pentose phosphate pathway; photosynthesis Strain(s): 3581  PubMed: 34379807 DOI: 10.1111/nph.17673 Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J. 2019 A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta). Am. J. Bot., 106, 560-572. Keywords: Nitzschia; apochloritic; chloroplast; photosynthesis; phylogeny; plastid Strain(s): 3581  PubMed: 30958893 DOI: 10.1002/ajb2.1267 Ooi, T., Kusumi, T., Kakisawa, H., Watanabe, M. M. 1989 Structure of cyanoviridin RR, a toxin from the blue-green alga, Microcystis viridis. J. Appl. Phycol., 1, 31-38. Keywords: blue-green alga; Microcystis viridis; cyanoviridin RR; microcystin RR, toxins Strain(s): 102  Örs, E. D., Alkan, S. B., Öksüz, A. 2022 Possible effect of astaxanthin on obesity-related increased COVID-19 infection morbidity and mortality. Curr. Nutr. Food Sci., 18, 265-273. Keywords: Haematococcus pluvialis; Obesity; adipose tissue; astaxanthin; coronavirus disease 2019; inflammation Strain(s): 144  DOI: 10.2174/1573401317666211011105732 Osafune, T. 1973 Three-dimensional structures of giant mitochondria, dictyosomes and “concentric lamellar bodies” formed during the cell cycle of Euglena gracilis (Z) in synchronous culture. J. Electron Microscopy, 22, 51-61. Strain(s): 48  Osafune, T., Ehara, T., Ito, A., Hase, E. 1990 Incorporation of cytoplasmic structures by developing proplastids in dark-grown Euglena gracilis cells transferred to an inorganic medium in darkness. J. Electr. Microsc., 39, 168-171. Keywords: Euglena gracilis; dark proplastid development; incorporation; cytoplasmic structure Strain(s): 48  DOI: 10.1093/oxfordjournals.jmicro.a050798 Osafune, T., Ehara, T., Sumida, S., Hase, E. 1985 Interactions between the nucleus and cytoplasmic organelles durihg the cell cycle of Euglena gracilis in synchronized cultures. II. Associations between the nucleus and chloroplasts at an early stage of the cell cycle under photoautotrophic conditions. Plant Cell Physiol., 26, 263-270. Keywords: cell cycle; chloroplast nucleoid; chloroplast-nucleus connection; chromosome; Euglena gracilis Strain(s): 48  Osafune, T., Ehara, T., Tahara, M., Hase, E. 1990 Effects of blue and red light on chloroplast development in dark-grown wax-rich cells of Euglena gracilis transferred to inorganic medium. J. Electr. Microsc., 39, 254-259. Keywords: Euglena gracilis; blue and red light; chloroplast development Strain(s): 48  DOI: 10.1093/oxfordjournals.jmicro.a050812 Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1972 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. I. Some characteristics of changes in subcellular structures during the cell cycle, especially in formation of giant mitochondria. Plant Cell Physiol., 13, 211-227. Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a074732 Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1972 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. II. Association of mitochondria and the chloroplast at an early developmental stage. Plant Cell Physiol., 13, 981-989. Strain(s): 2235  Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. III. Three-dimensional structures of mitochondria in the cells at intermediate stages of the growth phase of the cell cycle. J. Electr. Microsc., 24, 247-252. Strain(s): 2235  Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. I. Some characteristics of changes in the morphology of mitochondria and oxygen-uptake activity of cells. Plant Cell Physiol., 16, 313-326. Strain(s): 48  Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. II. Modes of division of giant mitochondria. J. Electron Microscopy, 24, 33-39. Strain(s): 48  Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. III. Three-dimensional structures of mitochondria after division of giant forms. J. Electron Microscopy, 24, 283-286. Strain(s): 48  Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1976 Electron microscope studies of the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. IV. Mitochondria in dividing cells. J. Electr. Microsc., 25, 261-269. Strain(s): 2235  Osafune, T., Schiff. J. A., Hase, E. 1990 Immunogold localization of LHCP II apoprotein in the Golgi of Euglena. Cell Struct. Funct., 15, 99-105. Keywords: Euglena; Golgi apparatus; immunogold localization; LHCP II Strain(s): 48  DOI: 10.1247/csf.15.99 Osafune, T., Sumida, S., Ehara, T., Hase, E. 1989 Three-dimensional distribution of ribulose-1,5-bisphosphate carboxylase/oxygenase in chloroplasts of actively photosynthesizing cell of Euglena gracilis. J. Electr. Microsc., 38, 399-402. Keywords: Euglena gracilis Z; immunoelectron microscopy; chloroplast; RuBisCO; three-dimensional distribution Strain(s): 48  DOI: 10.1093/oxfordjournals.jmicro.a050755 Osafune, T., Sumida, S., Ehara, T., Kodama, M., Hase, E. 1990 Immunoelectron microscopic evidence for the occurrence of ribulose 1,5-bisphosphate carboxylase/oxygenase in "propyrenoids" of Euglena gracilis. J. Electr. Microsc., 39, 101-104. Keywords: chloroplast development; Euglena; propyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase; immunocytochemistry Strain(s): 48  DOI: 10.1093/oxfordjournals.jmicro.a050782 Osafune, T., Yokota, A., Sumida, S., Hase, E. 1990 Immunogold localization of ribulose-1,5-bisphosphate carboxylase with reference to pyrenoid morphology in chloroplasts of synchronized Euglena gracilis cells. Plant Physiol., 92, 802-808. Strain(s): 48  PubMed: 16667352 DOI: 10.1104/pp.92.3.802 Ota, S. & Kawano, S. 2017 Extraction and Molybdenum Blue-based Quantification of Total Phosphate and Polyphosphate in Parachlorella. Bio-protocol, 7, e2539 (article ID). Keywords: Alga; Chlorella; Parachlorella; Phosphorus; Polyphosphate; Molybdenum blue reaction Strain(s): 2152  DOI: 10.21769/BioProtoc.2539 Ota, S. & Vaulot, D. 2012 Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea. Protist, 163, 91-104. Keywords: chlorarachniophytes; Lotharella; Mediterranean Sea; RCC375, RCC376; taxonomy Strain(s): 2584  PubMed: 21497132 DOI: 10.1016/j.protis.2011.02.004 Ota, S., Fuchida, S., Yamaguchi, H., Yamagishi, T., Yamamoto, H., Koshikawa, H., Kawachi, M. 2022 Propidium iodide staining and flow cytometry-based assessment of heavy metal impact on marine phytoplankton. Cytologia, 87, 177-187. Keywords: Cyanobacteria; Deep-sea mining; Flow cytometry; Heavy metal contaminant; Microalgae; On-chip sort Strain(s): 969,  981,  2670  DOI: 10.1508/cytologia.87.177 Ota, S., Matsuda, T., Takeshita, T., Yamazaki, T., Kazama, Y., Abe, T., Kawano, S. 2013 Phenotypic spectrum of Parachlorella kessleri (Chlorophyta) mutants produced by heavy-ion irradiation. Bioresour. Technol., 149, 432-438. Keywords: Algae; Breeding; Parachlorella; Heavy-ion irradiation; Mutation Strain(s): 2152  PubMed: 24135567 DOI: 10.1016/j.biortech.2013.09.079 Ota, S., Oshima, K., Yamazaki, T., Kim, S., Yu, Z., Yoshihara, M., Takeda, K., Takeshita, T., Hirata, A., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2016 Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure. Biotechnol. Biofuels, 9, 13 (article ID). Keywords: Genome; Green alga; Lipid body; Parachlorella kessleri; RNA-seq; Whole-genome sequence; Transcriptome; 3D-TEM Strain(s): 2152  PubMed: 26811738 DOI: 10.1186/s13068-016-0424-2 Ota, S., Oshima, K., Yamazaki, T., Takeshita, T., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2019 The Parachlorella genome and transcriptome endorse active RWP-RK, meiosis and flagellar genes in trebouxiophycean algae. Cytologia, 84, 323-330. Keywords: Evolution; Flagellum; MID; Meiosis; Parachlorella; RWP-RK Strain(s): 2152  DOI: 10.1508/cytologia.84.323 Ota, S., Yamaguchi, H., Vanel, F., Fuchida, S., Koshikawa, H., Yamagishi, T., Yamamoto, H., Kawachi, M. 2020 Differential heavy metal sensitivity in seven algal species from the NIES culture collection based on delayed fluorescence assays. Phycol. Res., 68, 41-49. Strain(s): 969,  971,  981,  1001,  1310,  2587,  2670  DOI: 10.1111/pre.12403 Ota, S., Yoshihara, M., Yamazaki, T., Takeshita, T., Hirata, A., Konomi, M., Oshima, K., Hattori, M., Bišová, K., Zachleder, V., Kawano, S. 2016 Deciphering the relationship among phosphate dynamics, electron-dense body and lipid accumulation in the green alga Parachlorella kessleri. Sci Rep, 6, 25731 (article ID). Strain(s): 2152  PubMed: 27180903 DOI: 10.1038/srep25731 Ota, S., Yoshimura, K., Kosugi, C., Kawano, S. 2023 Taxonomic and physiological studies of Parachlorella kimitsuensis sp. nov. (Trebouxiophyceae), which shows high ammonium tolerance. Algal Res., 71, 103054 (article ID). Keywords: Chlorella; Halophiles; High ammonium; Parachlorella, Parachlorella kimitsuensis sp. nov.; Remediation; Steelmaking wastewater treatment Strain(s): 2152,  2169,  2273,  2275  DOI: 10.1016/j.algal.2023.103054 Otaki, R., Oishi, Y., Abe, S., Fujiwara, S., Sato, N. 2019 Regulatory carbon metabolism underlying seawater-based promotion of triacylglycerol accumulation in Chlorella kessleri. Bioresour. Technol., 289, 121686 (article ID). Keywords: Carbon metabolism; Chlorella kessleri; Gene expression; Seawater-based biofuel; Triacylglycero Strain(s): 2152  PubMed: 31238290 DOI: 10.1016/j.biortech.2019.121686 Othman, F. S., Jamaluddin, H., Ibrahim, Z., Hara, H., Yahya, N. A., Iwamoto, K., Mohamad, S. E. 2019 Production of α-linolenic acid by an oleaginous green algae Acutodesmus obliquus isolated from Malaysia. J. Pure Appl. Microbiol., 13, 1297-1306. Keywords: Acutodesmus obliquus; Chlorella sp.; Chlorella vulgaris; Lipid; Malaysia Strain(s): 1269  DOI: 10.22207/JPAM.13.3.01 Otsuka, S., Suda, S., Li, R., Matsumoto, S., Watanabe, M. M. 2000 Morphological variability of colonies of Microcystis morphospecies in culture. J. Gen. Appl. Microbiol., 46, 39-50. Keywords: colony; cyanobacteria; Microcystis; morphology; phycoerythrin; pigment Strain(s): 843,  901  PubMed: 12483602 DOI: 10.2323/jgam.46.39 Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 1998 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin. FEMS Mircobiol. Lett., 164, 119-124. Keywords: cyanobacterium; Microcystis; 16S rDNA; taxonomy Strain(s): 1054,  1055,  1067,  1072,  1085,  1090,  1143  DOI: 10.1111/j.1574-6968.1998.tb13076.x Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 1999 Phylogenetic relationships between toxic and non-toxic strains of the genus Microcystis based on 16S to 23S internal transcribed spacer sequence. FEMS Mircobiol. Lett., 172, 15-21. Keywords: cyanobacteria; Microcystis; internal transcribed spacer; phylogeny; microcystin Strain(s): 44,  104,  111,  1054,  1055,  1058,  1067,  1068,  1072,  1085,  1086,  1090,  1091,  1092,  1105,  1115,  1117,  1143  PubMed: 10079523 DOI: 10.1111/j.1574-6968.1999.tb13443.x Otsuka, S., Suda, S., Shibata, S., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 2001 A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the rules of the Bacteriological Code. Int. J. Syst. Evol. Microbiol., 51, 873-879. Keywords: cyanobacteria; DNA-DNA hybridization; Microcystis; taxonomy; unification Strain(s): 843  PubMed: 11411709 DOI: 10.1099/00207713-51-3-873 Otsuki, A., Watanabe, M. M., Sugahara, K. 1987 Chlorophyll pigments in methanol extracts from ten axenic cultured diatoms and three green algae as determined by reverse phase HPLC with fluorometric detection. J. Phycol., 23, 406-414. Keywords: chlorophyll c complex; chlorophyll pigments; diatoms; field desorption mass spectrometry; methanol extracts; reverse phase HPLC Strain(s): 16,  56,  71,  157,  225,  534  DOI: 10.1111/j.1529-8817.1987.tb02526.x Oudot-Le Secq, M. P., Green, B. R. 2011 Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene, 476, 20-26. Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements Strain(s): 4392  PubMed: 21320580 DOI: 10.1016/j.gene.2011.02.001 Oudot-Le Secq, M. P., Grimwood, J., Shapiro, H., Armbrust, E. V., Bowler, C., Green, B. 2007 Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics, 277, 427–439. Keywords: Chloroplast; Plastid; Genome; Secondary endosymbiosis; Diatom Strain(s): 4392  PubMed: 17252281 DOI: 10.1007/s00438-006-0199-4 Oyama, Y., Matsushita, B., Fukushima, T., Chen, J., Nagai, T., Imai, A. 2010 Testing the spectral decomposition algorithm (SDA) for different phytoplankton species by a simulation based on tank experiments. Int. J. Remote Sens., 31, 1605-1623. Strain(s): 44,  75,  204,  803  DOI: 10.1080/01431160903475365 Ozaki, K., Ito, E., Tanabe, S., Natsume, K., Tsuji, K., Harada, K. 2009 Electron microscopic study on lysis of a cyanobacterium Microcystis. J. Health Sci., 55, 578-585. Keywords: cyanobacteria; scanning electron microscope; transmission electron microscope; morphological change; b-cyclocitral; L-lysine Strain(s): 102,  298  DOI: 10.1248/jhs.55.578 Ozaki, K., Ohta, A., Iwata, C., Horikawa, A., Tsuji, K., Ito, E., Ikai, Y., Harada, K-I. 2008 Lysis of cyanobacteria with volatile organic compounds. Chemosphere, 71, 1531-1538. Keywords: Cyanobacteria; Lysis; Microorganism; Volatile compound; b-Cyclocitral Strain(s): 73,  102,  103,  112,  298  PubMed: 18179811 DOI: 10.1016/j.chemosphere.2007.11.052 Pan, H., Song, L., Liu, Y., Börner, T. 2002 Detection of hepatotoxic Microcystis strains by PCR with intact cells from both culture and environmental samples. Arch. Microbiol., 178, 421-427. Keywords: Cyanobacteria; Microcystis; Microcystin; Toxin; Peptide synthetase; Whole-cell PCR Strain(s): 42,  90,  98,  101,  595,  610  PubMed: 12420161 DOI: 10.1007/s00203-002-0464-9 Pancrace, C., Ishida, K., Briand, E., Pichi, D. G., Weiz, A. R., Guljamow, A., Scalvenzi, T., Sassoon, N., Hertweck, C., Dittmann, E., Gugger, M. 2019 Unique biosynthetic pathway in bloom-forming Cyanobacterial genus Microcystis jointly assembles cytotoxic aeruginoguanidines and microguanidines. ACS Chem. Biol., 14, 67-75. Strain(s): 98,  843  PubMed: 30556994 DOI: 10.1021/acschembio.8b00918 Pang, X., Nawrocki, W. J., Cardol, P., Zheng, M., Jiang, J., Fang, Y., Yang, W., Croce, R., Tian, L. 2023 Weak acids produced during anaerobic respiration suppress both photosynthesis and aerobic respiration. Nat. Commun., 14, 4207 (article ID). Strain(s): 2499  PubMed: 37452043 DOI: 10.1038/s41467-023-39898-0 Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M. 2016 A unique tryptophan c-prenyltransferase from the kawaguchipeptin biosynthetic pathway. Angew. Chem.-Int. Edit., 7, 3596-3599. Strain(s): 88  PubMed: 26846478 DOI: 10.1002/anie.201509920 Park, B. S., Baek, S. H., Ki, J.-S., Cattolico, R. A., Han, M.-S. 2012 Assessment of EvaGreen-based quantitative real-time PCR assay for enumeration of the microalgae Heterosigma and Chattonella (Raphidophyceae). J. Appl. Phycol., 24, 1555-1567. Keywords: Raphidophyceae; Quantitative real-time PCR; EvaGreen; Field application Strain(s): 293  DOI: 10.1007/s10811-012-9816-2 Park, B. S., Kim, S., Kim. J.-H., Kim, J. H., Han, M.-S. 2019 Dynamics of Amoebophrya parasites during recurrent blooms of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters. Harmful Algae, 84, 119-126. Keywords: Amoebophrya; Bloom dynamics; Cochlodinium polykrikoides ; Parasitism; Uantitative real-time PCR Strain(s): 298  PubMed: 31128796 DOI: 10.1016/j.hal.2019.02.001 Park, B. S., Park, C.-S., Shin, Y., Yoon, S., Han, M.-S., Kang, Y.-H. 2022 Different algicidal modes of the two bacteria Aeromonas bestiarum HYD0802-MK36 and Pseudomonas syringae KACC10292T against harmful cyanobacteria Microcystis aeruginosa. Toxins, 14, 128 (article ID). Keywords: Microcystis aeruginosa; algicidal bacteria; Aeromonas bestiarum; Pseudomonas syringe; algicidal modes Strain(s): 94,  298  PubMed: 35202155 DOI: 10.3390/toxins14020128 Park, H-D. & Hayashi, H. 1994 Microcystis and microcystins [Microcystis zoku to mikuroshisuchin]. In Waterbloom of Blue-green Algae and Their Toxins [Aoko, sono shutsugen to dokuso], Eds. by Watanabe, M. F., Harada,K. & Fujii, H., University of Tokyo Press, pp. 75-99 (in Japanese). Strain(s): 73,  74,  1053,  1054,  1055,  1059,  1061,  1063,  1064,  1066,  1067,  1068,  1070,  1071,  1072,  1074,  1076,  1077,  1079,  1080,  1081,  1083,  1084,  1085,  1086,  1090,  1091,  1093,  1095,  1097,  1098,  1099,  1140,  1154,  3349  Park, H-D. & Watanabe, M. F. 1996 Toxic Microcystis in eutrophic lakes. In Toxic Microcystis, Eds. by Watanabe, M.F., Harada, K., Carmichael W.W. & Fujii, H., CRC Press, Boca Raton, pp. 57-77. Strain(s): 73,  74,  1063,  1074,  1079,  1085,  1086,  1090,  1154,  3349  Park, H-D., Watanabe, M. F., Harada, K., Nagai, H., Suzuki, M., Watanabe, M., Hayashi, H. 1993 Hepatotoxin (microcystin) and neurotoxin (anatoxin-a) contained in natural blooms and strains of cyanobacteria from Japanese freshwaters. Natural Toxins, 1, 353-360. Keywords: Anabaena; anatoxin-a; neurotoxin; Microcystis; microcystin; hepatotoxin; natural bloom; strain; Japanese freshwaters; simultaneous analysis of anatoxin-a and microcystin Strain(s): 73,  74,  1063,  1074,  1079,  1085,  1086,  1090,  3349  DOI: 10.1002/nt.2620010606 Park, J-W., Kim, S. H., Ito, T.,Fujii, T., Kim, S. Y., Laurell, T., Lee, S. W., Goda, K. 2016 Acoustofluidic harvesting of microalgae on a single chip. Biomicrofluidics, 10, 034119 (article ID). Strain(s): 48  PubMed: 27462380 DOI: 10.1063/1.4954744 Park, M.-H., Kim, B.-H., Chung, I. M., Hwang, S.-J. 2009 Selective bactericidal potential of rice (Oryza sativa L. var. japonica) full extract on Microcystis strain in comparison with green algae and zooplankton. Bull. Environ. Contam. Toxicol., 83, 97-101. Keywords: Rice hull extract; Selective control; Microcystis aeruginosa; Green alga; Zooplankton Strain(s): 298  PubMed: 19434356 DOI: 10.1007/s00128-009-9732-6 Park, S. A., Jeong, H., J., Ok, J. H., Kang, H. C., You, J. H., Eom, S. H., Yoo, Y. D., Lee, M. J. 2021 Bioluminescence capability and intensity in the dinoflagellate Alexandrium species. Algae, 36, 299-314. Keywords: harmful algal bloom; luciferase gene; luminescence; protist; red tide Strain(s): 3611,  4274  DOI: 10.4490/algae.2021.36.12.6 Park, S. I., Cho, C. H., Ciniglia, C., Huang, T.-Y., Liu, S.-L., Bustamante, D. E., Calderon, M. S., Mansilla, A., McDermott, T., Andersen, R. A., Yoon, H. S. 2023 Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta). J. Phycol., 59, 444-466. Keywords: “cave Cyanidium”; Cyanidiales; organelle genome; phylogeny; Rhodophyta; taxonomy Strain(s): 3638  PubMed: 36792488 DOI: 10.1111/jpy.13322 Park, S., Lee, S., Kim, H. S., Choi, H. J., Jeong, O. C., Lin, R., Cho, Y., Lee, M.-H. 2022 Square microchannel enables to focus and orient ellipsoidal Euglena gracilis cells by two-dimensional acoustic standing wave. Microchim. Acta, 189, 331 (article ID). Keywords: Acoustofluidics; Microalgae; Acoustic focusing; Microfluidics; Flow cytometry Strain(s): 48  PubMed: 35969307 DOI: 10.1007/s00604-022-05439-7 Partensky, F., Hoepffner, N., Li, W. K. W., Ulloa, O., Vaulot, D. 1993 Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains isolated from the North Atlantic and the Mediterranean Sea. Plant Physiol., 101, 285-296. Strain(s): 2880,  2881  PubMed: 12231684 DOI: 10.1104/pp.101.1.285 Partensky, F., Six, C., Ratin, M., Garczarek, L., Vaulot, D., Probert, I., Calteau, A., Gourvil, P., Marie, D., Grébert, T., Bouchier, C., Le Panse, S., Gachenot, M., Rodríguez, F., Garrido, J. L. 2018 A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle. Sci Rep, 8, 9142 (article ID). Strain(s): 3840  PubMed: 29904088 DOI: 10.1038/s41598-018-27542-7 Pascual, G., Sano, D., Sakamaki, T., Nishimura, O. 2020 Effects of chemical interaction of nutrients and EDTA on metals toxicity to Pseudokirckneriella subcapitata. Ecotox. Environ. Safe., 203, 110966 (article ID). Keywords: Metal toxicity; Nutrient metal; Non-nutrient metal; EDTA; Metal speciation Strain(s): 35  PubMed: 32678755 DOI: 10.1016/j.ecoenv.2020.110966 Patel, A. K., Singhania, R. R., Sim, S. J., Dong, C. D. 2021 Recent advancements in mixotrophic bioprocessing for production of high value microalgal products. Bioresour. Technol., 320, 124421 (article ID). Keywords: Microalgae; Mixotrophic; MCS; Organic carbon; Photosynthesis; Bioproducts Strain(s): 144  PubMed: 33246239 DOI: 10.1016/j.biortech.2020.124421 Patel, A., Chaudhary, S., Alam Syed, B., Gami, B., Patel, P. 2018 Rbcl marker based approach for molecular identification of Arthrospira and Dunaliella isolates from non-axenic cultures. J. Genet. Genetic Engine, 2, 24-34. Keywords: Arthrospira; Dunaliella; Microalgae; Molecular identification; non-axenic culture; rbcL gene marker Strain(s): 637  Pedersén, M. & DaSilva, E. J. 1973 Simple brominated phenols in the bluegreen alga Calothrix brevissima West. Planta, 115, 83-86. Strain(s): 22  PubMed: 24458820 DOI: 10.1007/BF00388608 Pelusi, A., Hanawa, Y., Araie, H., Suzuki, I., Giordan, M., Shiraiwa, Y. 2016 Rapid detection and quantification of haptophyte alkenones by Fourier transform infrared spectroscopy (FTIR). Algal Res., 19, 48-56. Keywords: Alkenones; Alkenone-producing haptophyte; Emiliania huxleyi; FTIR; Lipid;trans-Carbon-carbon double bond Strain(s): 837  DOI: 10.1016/j.algal.2016.07.006 Peng, G., Martin, R.M., Dearth, S.P., Sun, X., Boyer, G.L., Campagna, S.R., Lin, S., Wilhelm, S.W. 2018 Seasonally relevant cool temperatures interact with N chemistry to increase microcystins produced in lab cultures of Microcystis aeruginosa NIES-843. Environ. Sci. Technol., 52, 4127-4136. Strain(s): 843  PubMed: 29522323 DOI: 10.1021/acs.est.7b06532 Peng, H., Wei, D., Chen, G., Chen, F. 2016 Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169. Biotechnol. Biofuels, 9, 151 (article ID). Keywords: Coccomyxa subellipsoidea C-169; Elevated CO2; Lipid accumulation; Transcriptomic analysis; Phosphoenolpyruvate carboxylase; Pyruvate carboxylase; Carbamoyl-phosphate synthetase II; Ferredoxin; Vacuolar; H+-ATPase Strain(s): 2166  PubMed: 27453726 DOI: 10.1186/s13068-016-0571-5 Pengfei, J., Wang, H., Huang, W., Liu, W., Fan, Y., Miao, W. 2018 The allelopathic effect and safety evaluation of 3,4-Dihydroxybenzalacetone on Microcystis aeruginosa. Pest. Biochem. Physiol., 147, 145-152. Keywords: Antibacterial; DBL; Phenolic acids; Microcystis aeruginosa; Environmental friendly Strain(s): 843  PubMed: 29933985 DOI: 10.1016/j.pestbp.2017.08.011 Petersen, J., Ludewig, A. K., Michael, V., Bunk, B., Jarek, M., Baurain, D., Brinkmann, H. 2014 Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol. Evol., 6, 666-684. Keywords: next-generation sequencing; eukaryote-to-eukaryote endosymbioses; horizontal and endosymbiotic gene transfer; chromalveolate hypothesis; long-branch attraction artifacts Strain(s): 4391  PubMed: 24572015 DOI: 10.1093/gbe/evu043 Pfaff, S., Borchhardt, N., Boy, J., Karsten, Ulf., Gustavs, L. 2016 Desiccation tolerance and growth-temperature requirements of Coccomyxa (Trebouxiophyceae, Chlorophyta) strains from Antarctic biological soil crusts. Algol. Stud., 151/152, 3-19. Keywords: Antarctica; biological soil crusts; ecophysiology; desiccation; cold adaptation; endemis Strain(s): 2166  DOI: 10.1127/algol_stud/2016/0245 Pham, T., Shimizu, K., Dao, T., Hong-Do, L., Utsumi, M. 2015 Microcystin uptake and biochemical responses in the freshwater clam Corbicula leana P. exposed to toxic and non-toxic Microcystis aeruginosa: Evidence of tolerance to cyanotoxins. Toxicology Report, 2, 88-98. Keywords: Bioaccumulation; Biochemical response; Corbicula leana; Microcystins; Toxic and non-toxic Strain(s): 101,  1086,  2170  DOI: 10.1016/j.toxrep.2015.01.012 Pham, T.-L., Bui, M. H., Driscoll, M., Shimizu, K., Motoo, U. 2020 First report of geosmin and 2-methylisoborneol (2-MIB) in Dolichospermum and Oscillatoria from Vietnam. Limnology, 22, 43–56. Keywords: Off-flavour compounds; Taste and odour; Tropical water; Cyanobacteria Strain(s): 19,  33,  81,  814,  1648,  1879  DOI: 10.1007/s10201-020-00630-2 Pham, T.-L., Tran, T. H. Y., Hoang, N. S., Ngo, X. Q., Tran, T. T. 2020 Co-occurrence of microcystin-and geosminproducing cyanobacteria in the Tri An Reservoir, a drinking-water supply in Vietnam. Fundam. Appl. Limnol., 193, 299-311. Keywords: taste and odor; off-flavor compound; earthy/muddy smell; cyanotoxin Strain(s): 102  DOI: 10.1127/fal/2020/1296 Pham, T.-L., Tran, T. H. Y., Shimizu, K., Li, Q., Utsumi, M. 2021 Toxic cyanobacteria and microcystin dynamics in a tropical reservoir: assessing the influence of environmental variables. Environ. Sci. Pollut. Res., 28, 63544–63557. Keywords: Harmful algae bloom; Cyanotoxins; Real-time PCR; Sediment Strain(s): 101,  102  PubMed: 32948940 DOI: 10.1007/s11356-020-10826-9 Phan, C.-S., Matsuda, K., Balloo, N., Fujita, K., Wakimoto, T., Okino, T. 2021 Argicyclamides A–C Unveil Enzymatic Basis for Guanidine Bis-prenylation J. Am. Chem. Soc., 143, 10083–10087. Strain(s): 88  PubMed: 34181406 DOI: 10.1021/jacs.1c05732 Phua, Y. H., Husnik, F., Lemer, S., Wakeman, K. C. 2022 Phylogeny of Amphidinium (Dinophyceae) from Guam and Okinawa, with descriptions of A. pagoense sp. nov. and A. uduigamense sp. nov. Phycologia, 61, 241-254. Keywords: Biodiversity; Epiphytic dinoflagellates; Microalgae; Molecular phylogeny; Taxonomy Strain(s): 4545,  4605,  4606,  4607,  4608  DOI: 10.1080/00318884.2022.2033948 Phua, Y. H., Roy, M. C., Lemer ,S., Husnik, F., Wakeman, K. C. 2021 Diversity and toxicity of Pacific strains of the benthic dinoflagellate Coolia (Dinophyceae), with a look at the Coolia canariensis species complex. Harmful Algae, 109, 102120 (article ID). Keywords: Cooliatoxin; Cryptic species; Harmful algal bloom; High-resolution MS; Phylogeny; Taxonomy Strain(s): 3637  PubMed: 34815025 DOI: 10.1016/j.hal.2021.102120 Pietramellara, G. 2023 Mechanisms involved in exopolymers (exopolysaccharides and exoproteins) secretion in biocrust and biofilm forming cyanobacteria as a response to dehydration. PhD thesis, Università degli Studi di Firenze, Italy, 135 pp. Strain(s): 1956,  2121  Pilátová, J., Pánek, T., Oborník, M., Čepička, I., Mojzeš, P. 2022 Revisiting biocrystallization: purine crystalline inclusions are widespread in eukaryotes. ISME J., 16, 2290-2294. Strain(s): 67,  303,  995,  1604,  2146,  2285,  2860  PubMed: 35672454 DOI: 10.1038/s41396-022-01264-1 Piligaeva, A.V., Sorokinaab, K.N., Shashkovab, M.V., Parmon, V.N. 2018 Screening and comparative metabolic profiling of high lipid content microalgae strains for application in wastewater treatment. Bioresour. Technol., 250, 538-547. Keywords: Microalgae; Wastewater; Metabolic profiling; Lipid metabolism Strain(s): 2164,  2280  PubMed: 29197777 DOI: 10.1016/j.biortech.2017.11.063 Pisapia, F., Holland, W. C., Hardison, D. R., e Litake, R. W., Fraga, S., Nishimura, T., Adachi, M., Nguyen-Ngoc, L., Séchet, V., Amzil, Z., Herrenknecht, C., Hess, P. 2017 Toxicity screening of 13 Gambierdiscus strains using neuro-2a and erythrocyte lysis bioassays. Harmful Algae, 63, 173-183. Keywords: Ciguatera fish poisoning; Gambierdiscus; Ciguatoxins; Maitotoxins; Neuro-2a assay; Erythrocyte lysis assay Strain(s): 4118  PubMed: 28366392 DOI: 10.1016/j.hal.2017.02.005 Pisapia, F., Sibat, .M., Herrenknecht, C., Lhaut, K., Gaiani, G., Ferron, P., Fessard, V., Fraga, S., Nascimento, S. M., Litaker, R. W., Holland, W. C., Roullier, C., Hess, P. 2017 Maitotoxin-4, a novel MTX analog produced by Gambierdiscus excentricus. Mar. Drugs, 15, 220 (article ID). Keywords: Gambierdiscus excentricus; maitotoxin-4; bioguided fractionation; size-exclusion chromatography (LH-20); neuro-2a (N2a) assay; LC-HRMS/MS (Q-Tof 6550); LC-LRMS/MS (API4000 QTrap) Strain(s): 4118,  4119  PubMed: 28696398 DOI: 10.3390/md15070220 Pjon, C.-J. & Fujita, Y. 1973 Immunological identification of pigment component of a photochemically active chromoprotein (ACP) isolated from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 14, 201-205. Strain(s): 19  Pjon, C.-J. & Fujita, Y. 1974 The separation and characterization of the photoreactive component of a photochemically active chromoprotein (ACP) obtained from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 15, 789-797. Strain(s): 19  Pjon, C.-J., Suzuki, R., Fujita, Y. 1972 Photochemical activity fluorescence and absorption spectrum of the photochemically active chromoprotein (ACP) isolated from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 13, 437-447. Strain(s): 19  Poli, M., Ruiz-Olvera, P., Nalca, A., Ruiz, S., Livingston, V., Frick, O., Dyer, D., Schellhase C., Raymond, J., Kulis, D., Anderson, D., McGrath, S., Deeds, J. 2018 Toxicity and pathophysiology of palytoxin congeners after intraperitoneal and aerosol administration in rats. Toxicon, 150, 235-250. Keywords: Palytoxin congeners; Intraperitoneal administration; Aerosol administration; Lethality; Tissue histopathology; Rats Strain(s): 3351  PubMed: 29902540 DOI: 10.1016/j.toxicon.2018.06.067 Pollner, E., Farré, E. M., Bennlng, C. 2018 Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp. Plant Cell Reports, 37, 1383-1399. Keywords: Nannochloropsis; Algal biotechnology; Marker-free engineering; Gene stacking; Synthetic biology; Episomes Strain(s): 2145,  2146  PubMed: 29511798 DOI: 10.1007/s00299-018-2270-0 Pombert, J. F., Beauchamp, P., Otis, C., Lemieux, C., Turmel, M. 2006a The complete mitochondrial DNA sequence of the green alga Oltmannsiellopsis viridis: evolutionary trends of the mitochondrial genome in the Ulvophyceae. Curr. Genet., 50, 137-147. Keywords: green algae; mitochondrial genome evolution; horizontal DNA transfers; introns; repeated sequences Strain(s): 360  PubMed: 16721603 DOI: 10.1007/s00294-006-0076-z Pombert, J.-F., Lemieux, C., Turmel, M 2006b The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes. BMC Biol., 4, 3 (article ID). Strain(s): 360  PubMed: 16472375 DOI: 10.1186/1741-7007-4-3 Poonkum, W., Powtongsook, S., Pavasant, P. 2015 Astaxanthin induction in microalga H. pluvialis with flat panel airlift photobioreactors under indoor and outdoor conditions. Prep. Biochem. Biotechnol., 45, 1-17. Keywords: carotenoid; Haematococcus pluvialis; mature cyst; microalgae; pigment; scale-up Strain(s): 144  PubMed: 25105532 DOI: 10.1080/10826068.2013.867871 Popin, R. V., Delbaje, E., Abreu, V.A.C., Rigonato, J., Dörr, F.A., Pinto, E., Sivonen, K., Fiore, M.F. 2020 Genomic and metabolomic analyses of natural products in Nodularia spumigena isolated from a shrimp culture pond. Toxins, 12, 141 (article ID). Keywords: cyanobacteria; gene cluster; mass spectrometry; cyanotoxins; terpenes; water quality Strain(s): 3585  PubMed: 32106513 DOI: 10.3390/toxins12030141 Pound, H. L. & Wilhelm, S. W. 2020 Tracing the active genetic diversity of Microcystis and Microcystis phage through a temporal survey of Taihu. PLoS One, 15, e0244482 (article ID). Strain(s): 88,  843  PubMed: 33370358 DOI: 10.1371/journal.pone.0244482 Pozzer, A. C.,Gómez, P. A., Weiss, J. 2022 Volatile organic compounds in aquatic ecosystems - Detection, origin, significance and applications. Sci. Total Environ., , 156155 (article ID). Keywords: VOCs; Aquatic microorganisms; Marine and freshwater environments; Ecological impacts; Infochemicals; Bioindicators Strain(s): 843  PubMed: 35609693 DOI: 10.1016/j.scitotenv.2022.156155 Pratte, B. S. & Thiel, T. 2021 Comparative genomic insights into culturable symbiotic cyanobacteria from the water fern Azolla. Microb. Genomics, 7, 000595 (article ID). Strain(s): 25,  3275  PubMed: 34181515 DOI: 10.1099/mgen.0.000595 Praveenkumar, R., Lee, J., Vijaya, D., Lee, S. Y., Lee, K., Sim, S. J., Hong, M. E., Kim, Y.-E., Oh, Y.-K. 2020 Morphological change and cell disruption of Haematococcus pluvialis cyst during high-pressure homogenization for astaxanthin recovery. Appl. Sci., 10, 513 (article ID). Keywords: Haematococcus pluvialis; high-pressure homogenization; astaxanthin; cyst; cell disruption Strain(s): 144  DOI: 10.3390/app10020513 Přibyl, P. & MProcházková, L. 2023 Trebonskia zoosporica, gen. et sp. nov., a new member of the Goniochloridales (Eustigmatophyceae, Stramenopiles) with an unusual mode of reproduction. Eur. J. Phycol., 58, 199-213. Keywords: 18S rRNA; Eustigmatophyceae; fatty acids; Goniochloridales; rbcL; Trebonskia zoosporica; zoospores Strain(s): 2860  DOI: 10.1080/09670262.2022.2089913 Price, D. C., Steiner, J. M., Yoon, H. S., Bhattacharya, D., Löffelhardt, W. 2017 Glaucophyta In Handbook of the protists, 2nd ed. , Eds. by Archibald, J. M., Simpson, A. G. B., Slamovits, C. H., Springer, pp. 1-65. Keywords: Archaeplastida; Cyanophora paradoxa; Muroplasts; Single primary endosymbiotic event; Phylogenomics; Carbon-concentrating mechanism; Eukaryotic peptidoglycan; Phycobilisomes Strain(s): 547,  763,  764,  966,  1369,  1961,  2141,  3645  DOI: 10.1007/978-3-319-32669-6_42-1 Procházková, L., Matsuzaki, R., Řezanka, T., Nedbalová, L., Remias, D. 2023 The snow alga Chloromonas kaweckae sp. nov. (Volvocales, Chlorophyta) causes green surface blooms in the High Tatras (Slovakia) and tolerates high irradiance. J. Phycol., 59, 236-248. Keywords: biodiversity; cryoflora; environmental sample; fatty acids; fluorometry; vegetative stages Strain(s): 2379,  3753,  4284,  4476  PubMed: 36461636 DOI: 10.1111/jpy.13307 Pröschold, T. & Darienko, T. 2020 Choricystis and Lewiniosphaera gen. nov. (Trebouxiophyceae Chlorophyta), two different green algal endosymbionts in freshwater sponges. Symbiosis, 82, 175-188. Keywords: Choricystis; Lewiniosphaera; Freshwater sponges; Endosymbiosis Strain(s): 2167,  2171,  2342,  4033,  4292  PubMed: 33328698 DOI: 10.1007/s13199-020-00711-x Pröschold, T., Darienko, T. 2018 The distinctions between Chlamydomonas incerta Pascher and Chlamydomonas globosa J.W. Snow and their taxonomic consequences. Notulae Algarum, 56 1-4. Strain(s): 2462  Pröschold, T., Darienko, T., Krienitz, L., Coleman, A. W. 2018 Chlamydomonas schloesseri sp. nov. (Chlamydophyceae, Chlorophyta) revealed by morphology, autolysin cross experiments, and multiple gene analyses. Phytotaxa, 362, 21-38. Keywords: integrative taxonomy; Chlamydomonas; intraspecific variation; species concept; DNA barcoding Strain(s): 2462  DOI: 10.11646/phytotaxa.362.1.2 Pröschold, T., Harris, E. H., Coleman, A. W. 2005 Portrait of a species: Chlamydomonas reinhardtii. Genetics, 170, 1601-1610. Keywords: Chlamydomonas; Internal Transcribed Spacer; phylogenetics; population genetics; ribosomal cistrons Strain(s): 2237,  2238  PubMed: 15956662 DOI: 10.1534/genetics.105.044503 Pröschold, T., Pitsch, G., Darienko, T. 2020 Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a new endosymbiont isolated from ciliates. Diversity-Basel, 12, 200 (article ID). Keywords: Micractinium tetrahymenae; Tetrahymena; Utricularia; facultative endosymbiosis; ciliate-algae symbiosis Strain(s): 2167,  2171,  4033  DOI: 10.3390/d12050200 Purba, L. D. A., Othman, A., Yuzir, A., Mohamad, S. V., Iwamoto, K., Abdullah, N., Shimizu, K., Hermana, J. 2022 Enhanced cultivation and lipid production of isolated microalgae strains using municipal wastewater. Environ. Technol. Innov., 27, 102444 (article ID). Keywords: Microalgae; Municipal wastewater; Nutrient removal; Lipid production Strain(s): 1269  DOI: 10.1016/j.eti.2022.102444 Qian, J., Liu, X, Ban, S, Fujiwara, M, Kodera, T, Akizuki, S, Toda, T. 2020 pH treatments in continuous cultivation to maximize microalgal production and nutrient removal from anaerobic digestion effluent of aquatic macrophytes. J. Appl. Phycol., 32, 3349–3362. Keywords: Biomass recovery; Flow-through cultivation; Nutrient removal; pH control; Mg availability; Bio-digester effluent Strain(s): 2173  DOI: 10.1007/s10811-020-02196-z Qian, J., Shimotori, K., Liu, X., Ban, S., Akizuki, S., Fujiwara, M., Kodera, T., Toda, T., Imai, A. 2021 Enhancement of algal growth by Mg2+ released from anaerobic digestion effluent of aquatic macrophytes through photolysis. Biochem. Eng. J., 172, 108065 (article ID). Keywords: Ultraviolet photolysis; DOM degradation; DOM molecular size distribution; Mg availability; Bio-digester effluent Strain(s): 2173  DOI: 10.1016/j.bej.2021.108065 Qin, L., Liu, L., Wang, Z., Chen, W., Wei, D. 2018 Efficient resource recycling from liquid digestate by microalgae-yeast mixed culture and the assessment of key gene transcription related to nitrogen assimilation in microalgae. Bioresour. Technol., 264, 90-97. Keywords: Chlorella vulgaris; Digestate; Mixed culture; Yarrowia lipolytica Strain(s): 227  PubMed: 29793118 DOI: 10.1016/j.biortech.2018.05.061 Qin, L., Wei, D., Wang, Z., Alam, M. A. 2019 Advantage assessment of mixed culture of Chlorella vulgaris and Yarrowia lipolytica for treatment of liquid digestate of yeast industry and cogeneration of biofuel feedstock. Appl. Biochem. Biotechnol., 187, 856–869. 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Y, Sarian, F. D., van WijkM, A., Martinez-Garcia, M., van der Maarel, M. J. E. C. 2017 Thermostable phycocyanin from the red microalga Cyanidioschyzon merolae, a new natural blue food colorant. J. Appl. Phycol., 29, 1233–1239. Keywords: Food colorant; Phycocyanin; Pigments; Red microalga; Cyanidioschyzon merolae Strain(s): 1332  PubMed: 28572707 DOI: 10.1007/s10811-016-1007-0 Rahman, M. M., Rahaman, M. S., Islam, M. R., Hossain, M. E., Mithi, FM., Ahmed, M., Saldías, M., Akkol, E. K., Sobarzo-Sánchez, E. 2021 Multifunctional therapeutic potential of phytocomplexes and natural extracts for antimicrobial properties. Antibiotics-Basel, 10, 1076 (article ID). 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Keywords: Microalgae production; Nannochloropsis; Open raceway pond; Sequential batch culture Strain(s): 2145  PubMed: 32860094 DOI: 10.1007/s10126-020-09990-3 Sakaguchi, M., Hausmann, K., Suzaki, T. 1998 Food capture and adhesion by the heliozoon Actinophrys sol. Protoplasma, 203, 130-137. Keywords: Actinophrys sol; Exocytosis; Extrusomes; Feeding behavior; Heliozoa; Prey adhesion Strain(s): 2497  DOI: 10.1007/BF01279469 Sakaguchi, M., Murakami, H., Suzaki, T. 2001 Involvement of a 40-kDa glycoprotein in food recognition, prey capture, and induction of phagocytosis in the protozoon Actinophrys sol. Protist, 152, 33-41. Strain(s): 2497,  3374  PubMed: 11401035 DOI: 10.1078/1434-4610-00041 Sakaguchi, M., Suzaki, T., Shigenaka, Y. 1997 Statistical analysis of spatial patterns of the heliozoan Actinophrys sol. Protoplasma, 196, 117-122. Keywords: Heliozoa; Spatial point pattern; Cell distribution; Interaction potential; Likelihood analysis Strain(s): 2497  DOI: 10.1007/BF01281065 Sakaguchi, M., Suzuki, T. 1999 Monoxenic culture of the heliozoon Actinophrys sol. Eur. J. Protistol., 35, 1-10. Keywords: Actinophrys sol; Antibiotic; Heliozoa; Monoxenic Culture Strain(s): 2497,  3374  DOI: 10.1016/S0932-4739(99)80050-9 Sakaguchi, M., Suzuki, T., Khan, S. M. M. K. Hausmann, K. 2002 Food capture by kinetocysts in the heliozoon Raphidiophrys contractilis. Eur. J. Protistol., 37, 453-458. Keywords: Exocytosis; Extrusome; Heliozoa; Kinetocyst Strain(s): 2498,  3374  DOI: 10.1078/0932-4739-00847 Sakaguchi, T., Horikoshi, T., Nakajima, A. 1978 Uptake of uranium from seawater by microalgae. J. Ferm. Technol., 56, 561-565. Strain(s): 2138,  2139,  2212,  2238,  2279  Sakaguchi, T., Tsuji, T., Nakajima, A., Horikoshi, T. 1979 Accumulation of cadmium by green microalgae. Eur. J. Appl. Microbiol. Biotechnol., 8, 207-215. Strain(s): 2212,  2273,  2274,  2279  DOI: 10.1007/BF00506184 Sakai, H., Katayama, H., Oguma, K., Ohgaki, S. 2011 Effect of photoreactivation on ultraviolet inactivation of Microcystis aeruginos. Water Sci. Technol., 63, 1224-1229. Keywords: Microcystis aeruginosa; photoreactivation; UV treatment Strain(s): 98  PubMed: 21436560 DOI: 10.2166/wst.2011.362 Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Growth inhibition of Anabaena variabilis by low- or medium-pressure UV lamp irradiation. Environ. Eng. Res., 42, 495-501 (in Japanese with English summary). Keywords: growth inhibition; Anabaena variabilis; UV irradiation; model calculation Strain(s): 23  Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Low- or medium-pressure UV lamp inactivation of Microcystis aeruginosa. J. Water Environ. Technol., 3, 55-61. Keywords: Microcystis aeruginosa; low-pressure (LP) UV lamp; medium-pressure (MP) UV lamp; endonuclease sensitive site (ESS) assay; photoreactivation Strain(s): 98  Sakai, H., Oguma, K., Katayama, H., Ohgaki, S. 2007 Effects of low- or medium-pressure ultraviolet lamp irradiation on Microcystis aeruginosa and Anabaena variabilis. Water Res., 41, 11-18. Keywords: Microcystis aeruginosa; Anabaena variabilis; Low-pressure ultraviolet lamp; Medium-pressure ultraviolet lamp; DNA damage; Photosynthetic activity Strain(s): 23,  98  PubMed: 17097715 DOI: 10.1016/j.watres.2006.09.025 Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017 Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan. Fish. Sci., 83, 113-121. Keywords: Algicidal bacteria; Real-time polymerase; chain reaction; Zostera marina; Harmful algal bloom; Most probable number Strain(s): 1  DOI: 10.1007/s12562-016-1048-y Sakamori, S., Uraya, K., Annen, K. 2001 Eutrophication of the sea area (III). Bull. Toyama Pref. Environ. Sci. Res. Center, 29, 34-42 (in Japanese with English summary). Strain(s): 561  Sakamori, S., Yoshikawa, H., Annen, K. 2000 The research on the eutrophication of the sea area (II). Bull. Toyama Pref. Environ. Sci. Res. Center, 28, 31-41 (in Japanese with English summary). Strain(s): 561  Sakamoto, B., Hokama, Y., Horgen, FD., Scheuer, PJ., Kan, Y., Nagai, H. 2000 Isolation of a sulfoquinovosyl monoacylglycerol from Bryopsis sp. (Chlorophyta): identification of a factor causing a possible species-specific ecdysis response in Gambierdiscus toxicus (Dinophyceae). J. Phycol., 36, 924-931. Keywords: Bryopsis sp.; Ecdysis; Gambierdiscus toxicus; 1-O-palmitoyl-3-O-(6'-sulfo-a-d-quinovopyrano-syl)-sn-glycerol; Sulfoquinovosyl monoacylglycerols Strain(s): 615,  617  DOI: 10.1046/j.1529-8817.2000.00006.x Sakamoto, S., Yamaguchi, M., Watanabe, M. F., Watanabe, M., Kamiya, H. 1996 Distribution and characterization of lectins from natural and cultured Microcystis spp. In Harmful and Toxic Algal Blooms, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., Intergovernmental Oceanographic Commission of UNESCO 1996, pp. 569-572. Strain(s): 100,  102,  106,  298,  1057,  1061,  1066,  1080  Sakamoto, T., Hashimoto, A., Yamaba, M., Wada, N., Yoshida, T., Inoue-Sakamoto, K., Nishiuchi, T., Matsugo, S. 2019 Four chemotypes of the terrestrial cyanobacterium Nostoc commune characterized by differences in the mycosporine‐like amino acids. Phycol. Res., 67, 3-11. Strain(s): 2538,  3989,  3990  DOI: 10.1111/pre.12333 Sakamoto, T., Kumihashi, K., Kunita, S., Masaura, T., Inoue-Sakamoto, K., Yamaguchi, M. 2011 The extracellular-matrix-retaining cyanobacterium Nostoc verrucosum accumulates trehalose, but is sensitive to desiccation. FEMS Microbiol. Ecol., 77, 385-394. Keywords: compatible solute; stress tolerance; extracellular; polysaccharide; water stress protein (WspA) Strain(s): 2538,  2539  DOI: 10.1111/j.1574-6941.2011.01114.x Sakamoto, T., Murata, N., Ohmori, M. 1991 The concentration of cyclic AMP and adenylate cyclase activity in cyanobacteria. Plant Cell Physiol., 32, 581-584. Keywords: adenylate cyclase; cyanobacterium; cyclic AMP; cyclic nucleotide phosphodiesterase Strain(s): 19  DOI: 10.1093/oxfordjournals.pcp.a078119 Sakata, T., Yoshikawa, T., Nishitarumizu, S. 2010 Purification of an algicidal substance produced by marine Pseudomonas sp. C55a-2. Mem, Fac. Fish. Kagoshima Univ., 59, 17-25. Keywords: algicidal substance; Chaetoceros; Chattonella; Heterosigma; Pseudomona Strain(s): 6,  121  Sakayama, H. 2008 Taxonomy of Nitella (Charales, Charophyceae) based on comparative morphology of oospores and multiple DNA marker phylogeny using cultured material. Phycol. Res., 56, 202-215. Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia Strain(s): 1611,  1628,  1634,  1704,  1705,  1706  DOI: 10.1111/j.1440-1835.2008.00502.x Sakayama, H., Arai, S., Nozaki. H., Kasai, F., Watanabe, M. M. 2006 Morphology, molecular phylogeny and taxonomy of Nitella comptonii (Charales, Characeae). Phycologia, 45, 417-421. Keywords: atpB gene; Charales; Charophyceae; internal transcribed spacer region; Japanese taxa; morphology; Nitella comptonii; oospores; psaB gene; rbcL gene; scanning electron microscopy; taxonomy Strain(s): 1704,  1705,  1706  DOI: 10.2216/05-31.1 Sakayama, H., Hara Y., Nozaki, H. 2004 Taxonomic re-examination of six species of Nitella (Charales, Charophyceae) from Asia, and phylogenetic relationships within the genus based on rbcL and atpB gene sequences. Phycologia, 43, 91-104. Strain(s): 1634  DOI: 10.2216/i0031-8884-43-1-91.1 Sakayama, H., Hara, Y., Arai, S., Sato, H., Nozaki, H. 2004 Phylogenetic analyses of Nitella subgenus Tieffallenia (Charales, Charophyceae) using nuclear ribosomal DNA internal transcribed spacer sequences. Phycologia, 43, 672-681. Strain(s): 1628  DOI: 10.2216/i0031-8884-43-6-672.1 Sakayama, H., Miyaji, K., Nagumo, T., Kato, M., Hara Y., Nozaki, H. 2005 Taxonomic re-examination of 17 species of Nitella subgenus Tieffallenia (Charales, Charophyceae) based on internal morphology of the oospore wall and multiple DNA marker sequences. J. Phycol., 41, 195-211. Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia Strain(s): 1628  DOI: 10.1111/j.1529-8817.2005.04133.x Sakio, Y., Ishibashi, M., Okuyama, E. 2000 Chemical constituents of a diatom Triceratium dubium. Nat. Med., 54, 104. Keywords: Triceratium dubium; diatom; microalgae; epiloliolide; phaeophorbide Strain(s): 556  Sako, Y., Adachi, M., Ishida, Y. 1995 Specific monoclonal antibodies and DNA probes for the identification of the toxic dinoflagellate genus Alexandrium. In Harmful Marine Algal Blooms, Eds. by Lassus, P., et al., Lavoisier, Intercept Ltd., pp. 77-82. Strain(s): 5,  118  Sako, Y., Hosoi-Tanabe, S., Uchida, A. 2004 Fluorescence in situ hybridization using rRNA-targeted probes for simple and rapid identification of the toxic dinoflagelates Alexandrium tamarense and Alexandrium catenella. J. Phycol., 40, 598-605. Keywords: Alexandrium; FISH method; LSU rRNA; molecular identification; paralytic shellfish poisoning (PSP); probe; toxic dinoflagellate Strain(s): 1,  7,  12,  331  DOI: 10.1111/j.1529-8817.2004.03035.x Sakomoto, T., Takabe,Y., Uemura, T., Masuda, T., Hoshikawa, Y. 2020 Feed utilisation of Chlorella vulgaris cultivated with aquaculture effluent. J. Water Environ. Technol., 18, 17-26. Keywords: Chlorella vulgaris; aquaculture effluent; nutrient consumption; feed utilisation; amino acids Strain(s): 2170  DOI: 10.2965/jwet.19-069 Sakurai, K., Mori, N., Sato, N. 2014 Detection and characterization of phosphatidylcholine in various strains of the genus Chlamydomonas (Volvocales, Chlorophyceae). J. Plant Res., 127, 641-650. Keywords: Chlamydomonas; Delta 5 desaturase; Diacylglyceryl-N,N,N-trimethylhomoserine; Fatty acid; Phosphatidylcholine Strain(s): 2202,  2207,  2212,  2215,  2219,  2225,  2230,  2242,  2316,  2462,  2499  PubMed: 24947506 DOI: 10.1007/s10265-014-0644-0 Saldarriaga, J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R., Keeling, P. J. 2003 Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Microbiol., 53, 355-365. Strain(s): 304  PubMed: 12656195 DOI: 10.1099/ijs.0.02328-0 Saldarriaga, J. F., Taylor, F. J. R., Cavalier-Smith, T., Menden-Deuer, S., Keeling, P. J. 2004 Molecular data and the evolutionary history of dinoflagellates. Eur. J. Protistol., 40, 85-111. Keywords: Dinoflagellates; Ribosomal RNA; Chloroplast evolution; Molecular phylogeny; Theca; Photosynthesis Strain(s): 471  DOI: 10.1016/j.ejop.2003.11.003 Saldarriaga, J. F., Taylor, F. J. R., Keeling, P. J., Cavalier-Smith, T. 2001 Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J. Mol. Evol., 53, 204-213. Keywords: Plastid; Dinoflagellates; Small subunit rRNA; Phylogeny; Endosymbiosis Strain(s): 304,  463  PubMed: 11523007 DOI: 10.1007/s002390010210 Sandrini, G., Huisman, J., Matthijs, HC. 2015 Potassium sensitivity differs among strains of the harmful cyanobacterium Microcystis and correlates with the presence of salt tolerance genes. FEMS Mircobiol. Lett., 362 fnx121 (article ID). Keywords: compatible solutes; cyanobacteria; harmful algal blooms; lake mitigation; microcystins; salt stress Strain(s): 843  PubMed: 26208527 DOI: 10.1093/femsle/fnv121 Sano, D., Ishifuji, S., Sato, Y., Imae, Y., Takaara, T., Masago, Y., Omura, T. 2011 Identification and characterization of coagulation inhibitor proteins derived from cyanobacterium Microcystis aeruginosa. Chemosphere, 82, 1096-1102. Keywords: Aluminum-immobilized affinity; chromatography; Coagulation inhibition; Cyanobacterial protein; Microcystis aeruginosa; Phage display; Polyaluminum chloride Strain(s): 91  PubMed: 21211815 DOI: 10.1016/j.chemosphere.2010.12.005 Sano, T. & Kaya, K. 1995a Oscillamide Y, a chymotrypsin inhibitor from toxic Oscillatoria agardhii. Tetrahedron Letters, 36, 5933-5936. Strain(s): 610  DOI: 10.1016/0040-4039(95)01198-Q Sano, T. & Kaya, K. 1995b A 2-amino-2-butenoic acid (Dhb)-containing microcystin isolated from Oscillatoria agardhii. Tetrahedron Letters, 36, 8603-8606. Strain(s): 610  DOI: 10.1016/0040-4039(95)01824-2 Sano, T. & Kaya, K. 1996 Oscillapeptin G, a tyrosinase inhibitor from toxic Oscillatoria agardhii. J. Nat. Prod., 59, 90-92. Strain(s): 610  Sano, T., Takagi, H., Kaya, K. 2004 A Dhb-microcystin from the filamentous cyanobacterium Planktothrix rubescens. Phytochemistry, 65, 2159-2162. Keywords: Planktothrix rubescens; cyanobacterium; microcystin; Dhb-microcystin; hepatotoxin; cyanotoxin Strain(s): 928  DOI: 10.1016/j.phytochem.2004.03.034 Sano, T., Takagi, H., Nagano, K., Nishikawa, M., Kaya, K. 2011 Accurate LC-MS analyses for microcystions using per-15N-labeled microcystins. Anal. Bioanal. Chem., 399, 2511-2516. Keywords: Microcystin; Stable isotope; Surrogate; Liquid chromatography-mass spectrometry; Accurate analysis Strain(s): 107  PubMed: 21221535 DOI: 10.1007/s00216-010-4639-y Sano, T., Usui, T., Ueda, K., Osada, H., Kaya, K. 2001 Isolation of new protein phosphatase inhibitors from two cyanobacteria species, Planktothrix spp. J. Nat. Prod., 64, 1052-1055. Strain(s): 905,  928  PubMed: 11520225 DOI: 10.1021/np0005356 Santaeufemia, S., Abalde, J., Torres, E. 2019 Eco-friendly rapid removal of triclosan from seawater using biomass of a microalgal species: Kinetic and equilibrium studies. J. Hazard. Mater., 369, 674-683. Keywords: Sorption; Phaeodactylum tricornutum; Removal; Kinetic Strain(s): 4392  PubMed: 30826560 DOI: 10.1016/j.jhazmat.2019.02.083 Sarai, C., Tanifuji, G., Nakayama, T., Kamikawa, R., Takahashi, K., Yazaki, E., Matsuo, E., Miyashita, H., Ishida, K-I., Iwataki, M., Inagaki, Y. 2020 Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc. Nati. Acad. Sci. U. S. A., 117, 5364-5375. Keywords: secondary endosymbiosis; nucleomorph; endosymbiotic gene transfer; plastid; Pedinophyceae Strain(s): 1868  PubMed: 32094181 DOI: 10.1073/pnas.1911884117 Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L. 2023 Contributions on Lindane Degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID). Keywords: Microcystis; lindane; linC; pesticides; bioremediation Strain(s): 843  DOI: 10.3390/w14081219 Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L., Sevilla, E. 2022 Contributions on lindane degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID). Keywords: Microcystis; lindane; linC; pesticides; bioremediation Strain(s): 843  DOI: 10.3390/w14081219 Sardool, G., Daud, M. A., Hamatani, Y., Megat, M. J., Noor, M., Ustumi, M., Goto, M., Sugiura, N., Ujang, Z. 2021 Suppression of Aphanizomenon flos-aquae by solid polymer electrode (SPE) membrane electrolysis with aerated systems. PERINTIS eJournal, 11, 1-22. Keywords: advance oxidation; aeration; cyanobacteria; degradation; electrolysis Strain(s): 1258  Sargent, D. F. & Taylor, C. P. S. 1972 Light-induced inhibition of respiration in DCMU-poisoned Chlorella caused by phytosystem I activity. Can. J. Bot., 50, 13-21. Strain(s): 2151  DOI: 10.1139/b72-003 Sartoni, G. & Sonni, C. 1991 Tribonema marinum J. Feldmann and Acinetospora crinita (Carmichael) Sauvageau in the benthic mucilaginous aggregates observed along Tuscan shores during the summer of 1991. Informatore Botanico Italiano, 23, 23-30 (in Italian with English summary). Strain(s): 548  Saruwatari, K., Satoh, M., Harada, N., Suzuki, I., Shiraiwa, Y. 2016 Change in coccolith morphology by responding to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi Seas. Biogeosciences, 13, 2743-2755. Strain(s): 1311,  3362,  3366  DOI: 10.5194/bg-13-2743-2016 Sasa, T. 1957 Effect of photphorescent particles suspended in the medium upon the efficiency of light-energy utilization by Chlorella cells. J. Gen. Appl. Microbiol., 3, 121-124. Strain(s): 2170  DOI: 10.2323/jgam.3.121 Sasa, T., Kunieda, R., Tamiya, H. 1960 Growing Daphnia (water-fleas) with Chlorella. J. Gen. Appl. Microbiol., 6, 252-255. Strain(s): 2170  Sasa, T., Suda, S., Watanabe, M. M., Takaichi, S. 1992 A yellow marine Chlamydomonas: morphology and pigment composition. Plant Cell Physiol., 33, 527-534. Keywords: carotenoid; Chlamydomonas; Chlamydomonas parkeae; Chlorophyta; ultrastructure; 2,4-divinylprotochlorophyllide (DVP); flagellar apparatus; siphonaxanthin; siphonaxanthin decenoate; siphonaxanthin dodecenoate; siphonaxanthin octenoate Strain(s): 440  DOI: 10.1093/oxfordjournals.pcp.a078286 Sasa, T., Takaichi, S. Hatakeyama, N., Watanabe, M. M. 1992 A novel carotenoid ester, loroxanthin dodecenoate, from Pyramimonas parkeae (Prasinophyceae) and a chlorarachniophycean alga. Plant Cell Physiol., 33, 921-925. Keywords: (3R,3'R,6'R)-β,ε-carotene-3,19,3'-triol 19-(2-dodecanoate); chlorarachniophyte; 1H-NMR; loroxanthin dodecenoate; Pyramimonas parkeae Strain(s): 254  DOI: 10.1093/oxfordjournals.pcp.a078342 Sasaki, G., Katoh, K., Hirose, N., Suga, H., Kuma, K., Miyata, T., Su, Z. H. 2007 Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes. Gene, 401(1-2), 135-144. Keywords: conjugate alga; stonewort; gene family; divergence; phylogenetic tree; molecular evolution Strain(s): 228  DOI: 10.1016/j.gene.2007.07.009 Sasaki, K., Marquez, F. J., Nishio, N., Nagai, S. 1995 Promotive effect of 5-aminolevulinic acid on the growth and photosynthesis of Spirulina platensis. J. Ferment. Bioeng., 79, 453-457. Keywords: 5-aminolevulinic acid; Spirulina platensis; phycocyanin; chlorophyll Strain(s): 39  DOI: 10.1016/0922-338X(95)91261-3 Satjarak, A. & Graham, L. E. 2017 Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes. J. Phycol., 53, 415-424. Keywords: chloroplast DNA variation; chloroplast genome; intraspecific variation; prasinophyte; Pyramimonas parkeae Strain(s): 254  PubMed: 28130930 DOI: 10.1111/jpy.12515 Sato, M., Mogi, Y., Nishikawa, T., Miyamura, S., Nagumo, T., Kawano, S. 2009 The dynamic surface of dividing cyanelles and ultrastructure of the region directly below the surface in Cyanophora paradoxa. Planta, 229, 781-791. Keywords: Chloroplast division; Cyanelle; Field emission (FE)-SEM; Glaucocystophyta; Peptidoglycan; FtsZ Strain(s): 547  PubMed: 19096871 DOI: 10.1007/s00425-008-0872-4 Sato, M., Murata, Y., Mizusawa, M., Iwahashi, H., Oka, S.-I. 2004 A simple and rapid dual-fluorescence viability assay for microalgae. Microbiol. Cult. Coll., 20, 53-59. Keywords: microalgae; SYTOX Green; viability assay; autofluorescence Strain(s): 32,  204  Sato, M., Nishikawa, T., Yamazaki, T., Kawano, S. 2005 Isolation of the plastid FtsZ gene from Cyanophora paradoxa (Glaucocystophyceae, Glaucocystophyta). Phycol. Res., 53, 93-96. Keywords: cyanelle; Cyanophora paradoxa; FtsZ; Glaucocystophyta; plastid division Strain(s): 547  DOI: 10.1111/j.1440-183.2005.00376.x Sato, N. 1988 Dual role of methionine in the biosynthesis of diacylglyceryltrimethylhomoserine in Chlamydomonas reinhardtii. Plant Physiol., 86, 931-934. Strain(s): 3284  PubMed: 16666011 DOI: 10.1104/pp.86.3.931 Sato, N. 1989 Modulation of lipid and fatty acid content by carbon dioxide in Chlamydomonas reinhardtii. Plant Sci., 61, 17-21. Keywords: carbon dioxide; Chlamydomonas; fatty acid; lipid Strain(s): 3284  DOI: 10.1016/0168-9452(89)90113-1 Sato, N. & Murata, N. 1980 Temperature shift-induced responses in lipids in the blue-green alga, Anabaena variabilis. The central role of diacylmonogalactosylglycerol in thermo-adaptation. Biochim. Biophys. Acta, 619, 353-366. Strain(s): 2093  PubMed: 6773583 DOI: 10.1016/0005-2760(80)90083-1 Sato, N. & Murata, N. 1981 Studies on the temperature shift-induced desaturation of fatty acids in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 22, 1043-1050. Keywords: Anabaena variabilis; cyanobacterium; fatty acid desaturation; monogalactosyl diacylglycerol; temperature shift Strain(s): 2093  Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga (cyanobacterium), Anabaena variabilis. III. UDPglucose: diacylglycerol glucosyltransferase in vitro. Plant Cell Physiol., 23, 1115-1120. Keywords: Anabaena variabilis; blue-green alga; glucosyltransterase; glyceroglycolipids; monoglucosyl diacylglycerol Strain(s): 2093  Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. I. Lipid class. Biochim. Biophys. Acta, 710, 271-278. Strain(s): 2093  DOI: 10.1016/0005-2760(82)90109-6 Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. II. Fatty acids and lipid molecular species. Biochim. Biophys. Acta, 710, 279-289. Strain(s): 2093  Sato, N., Katsumata, Y., Sato, K., Tajima, N. 2014 Cellular dynamics drives the emergence of supracellular structure in the Cyanobacterium, Phormidium sp. KS. Life-Basel, 4, 819-836. Keywords: cyanobacteria; Phormidium; supracellular structure; biofilm; spiral formation; emergence of order; slime gun model Strain(s): 4263  PubMed: 25460162 DOI: 10.3390/life4040819 Sato, N., Mori, N., Hirashima, T., Moriyama, T. 2016 Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis. Plant J., 87, 281–292. Keywords: Chlamydomonas; Cyanidioschyzon merolae; phosphatidylcholine biosynthesis; phosphatidylethanolamine methyltransferase; phosphoethanolamine methyltransferase Strain(s): 2207,  2242  PubMed: 27133435 DOI: 10.1111/tpj.13199 Sato, N., Moriyama, T. 2007 Genomic and biochemical analysis of lipid biosynthesis in the unicellular Rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. Eukaryot. Cell, 6, 1006-1017. Strain(s): 3377  PubMed: 17416897 DOI: 10.1128/EC.00393-06 Sato, N., Murata, N., Miura, Y., Ueta, N. 1979 Effect of growth temperature on lipid and fatty acid compositions the blue-green algae, Anabaena variabilis and Anacystis nidulans. Biochim. Biophys. Acta, 572, 19-28. Strain(s): 2093,  3277  PubMed: 104734 DOI: 10.1016/0005-2760(79)90196-6 Sato, N., Seyama, Y., Murata, N. 1986 Lipid-linked desaturation of palmitic acid in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis studied in vivo. Plant Cell Physiol., 27, 819-835. Keywords: Anabaena variabilis; blue-green alga (cyanobacterium); lipid-linked desaturation; mass spectroscopy; monogalactosyl diacylglycerol; palmitoleic acid biosynthesis Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a077168 Sato, N., Yoshitomi, T., Mori-Moriyama, N. 2020 Characterization and biosynthesis of lipids in Paulinella micropora MYN1. Evidence for efficient integration of chromatophores into cellular lipid metabolism. Plant Cell Physiol., 61, 869–881. Keywords: Paulinella micropora; Betaine lipid; chromatophore; endosymbiosis; lipid metabolism; metabolic flow Strain(s): 4060  PubMed: 32044983 DOI: 10.1093/pcp/pcaa011 Sato, R., Fujishima, H., Itabashi, Y. 2003 Analysis of algal phosphatidylglycerols by chiral phase high-performane liquid chromatography. Bull. Fish. Sci. Hokkaido Univ., 54, 7-12 (in Japanese with English summary). Keywords: phosphatidylglycerol; diastereomer; Enteromorpha sp.; Chlorella vulgaris; Heterosigma akashiwo; spinach; parsley; green tea; chiral phase HPLC; 3,5-dinitrophenylurethane Strain(s): 227  Sato, S., Nishimura, T., Uehara, K., Sakanari, H., Tawong, W., Hariganeya, N., Smith, K., Rhodes, L., Yasumoto, T., Taira, Y., Suda, S., Yamaguchi, H., Adachi, M. 2011 Phylogeography of Ostreopsis along West Pacific coast, with special reference to a novel clade from Japan. PLoS One, 6, e27983 (article ID). Strain(s): 3351  PubMed: 22164222 DOI: 10.1371/journal.pone.0027983 Sato, T. & Hori, K. 2009 Cloning, expression, and characterization of a novel anti-HIV lectin from the cultured cyanobacterium, Oscillatoria agardhii. Fish. Sci., 75, 743-753. Keywords: anti-HIV; high-mannose N-glycans; Oscillatoria agardhii; lectin; recombinant lectin Strain(s): 204  DOI: 10.1007/s12562-009-0074-4 Sato, Y., Ito, A., Tate, N., Sasaki, A., Aizawa, J., Umita, T. 2008 Impact of coexistent metal on survival of diatom in presence of polynuclear hydroxy-alminium ion. Environ. Eng. Res., 45, 139-145. Keywords: polynuclear hydroxyl-Aluminium ion; diatom; complex ecological impact of coexistent metal cations Strain(s): 487  Sato, Y., Murakami, M., Miyazawa, K., Hori, K. 2000 Purification and characterization of a novel lectin from a freshwater cyanobacterium, Oscillatoria agardhii. Comp. Biochem. Physiol., Part B 125, 169-177. Keywords: agglutinins; blue-green algae; cyanobacteria; carbohydrate-binding specificity; isolation; lectin; eucheuma; Myxococcus xanthus; Oscillatoria agardhii; N-terminal sequence Strain(s): 204  PubMed: 10817903 DOI: 10.1016/S0305-0491(99)00164-9 Sato, Y., Okuyama, S., Hori, K. 2007 Primary structure and carbohydrate binding specificity of a potent anti-HIV lectin isolated from the filamentous cyanobacterium Oscillatoria agardhii. J. Biol. Chem., 282, 11021-11029. Strain(s): 204  PubMed: 17314091 DOI: 10.1074/jbc.M701252200 Satoh, E., Satoh, S., Fujii, T. 1992 Synchronization of phosphorylation of a chloroplast protein with the cell division cycle in Heterosigma akashiwo. Plant Cell Physiol., 33, 275-280. Keywords: cell cycle; chloroplast stromal protein; Heterosigma akashiwo; protein phosphorylation Strain(s): 6  DOI: 10.1093/oxfordjournals.pcp.a078251 Satoh, H. & Takeda, H. 1989 Detection and first characterization of a cell-wall lytic activity in Chlorella ellipsoidea C-27. Physiol. Plant., 77, 20-26. Keywords: autolysis; cell wall; Chlorella; lytic activity Strain(s): 2170  DOI: 10.1111/j.1399-3054.1989.tb05972.x Satoh, M., Iwamoto, K., Suzuki, I., Shiraiwa, Y. 2009 Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions. Mar. Biotechnol., 11, 327-333. Keywords: calcification; coccolith production; coccolithophore; cold stress; Emiliania huxleyi; phosphate deprivation Strain(s): 837  PubMed: 18830665 DOI: 10.1007/s10126-008-9147-0 Sausen, N., Malavasi, V., Melkonian, M. 2018 Molecular phylogeny, systematics and revision of the type species of Lobomonas, L. francei,(Volvocales, Chlorophyta) and closely related taxa. J. Phycol., 54, 198-214. Keywords: crystalline glycoprotein lattice; CWClade; ITS2; L. panduriformis; rbcL; Reinhardtinia; scanning electron microscopy; SSU nrRNA Strain(s): 257,  418,  456,  474,  541,  566,  577,  666,  735,  879,  880,  882,  883,  1362,  1708,  1858,  2567,  3923  PubMed: 29278416 DOI: 10.1111/jpy.12615 Sawada, K. & Shiraiwa, Y. 2004 Alkenone and alkenoic acid compositions of the membrane fractions of Emiliania huxleyi. Phytochemistry, 65, 1299-1307. Keywords: coccolithophorid; Emiliania huxleyi; Haptophyceae; alkenones; alkenoic acids; lipid biomarker; membrane fractionation; intracellular localization; unsaturation index Strain(s): 837  DOI: 10.1016/j.phytochem.2004.03.015 Sawada, K., Handa, N., Shiraiwa, Y., Danbara, A., Montani, S. 1996 Long-chain alkenones and alkyl alkenoates in the coastal and pelagic sediments of the northwest North Pacific, with special reference to reconstruction of Emiliania huxleyi and Gephyrocapsa oceanica ratios. Org. Geochem., 24, 751-764. Keywords: alkenone, alkyl alkenoate; Uk'37; EE/K37; EE/K38; Emiliania huxleyi; Gephyrocapsa oceanica; coccolithophorid assemblage; northwest North Pacific sediment Strain(s): 837,  838  DOI: 10.1016/S0146-6380(96)00087-3 Scanlan, D. J., Hess, W. R., Partensky, F., Newman, J., Vaulot, D. 1996 High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. Eur. J. Phycol., 31, 1-9. Strain(s): 2880,  2881,  2882  DOI: 10.1080/09670269600651131 Scheibe, J. 1972 Photoreversible pigment: occurrence in a blue-green alga. Science, 176, 1037-1039. Strain(s): 37  PubMed: 17778430 DOI: 10.1126/science.176.4038.1037 Schlüter, L., David, G. S., Jørgensen, N. O. G., Podduturi, R., Tucci, A., Dias, A. S., da Silva, R. J. 2018 Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production. Aquac. Environ. Interact., 10, 35-48. Keywords: Microcystins; Pigment analysis; Cyanobacteria; Phytoplankton composition; HPLC; Fish farm Strain(s): 107  DOI: 10.3354/aei00256 Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S., Kroutil, W. 2020 Extending the library of light-dependent protochlorophyllide oxidoreductases and their solvent tolerance, stability in light and cofactor lexibility. ChemCatChem, 12, 4044-4051. Strain(s): 3755  DOI: 10.1002/cctc.202000561 Schoevaert, D., Krishnamswamy, S., Couturier, M., Marano, F. 1988 Ciliary beat and cell motility of Dunaliella: computer analysis of high speed microcinematography. Biol. Cell, 62, 229-240. Strain(s): 2253  DOI: 10.1111/j.1768-322X.1988.tb00725.x Schönknecht, G., Chen, W.-H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Bräutigam, A., Baker, B. J., Banfield, J. F., Garavito, R. M., Carr, K., Wilkerson, C., Rensing, S. A., Gagneul, D., Dickenson, N. E., Oesterhelt, C., Lercher, M. J., Weber, A. P. M. 2013 Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, , 1207-1210. Strain(s): 3638  PubMed: 23471408 DOI: 10.1126/science.1231707 Schulze, D., Robenek, H., McFadden, G. I., Melkonian, M. 1987 Immunolocalization of a Ca2+-modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector. Eur. J. Cell Biol., 45, 51-61. Strain(s): 2253  Schwarze, P., Frandsen, N. O. 1960 Herstellung von Chlorella-Farbmutanten mit Hilfe von radioaktiven Isotopen. Naturwissenschaften, 47, 47. Strain(s): 2161,  2162  Schwender, J., Gemünden, C., Lichtenthaler, H. K. 2001 Chlorophyta exclusively use the 1-deoxyxylulose 5-phosphate/2-C-methylerythritol 4-phosphate pathway for the biosynthesis of isoprenoids. Planta, 212, 416-423. Keywords: Charophyta; 1-Deoxy-D-xylulose; Green alga; Isopentenyl diphosphate; Isoprenoid biosynthesis; Mevalonate Strain(s): 296  PubMed: 11289606 DOI: 10.1007/s004250000409 Seger, M., Mammadova, F., Villegas-Valencia, M., de Freitas, B. B., Chang, C. R. S., Isachsen, I., Hemstreet, H., Abualsaud, F., Boring, M., Lammers, P. J., Lauersen, K. J. 2023 Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga Cyanidioschyzon merolae 10D. Metab. Eng. Commun., 17, e00226 (article ID). Keywords: Microalgae; red algae; ketocarotenoids; Cyanidiophyceae; polyextremophiles; astaxanthin Strain(s): 3377  PubMed: 37449053 DOI: 10.1016/j.mec.2023.e00226 Sekiguchi, M., Ohtsuki, A., Shibata, Y., Morita, M. 1995 Arsenic compounds accumulated in phytoplanktons of marine origin. J. Environ. Chem. [Kankyô-Kagaku], 5, 366-367 (in Japanese with English title). Strain(s): 16,  208,  440  Sekiguchi, Y., Kobayashi, A., Takayama, Y., Oide, M., Fukuda, A., Yamamoto, Y., Okajima, K., Oroguchi, T., Hirakawa, T., Inui, Y., Matsunaga, S., Yamamoto, M., Nakasako, M. 2018 Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 153-173. Strain(s): 2087  DOI: 10.1007/978-981-10-6101-1_10 Sekimoto, H. 2000 Intercellular communication during sexual reproduction of Closterium (Conjugatophyceae). J. Plant Res., 113, 343-352. Keywords: chemotaxis; Closterium; conjugation; mating; sex pheromone; sexual reproduction Strain(s): 64,  65,  228,  229  DOI: 10.1007/PL00013941 Sekimoto, H. 2002 Production and secretion of a biologically active Closterium sex pheromone by Saccharomyces cerevisiae. Plant Physiol. Biochem., 40, 789-794. Keywords: Closterium; conjugation; pheromone; PR-IP; sexual reproduction Strain(s): 67,  68  DOI: 10.1016/S0981-9428(02)01432-8 Sekimoto, H. 2004 Molecular characterization of a novel sex pheromone, PR-IP inducer, in Closterium peracerosum-strigosum-littorale complex. Jpn. J. Phycol. (Sôrui), 52, Suppl., 117-122. Keywords: Closterium; conjugation; gamete mating; sex pheromone, sexual reproduction Strain(s): 67,  68  Sekimoto, H. 2017 Sexual reproduction and sex determination in green algae. J. Plant Res., 130, 423-431. Keywords: Closterium; Chlamydomonas; Sexual reproduction; Sex determination Strain(s): 67,  68  PubMed: 28188480 DOI: 10.1007/s10265-017-0908-6 Sekimoto, H. & Fujii, T. 1991 Sexual reproduction of microalgae : its physiological and biochemical study. Cell Science, 7, 562-571 (in Japanese with English title). Strain(s): 67,  68  Sekimoto, H. & Fujii, T. 1992 Analysis of gametic protoplast release in the Closterium peracerosum-strigosum-littorale complex (Chlorophyta). J. Phycol., 28, 615-619. Keywords: biologically active glycoprotein; Closterium peracerosum-strigosum-littorale complex; conjugation; gametic protoplast release Strain(s): 67,  68  DOI: 10.1111/j.0022-3646.1992.00615.x Sekimoto, H. & Fujii, T. 1993 Cell-cell interaction involved in the sexual reproduction of Closterium [Mikadukimo no yûsei seisyoku ni kakawaru saibôkan jôhô kôkan]. Iden, 47 (1), 43-48 (in Japanese). Strain(s): 64,  65,  67,  68  Sekimoto, H. & Fukumoto, R. 1999 Sex pheromones in Closterium. Chem. Regul. Plant, 34, 305-315. Strain(s): 64,  65,  67,  68  Sekimoto, H., Fukumoto, R., Dohmae, N., Takio, K. Fujii, T., Kamiya, Y. 1998 Molecular cloning of a novel sex pheromone responsible for the release of a different sex pheromone in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 39, 1169-1175. Keywords: Clostreium; conjugation; gamete; mating; sex pheromone; sexual reproduction Strain(s): 67,  68  DOI: 10.1093/oxfordjournals.pcp.a029317 Sekimoto, H., Komiya, A., Tsuyuki, N., Kawai, J., Kanda, N., Ootsuki, R., Suzuki, Y., Toyoda, A., Fujiyama, A., Kasahara, M., Abe, J., Tsuchikane, Y., Nishiyama, T. 2023 A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. New Phytol., 237, 1636-1651. Keywords: Closterium peracerosum-strigosum-littorale complex; mating type; RWP-RK; sex determination; sexual reproduction; streptophyta; Zygnematophyceae Strain(s): 67,  69  PubMed: 36533897 DOI: 10.1111/nph.18662 Sekimoto, H., Satoh, S., Fujii, T. 1990 Biochemical and physiological properties of a protein inducing protoplast release during conjugation in the Closterium peracerosum-strigosum-littorale complex. Planta, 182, 348-354. Keywords: Clostreium; conjugation (Closterium); glycoprotein; protoplast release in conjugation Strain(s): 67,  68  DOI: 10.1007/BF02411384 Sekimoto, H., Satoh, S., Fujii, T. 1992 Biochemical and physiological properties of a gametic protoplast-release-inducing protein in Closterium. Korean J. Phycol., 7, 121-129. Keywords: Clostreium; conjugation; glycoprotein; protoplast release in conjugation Strain(s): 67,  68  Sekimoto, H., Satoh, S., Fujii, T. 1993 Analysis of binding of biotinylated protoplast-release-inducing protein that induces release of gametic protoplasts in the Closterium peracerosum-strigosum-littorale complex. Planta, 189, 468-474. Keywords: Clostreium; conjugation (Closterium); protoplast-release; inducing protein; pheromone; receptor Strain(s): 67,  68  PubMed: 24178507 DOI: 10.1007/BF00194447 Sekimoto, H., Sone, Y., Fujii, T. 1994 A cDNA encoding a 19-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 105, 447. Strain(s): 67  PubMed: 8029362 DOI: 10.1104/pp.105.1.447 Sekimoto, H., Sone, Y., Fujii, T. 1994 cDNA cloning of a 42-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 104, 1095-1096. Strain(s): 67  PubMed: 8165253 DOI: 10.1104/pp.104.3.1095 Sekimoto, H., Sone, Y., Fujii, T. 1994 Regulation of expression of the genes for a sex pheromone by an inducer of the sex pheromone in the Closterium peracerosum-strigosum-littorale complex. Planta, 193, 137-144. Keywords: Clostreium complex; inducer (of protoplast-release-inducing protein); pheromone; protoplast-release-inducing protein (PR-IP); sexual reproduction Strain(s): 67,  68  PubMed: 7764622 DOI: 10.1007/BF00191617 Sekimoto, H., Sone, Y., Fujii, T. 1995 Biochemical, physiological, and molecular analysis of sexual isolation in the species complex Closterium peracerosum-strigosum-littorale (Chlorophyta). J. Phycol., 31, 611-615. Keywords: Chlorophyta; Closterium peracerosum-strigosum-littorale complex; conjugation; pheromone; plotoplast-release-inducing protein (PR-IP); sexual isolation Strain(s): 64,  65,  67,  68  DOI: 10.1111/j.1529-8817.1995.tb02557.x Sekimoto, H., Tanabe, Y., Takizawa, M., Ito, N., Fukumoto, R., Ito, M. 2003 Expressed sequence tags from the Closterium peracerosum-strigosum-littorale complex, a unicellular charophycean alga, in the sexual reproduction process. DNA Res., 10, 147-153. Keywords: Closterium; conjugation; EST; sexual reproduction Strain(s): 67,  68  PubMed: 14621293 DOI: 10.1093/dnares/10.4.147 Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Shirosaki, H., Fukuda,H., Demura, T., Ito, M. 2006 Gene expression profiling using cDNA microarray analysis of the sexual reproduction stage of the unicellular charophcean alga Closterium peracerosum-strigosum-littorale comples. Plant Physiol., 141, 271-279. Strain(s): 67,  69  PubMed: 16565296 DOI: 10.1104/pp.116.078048 Sekine, M. 2021 Coupling process of simultaneous desulfurization–nitrification and microalgal cultivation for biogas and effluent from anaerobic digestion. PhD thesis, Soka University, Japan, 128 pp. Strain(s): 2173  Sekine, M., Yoshida, A., Akizuki, S., Kishi, M., Toda, T. 2020 Microalgae cultivation using undiluted anaerobic digestate by introducing aerobic nitrification–desulfurization treatment. Wat. Sci. Tech., 82, 1070-1080. Keywords: aerobic sludge; anaerobic digestion effluent; Chlorella sorokiniana; free ammonia inhibition; post anaerobic digestion treatment; simultaneous bacterial process Strain(s): 2173  DOI: 10.2166/wst.2020.153 Sekino, K. & Shiraiwa, Y. 1994 Accumulation and utilization of dissolved inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 35, 353-361. Keywords: bicarbonate uptake; calcification; CO2 uptake; coccolithophorid; Emiliania huxleyi; inorganic carbon accumulation Strain(s): 837  DOI: 10.1093/oxfordjournals.pcp.a078603 Sekino, K. & Shiraiwa, Y. 1995 CO2 release from the culture of calcifying and noncalcifying marine unicellular algae. J. Mar. Biotechnol., 3, 101-104. Strain(s): 837  Sekino, K. & Shiraiwa, Y. 1996 Evidence for the involvement of mitochondrial respiration in calcification in a marine coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 37, 1030-1033. Keywords: calcification; CO2 fixation; coccolithophorids; Emiliania huxleyi; mitochondrial respiration; photosynthesis Strain(s): 837  DOI: 10.1093/oxfordjournals.pcp.a029034 Sekino, K., Kobayashi, H., Shiraiwa, Y. 1996 Role of coccoliths in the utilization of inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi: a survey using intact cells and protoplasts. Plant Cell Physiol., 37, 123-127. Keywords: calcification; coccolith; coccolithophorid; Emiliania huxleyi; inorganic carbon utilization; protoplast Strain(s): 837  DOI: 10.1093/oxfordjournals.pcp.a028921 Selivanova, E. A., Poshvina, D. V., Khlopko, Yu. A., Gogoleva, N. E., Plotnikov, A. O. 2018 Diversity of prokaryotes in planktonic communities of saline sol-iletsk lakes (Orenburg Oblast, Russia). Microbiology, 87, 569-582. Keywords: saline lakes; biodiversity; prokaryotes; halophilic bacteria; archaea; planktonic communities; high-throughput sequencing; Illumina; 16S rRNA gene Strain(s): 204,  1267  DOI: 10.1134/S0026261718040161 Senavirathna, M. D. H. J. & Jayasekara, M. A. D. D. 2023 Temporal variation of 2-MIB and geosmin production by Pseudanabaena galeata and Phormidium ambiguum exposed to high-intensity light. Water Environ. Res., 95, e10834 (article ID). Keywords: extreme light; filamentous cyanobacteria; growth suppression; odorous compounds; stress response Strain(s): 512,  2119  PubMed: 36635233 DOI: 10.1002/wer.10834 Senavirathna, M. D. H. J., Muhetaer, G., Atapaththu, K. S. S., Fujino, T. 2021 Egeria densa allelopathy on Microcystis aeruginosa under different light intensities and preliminary insight into inter-parameter relationships. Water Air Soil Pollut., 232, 135 (article ID). Keywords: Biological control; Cyanobacteria; Coexistence; Environmental management; Macrophytes; Species interactions Strain(s): 111  DOI: 10.1007/s11270-021-05088-1 Seo, P-S. & Yokota, A. 2003 The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Micobiol., 49, 191-203. Keywords: cyanobacteria; gyrB; phylogeny; protein evolution; rpoC1; rpoD1; 16S rDNA Strain(s): 19,  21,  22,  25,  39,  104,  2093,  2095,  2128,  3277  PubMed: 12949700 DOI: 10.2323/jgam.49.191 Seto, K. & Degawa, Y. 2018 Collimyces mutans gen. et sp. nov. (Rhizophydiales, Collimycetaceae fam. nov.), a new chytrid parasite of Microglena (Volvocales, clade Monadinia). Protist, 169, 507-520. Keywords: Chytrid; Collimyces mutans; Microglena; parasite; Rhizophydiales; zoospore ultrastructure Strain(s): 755,  858,  2220,  2235,  2743,  2744  PubMed: 29935342 DOI: 10.1016/j.protis.2018.02.006 Seto, K., Nakada, T., Tanabe, Y., Yoshida, M., Kagami, M. 2022 Aphelidium parallelum, sp. nov., a new aphelid parasitic on selenastracean green algae. Mycologia, 114, 544-555. Keywords: Aphelida; Aphelidiomycota; molecular phylogeny; parasitoid; ultrastructure; 1 new taxon Strain(s): 35,  385,  2193,  2195,  4214  PubMed: 35605094 DOI: 10.1080/00275514.2022.2039487 Setohigashi, Y., Hamaji, T., Hayama, M., Matsuzaki, R., Nozaki, H. 2011 Uniparential inheritance of chloroplast DNA is strict in the isogamous volvocalean Gonium. PLoS One, 6, e19545 (article ID). Strain(s): 2455,  2457  PubMed: 21559302 DOI: 10.1371/journal.pone.0019545 Sevilla, J. B., Nakajima, F., Kasuga, I. 2014 Comparison of aquatic and dietary exposure of heavy metals Cd, Cu, and Zn to benthic ostracod Heterocypris incongruens. Environ. Toxicol. Chem., 33, 1624-1630. Keywords: Aqueous exposure; Heavy metal; Dietary exposure; Ostracod; Sediment Strain(s): 2170  PubMed: 24691681 DOI: 10.1002/etc.2596 Shao, J., He, Y., Li, F., Zhang, H., Chen, A., Luo, S., Gu, J.-D. 2016 Growth inhibition and possible mechanism of oleamide against the toxin-producing cyanobacterium Microcystis aeruginosa NIES-843. Ecotoxicology, 25, 225-233. Keywords: Oleamide; Microcystis aeruginosa; Growth inhibition; Photosynthesis; Microcystins Strain(s): 843  PubMed: 26547872 DOI: 10.1007/s10646-015-1582-x Shao, J., Jiang, Y., Wang, Z., Peng, L., Luo, S., Gu, J., Li, R. 2014 Interactions between algicidal bacteria and the cyanobacterium Microcystis aeruginosa: lytic characteristics and physiological responses in the cyanobacteria. Int. J. Environ. Sci. Technol., 11, 469-476. Keywords: Bacillus sp.; Gene expressions; Lytic characteristics; Microcystis aeruginosa; Oxidative stress; Photosynthesis inhibition Strain(s): 843  DOI: 10.1007/s13762-013-0205-4 Shao, J., Liu, D., Gong, D., Zeng, Q., Yan, Z., Gu, J.-D. 2013 Inhibitory effects of sanguinarine against the cyanobacterium Microcystis aeruginosa NIES-843 and possible mechanisms of action. Aquat. Toxicol., 142-143, 257-263. Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1 Strain(s): 843  PubMed: 24060579 DOI: 10.1016/j.aquatox.2013.08.019 Shao, J., Peng, L., Luo, S., Yu, G., Gu, J.-D., Lin, S., Li, R. 2013 First report on the allelopathic effect of Tychonema bourrellyi (Cyanobacteria) against Microcystis aeruginosa (Cyanobacteria). J. Appl. Phycol., 25, 1567-1573. Keywords: Tychonema bourrellyi; Microcystis aeruginosa; Allelopathy; Volatile substances; ß-Ionone; Cyanobacteria Strain(s): 843  DOI: 10.1007/s10811-012-9969-z Shao, J., Wang, Z., Liu, Y., Liu, H., Peng, X., Wei, X., Lei, M., Li, R. 2012 Physiological responses of Microcystis aeruginosa NIES-843 (cyanobacterium) under the stress of chitosan modified kaolinite (CMK) loading. Ecotoxicology, 21, 698-704. Keywords: Physiological responses; Microcystis aeruginosa; Chitosan modified kaolinite Strain(s): 843  PubMed: 22095162 DOI: 10.1007/s10646-011-0828-5 Shao, J., Xu, Y., Wang, Z., Jiang, Y., Yu, G., Peng, X., Li, R. 2011 Elucidating the toxicity targets of β-ionone on photosynthetic system of Microcystis aeruginosa NIES-843 (cyanobacteria). Aquat. Toxicol., 104, 48-55. Keywords: Microcystis aeruginosa; Photosynthesis; Gene expression; Chlorophyll a fluorescence Strain(s): 843  PubMed: 21543049 DOI: 10.1016/j.aquatox.2011.03.014 Shao, J., Yu, G, Wang, Z., Wu, Z, Peng, X., Li, R. 2010 Towards clarification of the inhibitory mechanism of wheat bran leachate on Microcystis aeruginosa NIES-843 (cyanobacteria): physiological responses. Ecotoxicology, 19, 1634-1641. Keywords: Wheat bran leachate; Microcystis; Gene expression; Photosynthesis Strain(s): 843  PubMed: 20882340 DOI: 10.1007/s10646-010-0549-1 Sharifah, E. N. & Eguchi, M. 2011 The phytoplankton Nannochloropsis oculata enhances the ability ofRoseobacter clade bacteria to inhibit the growth of Vibrio anguillarum. PLoS One, 6, e26756 (article ID). Strain(s): 2145  PubMed: 22053210 DOI: 10.1371/journal.pone.0026756 Sharifah, E. N. & Eguchi, M. 2012 Benefits of live phytoplankton, Chlorella vulgaris, as a biocontrol agent against fish pathogen Vibrio anguillarum. Fish. Sci., 78, 367-373. Keywords: Chlorella vulgaris; Vibrio anguillarum; Biocontrol; Sulfitobacter sp. Strain(s): 1269  DOI: 10.1007/s12562-011-0465-1 Shatari, Y. & Ogawa, S. 2001 Observation of cell division in Closterium (Zygnematales, Chlorophyta) and its application to the teaching materials in high school biology. Jpn. J. Biol. Educ., 41, 90-99 (in Japanese with English summary). Keywords: asexual reproduction; cell division; Closterium; teaching material Strain(s): 52,  182  Shen, M., Xu, JL., Tsang, TY., Au, D. W. T. 2010 Toxicity comparison between Chattonella marina and Karenia brevis using marine medaka (Oryzias melastigma): evidence against the suspected ichthyotoxins of Chattonella marina. Chemosphere, 80, 585-591. Keywords: Harmful algal blooms (HABs); Chattonella marina; Karenia brevis; Marine medaka; Brevetoxins; Free fatty acids Strain(s): 3  PubMed: 20444485 DOI: 10.1016/j.chemosphere.2010.03.051 Shen, O., Wang, Q., Miao, H., Shimada, M., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M., Shimizu, K. 2021 Temperature affects growth, geosmin/2-methylisoborneol production, and gene expression in two cyanobacterial species. Environ. Sci. Pollut. Res., 29, 12017–12026. Keywords: Cyanobacteria; Temperature; Cell growth; Geosmin; 2-MIB; Gene expression Strain(s): 512,  824  PubMed: 34558048 DOI: 10.1007/s11356-021-16593-5 Shen, Q., Shimizu, K., Miao, H., Tsukino, S., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M. 2020 Effects of elevated nitrogen on the growth and geosmin productivity of Dolichospermum smithii. Environ. Sci. Pollut. Res., 28, 177–184. Keywords: Geosmin; geoA Expression; Cyanobacteria; Nitrogen; Earthy-musty odor Strain(s): 824  PubMed: 32803599 DOI: 10.1007/s11356-020-10429-4 Shen, X. F., Xu, Y. P., Jiang, Y. F., Gao, L. J., Tong, X. Q., Gong, J., Yang, Y. F., Zeng, R. J. 2024 Evaluating nutrient limitation in co-culture of Chlorella pyrenoidosa and Rhodobacter sphaeroides. Sci. Total Environ., 906, 167706 (article ID). Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Nitrogen starvation Strain(s): 2168  PubMed: 37820812 DOI: 10.1016/j.scitotenv.2023.167706 Shen, X. F., Xu, Y. P., Tong, X. Q., Huang, Q., Zhang, S., Gong, J., Chu, F. F., Zeng, R. J. 2022 The mechanism of carbon source utilization by microalgae when co-cultivated with photosynthetic bacteria. Bioresour. Technol., 365, 28152 (article ID). Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Carbon mechanism Strain(s): 227,  2168,  2280  PubMed: 36265788 DOI: 10.1016/j.biortech.2022.128152 Shen, X.-F., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Biosynthesis of high yield fatty acids from Chlorella vulgaris NIES-227 under nitrogen starvation stress during heterotrophic cultivation. Water Res., 81, 294-300. Keywords: Microalgae; Nitrogen starvation; Heterotrophic cultivation; Fatty acid content; Fatty acid yield; Glucose Strain(s): 227  PubMed: 26081436 DOI: 10.1016/j.watres.2015.06.003 Shen, X.-F., Liu, J.-J., Chauhan, A. S., Hu, H., Ma, L.-L., Lam, P.K.S., Zeng, R. J. 2016 Combining nitrogen starvation with sufficient phosphorus supply for enhanced biodiesel productivity of Chlorella vulgaris fed on acetate. Algal Res., 17, 261-267. Keywords: Heterotrophic cultivation; Lipid productivity; Biodiesel; Microalgae; Nutrient regulation; pH control Strain(s): 227  DOI: 10.1016/j.algal.2016.05.018 Shen, X.-F., Liu, J.-J., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Enhancement of FAME productivity of Scenedesmus obliquus by combining nitrogen deficiency with sufficient phosphorus supply in heterotrophic cultivation. Appl. Energy, 158, 348-354. Keywords: Scenedesmus obliquus; Heterotrophic cultivation; Acetate; Nitrogen deficiency; Phosphorus; Biodiesel productivity Strain(s): 2280  DOI: 10.1016/j.apenergy.2015.08.057 Shen, X.-F., Qin, Q.-W., Yan, S.-K., Huang, J.-L., Liu, K., Zhou, S.-B. 2019 Biodiesel production from Chlorella vulgaris under nitrogen starvation in autotrophic, heterotrophic, and mixotrophic cultures. J. Appl. Phycol., 31, 1589–1596. Keywords: Fatty acid; Chlorella vulgaris; Chlorophyta; Heterotrophic cultivation; Mixotrophic cultivation; Nitrogen starvation; iTRAQ analysis Strain(s): 227  DOI: 10.1007/s10811-019-01765-1 Shen, X-F., Gao, L-J., Zhou, S-B., Huang, J-L., Wu, C-Z., Qin, Q-W., Zeng, R. J. 2020 High fatty acid productivity from Scenedesmus obliquus in heterotrophic cultivation with glucose and soybean processing wastewater via nitrogen and phosphorus regulation. Sci. Total Environ., , 134596 (article ID). Keywords: Scenedesmus obliquus; heterotrophic cultivation; soybean processing wastewater; nitrogen deficiency; phosphorus; biodiesel productivity Strain(s): 2280  PubMed: 31780158 DOI: 10.1016/j.scitotenv.2019.134596 Shen, X-F., Hu, H., Ma, L-L., Lam, P. K. S., Yan, S-K., Zhou, S-B., Zeng, R. J. 2018 FAMEs production from Scenedesmus obliquus in autotrophic, heterotrophic and mixotrophic cultures under different nitrogen conditions. Environ. Sci.-Wat. Res. Technol., 4, 461-468. Strain(s): 2280  DOI: 10.1039/C7EW00470B Sheng, B., Fan, F., Huang, J. K., Bai, W. M., Wang, J., Li, S. L., Li, W., Wan, M. X., Li, Y. G. 2018 Investigation on models for light distribution of Haematococcus pluvialis during astaxanthin accumulation stage with an application case. Algal Res., 33, 182-189. Keywords: Light attenuation model; Haematococcus pluvialis; CFD;Induction experiment Strain(s): 144  DOI: 10.1016/j.algal.2018.05.011 Shi, X., Chang, X., Guo, X., Zhao, C., Tong, S. 2021 Calcification moderates the biochemical responses of Gephyrocapsa oceanica to ocean acidification. Mar. Biol. Res., 17, 569-575. Strain(s): 1318  DOI: 10.1080/17451000.2021.2016841 Shi, Y., Liu, Y., Zhang, J., Gao, B. 2019 Regulation of five-antibiotic mixture on Microcystis aeruginosa exposed to sublethal doses of ultraviolet radiation. Int. J. Environ. Sci. Technol., 16, 8229–8238. Keywords: Cyanobacterial removal; Antibiotics contamination; Photosynthesis; Microcystins ; Antioxidant responses Strain(s): 843  DOI: 10.1007/s13762-019-02318-2 Shiba, K. & Inaba, K. 2017 Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae. J. Plant Res., 130, 465-473. Keywords: Calaxin; Cilia; Dynein; Opisthokont; Prasinophyte; Sperm flagella Strain(s): 626  PubMed: 28424932 DOI: 10.1007/s10265-017-0931-7 Shibakami, M. & Sohma, M. 2017 Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films. Carbohydr. Polym., 155, 416-424. Keywords: Paramylon; β-1,3-glucan; Thermoplastic; Acylation; Euglena Strain(s): 48  DOI: 10.1016/j.carbpol.2016.08.093 Shibakami, M. & Sohma, M. 2018 Thermal, crystalline, and pressure-sensitive adhesive properties of paramylon monoesters derived from an euglenoid polysaccharide. Carbohydr. Polym., 200, 239-247. Strain(s): 48  PubMed: 30177162 DOI: 10.1016/j.carbpol.2018.08.005 Shibakami, M., Sohma, M., Hayashi, M. 2012 Fabrication of doughnut-shaped particles from spheroidal paramylon granules of Euglena gracilis using acetylation reaction. Carbohydr. Polym., 87, 452-456. Keywords: Paramylon; B-1,3-Glucan; Paramylon doughnuts; Euglena gracilis; Acetylation Strain(s): 48  DOI: 10.1016/j.carbpol.2011.08.012 Shibata, A., Takahashi, F., Imamura, N., Kasahara, M. 2021 Characteristics of maltose transport system in the endosymbiont Chlorella variabilis of Paramecium bursaria. Phycol. Res., 69, 219-225. Strain(s): 227  DOI: 10.1111/pre.12461 Shibata, K., Morimura, Y., Tamiya, H. 1964 Precise measurement of the change of statistical distribution of cell size occurring during the synchronous culture of Chlorella. Plant Cell Physiol., 5, 315-320. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a079047 Shibata, M., Kashino, Y., Satoh, K., Koike, H. 2001 Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a glaucocystophyte, Cyanophora paradoxa. Plant Cell Physiol., 42, 733-741. Keywords: Cyanophora paradoxa; glaucocystophyte; oxygen evolution; photosystem II; PsbO; thylakoid membranes Strain(s): 547  PubMed: 11479380 DOI: 10.1093/pcp/pce092 Shibukawa, K., Takamura, Y., Takao, E., Irie, M., Yagi, O. 1986 Studies on the growth factors of an axenic clone of the cyanobacterium Microcystis aeruginosa K-3A. Jpn. J. Limnol., 47, 247-255 (in Japanese with English summary). Keywords: cyanobacteria; Microcystis; vitamin B12; growth factor Strain(s): 604  Shih, C., Chen, H., Lee, H., Tsai, H. 2015 Purple chromoprotein gene serves as a new selection marker for transgenesis of the microalga Nannochloropsis oculata. PLoS One, 10, e0120780 (article ID). Strain(s): 2146  PubMed: 25793255 DOI: 10.1371/journal.pone.0120780 Shihira, I. & Krauss, R. W. 1965 Chlorella. Physiology and taxonomy of forty-one isolates. , University of Maryland, College Park. pp. 1-97. Strain(s): 685,  687  Shihira-Ishikawa, I., Osafune, T., Ehara, T., Ohkuro, I., Hase, E. 1977 An early light-independent phase of chloroplast development in dark-grown cells of Euglena gracilis Z. I. Dependence of the plastid development on previous culture conditions. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 445-454. Strain(s): 48  Shikata, T., Kitatsuji, S., Yuasa, K. 2023 Strain, cell density, and nutrient condition affect patterns of diurnal vertical migration and superoxide production in a red-tide alga. Front. Cell. Dev. Biol., 11, 1134227 (article ID). Strain(s): 1  PubMed: 37123416 DOI: 10.3389/fcell.2023.1134227 Shikata, T., Taniguchi, E., Sakamoto, S., Kitatsuji, S., Yamasaki, Y., Yoshida, M., Oikawa, H. 2020 Phylogeny, growth and toxicity of the noxious red-tide dinoflagellate Alexandrium leei in Japan. Reg. Stud. Mar. Sci., 36, 101265 (article ID). Keywords: Fish; Haemolytic activity; Photoinhibition; rDNA; Rotifer; Temperature Strain(s): 2146  DOI: 10.1016/j.rsma.2020.101265 Shikata, T., Yuasa, K., Kitatsuji, S., Sakamoto, S., Akita, K., Fujinami, Y., Nishiyama, Y., Kotake, T., Tanaka, R., Yamasaki, Y. 2021 Superoxide Production by the Red Tide-Producing Chattonella marina Complex (Raphidophyceae) Correlates with Toxicity to Aquacultured Fishes. Antioxidants, 10, 1635 (article ID). Keywords: harmful algal bloom; interstrain variation; oxidant stress; reactive oxygen species (ROS) Strain(s): 1  PubMed: 34679769 DOI: 10.3390/antiox10101635 Shimada, A., Maruyama, T., Miyachi, S. 1996 Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankters, Prochlorococcus marinus and Synechococcus sp.. Mar. Biol., 127, 15-23. Strain(s): 2884,  2886  DOI: 10.1007/BF00993639 Shimada, K., Kitamura, N., Yoshida, Y., Matsushima, H., Asada, Y. 2010 Effects of water soluble extract from the dead leaves of deciduous trees on the growth control of toxic cyanobacteria like Microcystis aeruginosa. In Water Pollution X, Eds. by Marinov, A. M. & Brebbia, C. A., WIT Press, Bucharest. pp. 71-82. Strain(s): 102  Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017 Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis. Sci Rep., 7, 41022 (article ID). Strain(s): 48  PubMed: 28106164 DOI: 10.1038/srep41022 Shimakawa, G., Murakami, A., Niwa, K., Matsuda, Y., Wada, A., Miyake, C. 2019 Comparative analysis of strategies to prepare electron sinks in aquatic photoautotrophs. Photosynth. Res., 139, 401–411. Keywords: Reactive oxygen species; P700 oxidation; Photosystem I; Seaweeds Strain(s): 705,  1959,  2138,  2145,  2147  PubMed: 29845382 DOI: 10.1007/s11120-018-0522-z Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S. 2021 Coral symbionts evolved a functional polycistronic flavodiiron gene. Photosynth. Res., 151, 113–124. Keywords: Flavodiiron proteins; Polycistronic gene; Gene fusion; Coral symbionts; Evolution Strain(s): 4077  PubMed: 34309771 DOI: 10.1007/s11120-021-00867-7 Shimasaki, Y., Mukai, K., Takai, Y., Qiu, X., Oshima, Y. 2021 Recent progress in the study of peroxiredoxin in the harmful algal bloom species Chattonella marina. Antioxidants, 10, 162 (article ID). Keywords: 2-Cys peroxiredoxin; antioxidant enzyme; growth potential; photosynthesis; oxidative stress Strain(s): 1,  3  PubMed: 33499182 DOI: 10.3390/antiox10020162 Shimasaki, Y., Tsuyama, M., Tasmin, R., Khanam, M. R. M., Qiu, X., Oshima, Y. 2015 Comparative study of toxicological responses of chlorophyllrelated parameters in the marine diatom Skeletonema sp. exposed to tributyltin and Irgarol. Jpn. J. Environ. Toxicol., 18, 1-10. Keywords: tributyltin; Irgarol; diatom; chlorophyll; photosynthesis Strain(s): 324  DOI: 10.11403/jset.18.1 Shimba, S., Unno, K., Okada, S. 1993 Characteristics of the photosynthetic metabolism of carbon in deuterated Chlorella ellipsoidea C-27. Plant Cell Physiol., 34, 255-262. Keywords: Chlorella ellipsoidea; deuterium; isotope effect; photosynthetic metabolism of carbon Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a078415 Shimizu, I., Yamashita, K., Tokunaga, E. 2022 Development of a simple fabrication method for magnetic micro stir bars and induction of rotational motion in Chlamydomonas reinhardtii. Micromachines, 13, 1842 (article ID). Keywords: magnetic micro stirrer bar; microchip; motion analysis; microalga; Chlamydomonas; neodymium magnet; flagella; orbital motion Strain(s): 2238  PubMed: 36363863 DOI: 10.3390/mi13111842 Shimizu, K., Sano, T., Kubota, R., Kobayashi, N., Tahara, M., Obama, T., Sugimoto, N., Nishimura, T., Ikarashi, Y. 2014 Effects of the amino acid constituents of microcystin variants on cytotoxicity to primary cultured rat hepatocytes. Toxins, 6, 168-179. Keywords: microcystin; variants; cytotoxicity; primary cultured rat hepatocytes; environmental water Strain(s): 90,  595,  610,  928  PubMed: 24380975 DOI: 10.3390/toxins6010168 Shimizu, K., Utsumi, M., Okano, K., Itayama, T., Iwami, N., Maseda, H., Kinohira, H., Li, J., Inamori, Y., Zhang, Z., Sugiura, N. 2016 Removal of Microcystis aeruginosa cells and microcystin-LR using ceramic carrier in a continuous flow bioreactor. Jpn. J. Water Treat. Biol., 52, 35-43. Keywords: protozoa; water treatment; ceramic carrier; microcystin-producing; cyanobacteria Strain(s): 102  Shimizu, T., Oda, T., Ito, H., Imai, I. 2017 Isolation and characterization of algicidal bacteria and its effect on a musty odor-producing cyanobacterium Dolichospermum crassum in a reservoir. Water Sci. Technol.-Water Supply, 17, 792-798. Keywords: algicidal bacteria; Anabaena crassa; Dolichospermum crassum; geosmin; musty odor; Rheinheimera spp Strain(s): 4407  DOI: 10.2166/ws.2016.179 Shimogawara, K. & Muto, S. 1989 Heat shock induced change in protein ubiquitination in Chlamydomonas. Plant Cell Physiol., 30, 9-16. Keywords: ATP-dependent proteolytic system; Chlamydomonas; heat shock response; protein degradation; ubiquitin Strain(s): 2138  Shimonaga, T., Fujiwara, S., Kaneko, M., Izumo, A., Nihei, S., Francisco, P. B., Satoh, A., Fujita, Naoko., Nakamura, Y., Tsuzuki, M. 2007 Variation in Storage α-polyglucans of red algae: amylose and semi-amylopectin types in Porphyridium and goycogen type in Cyanidium. Mar. Biotechnol., 9, 192-202. Keywords: Amylose; glycogen; granule-bound starch synthase; red algae; semi-amylopection Strain(s): 551,  2138  PubMed: 17160635 DOI: 10.1007/s10126-006-6104-7 Shimonaga, T., Konishi, M., Oyama, Y., Fujiwara, S., Satoh, A., Fujita, N., Colleoni, C., Buléon, A., Putaux, J.-L., Ball, S. G., Yokoyma, A., Hara, Y., Nakamura, Y., Tsuzuki, M. 2008 Variation in Storage α-polyglucans of the Porphyridiales (Rhodophyta). Plant Cell Physiol., 49, 103-116. Keywords: Amylose; Floridean starch; Glycogen; Porphyridiales; Rhodophyta; Semi-amylopection Strain(s): 18,  144,  250,  530,  551,  2138,  2160,  2258,  2280  PubMed: 18079144 DOI: 10.1093/pcp/pcm172 Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2021 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101, 101942 (article ID). Keywords: 5S ribosomal RNA gene; Aeruginosin; Horizontal gene transfer; Microcystis; Prenyltransferase; Oscillatorin Strain(s): 204  PubMed: 33526179 DOI: 10.1016/j.hal.2020.101942 Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412. Keywords: comparative genomics; cyanobacteria; genome sequence; nitrogen fixation Strain(s): 2104  PubMed: 26494835 DOI: 10.1093/dnares/dsv022 Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017 Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970. GenomeA, 5, e00139-17 (article ID). Strain(s): 970  PubMed: 28385852 DOI: 10.1128/genomeA.00139-17 Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Agardhipeptins A and B, two new cyclic hepta- and octapeptide, from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 13129-13136. Strain(s): 204  DOI: 10.1016/0040-4020(96)00775-2 Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Aeruginosins 205A and -B, serine protease inhibitory glycopeptides from the cyanobacterium Oscillatoria agardhii (NIES-205). J. Org. Chem., 62, 1810-1813. Strain(s): 205  Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Anabaenopeptins E and F, two new cyclic peptides from the cyanobacterium Oscillatoria agardhii (NIES-204). J. Nat. Prod., 60, 139-141. Strain(s): 204  DOI: 10.1021/np960597p Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Circinamide, a novel papain inhibitor from the cyanobacterium Anabaena circinalis (NIES-41). Tetrahedron, 53, 5747-5754. Strain(s): 41  DOI: 10.1016/S0040-4020(97)00285-8 Shin, H. J., Murakami, M., Matsuda, H., Ishida, K., Yamaguchi, K. 1995 Oscillapeptin, an elastase and chymotrypsin inhibitor from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron Letters, 36, 5235-5238. Strain(s): 204  DOI: 10.1016/0040-4039(95)00980-Q Shin, H. J., Murakami, M., Matsuda, H., Yamaguchi, K. 1996 Microviridins D-F, serine protease inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 8159-8168. Strain(s): 204  DOI: 10.1016/0040-4020(96)00377-8 Shinobu, K., Abe, S., Asano, K., Abe, T. 1992 On the laboratory experiment of algal culturing (AGP-test) [Sôrui baiyô no shitsunai jikken (AGP shiken) ni tsuite]. Heisei 4-nendo Tôhoku Chihô Kensetsu-kyoku Kan-nai Gijutsu Kenkyû Happyôkai Shiryô, Kyô-28, 151-154 (in Japanese). Strain(s): 30  Shinozaki, A., Sato, N., Hayashi, Y. 2009 Peroxisomal targeting signals in green algae. Protoplasma, 235, 57-66. Keywords: Closterium; green algae; peroxisomal targeting signal (PTS); peroxisome; transport Strain(s): 228  PubMed: 19214701 DOI: 10.1007/s00709-009-0031-1 Shirabe, T., Ito, K., Yoshimura, E. 2008 Dequenching of Cu(I)-bathocuproinedisulfonate complexes for high-performance liquid chromatographic determination of phytochelatins, heavy-metal-binding peptides produced by the primitive red alga Cyanidioschyzon merolae. Anal. Chem., 80, 9360-9362. Strain(s): 3377  PubMed: 19551996 DOI: 10.1021/ac801741b Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027. Strain(s): 3715  PubMed: 18469125 DOI: 10.1128/AEM.00509-08 Shiraishi, H. 2015 Association of heterotrophic bacteria with aggregated Arthrospira platensis exopolysaccharides: implications in the induction of axenic cultures. Biosci. Biotechnol. Biochem., 79, 331-341. Keywords: cyanobacteria; Arthrospira platensis; exopolysaccharides; axenic cultures; Alcian blue Strain(s): 39,  46  PubMed: 25333502 DOI: 10.1080/09168451.2014.972333 Shiraishi, H. 2016 Cryopreservation of the edible alkalophilic cyanobacterium Arthrospira platensis. Biosci. Biotechnol. Biochem., 80, 2051-2057. Keywords: cyanobacteria; dietary supplements; spirulina; Arthrospira platensis; cryopreservation Strain(s): 39,  46,  2308  PubMed: 27240586 DOI: 10.1080/09168451.2016.1189320 Shiraishi, H. & Nishida, H. 2023 Complete genome sequence of the edible filamentous cyanobacterium Arthrospira platensis NIES-39, based on long-read sequencing. Microbiol. Resour. Ann., 12, e0113922 (article ID). Strain(s): 39  PubMed: 36537808 DOI: 10.1128/mra.01139-22 Shiraishi, H. & Toyoda, A. 2021 The use of a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide–based colorimetric assay in the viability analysis of the filamentous cyanobacterium Arthrospira platensis. Bioscience, Biotechnology, and Biochemistry, 85, 739-742. Keywords: colorimetric viability assay; cyanobacteria; heat sensitivity; spirulina Strain(s): 39  PubMed: 33624771 DOI: 10.1093/bbb/zbaa050 Shiraishi, H., Tabuse, Y. 2013 The AplI restriction-modification system in an edible cyanobacterium, Arthrospira (Spirulina) platensis NIES-39, recognizes the nucleotid sequence 5'-CTGCAG-3'. Biosci. Biotechnol. Biochem., 77, 782-788. Keywords: Arthrospira platensis; Spirulina; restriction enzyme; DNA methyltransferase; edible cyanobacteria Strain(s): 39  PubMed: 23563565 DOI: 10.1271/bbb.120919 Shiraiwa, Y. 2003 Physiological regulation of carbon fixation in the photosynthesis and calcification of coccolithophorids. Comp. Biochem. Physiol. B-Biochem. Mol. Biol., 136, 775-783. Keywords: carbon dioxide fixation; calcification; calcium carbonate crystal; cell growth; coccolith; coccolithophorids; Emiliania huxleyi; photosynthesis; nutrient-depletion effect; Warburg effect Strain(s): 837  PubMed: 14662302 DOI: 10.1016/S1096-4959(03)00221-5 Shiraiwa, Y. & Kayano, K. 2007 Coccolith. In Development of New Functional Materials Inspired by Biomineralization , Ed. By Kato, T., CMC Publications, Tokyo, pp. 52-63. Strain(s): 837  Shiraiwa, Y. & Miyachi, S. 1985 Effects of temperature and CO2 concentration on induction of carbonic anhydrase and changes in efficiency of photosynthesis in Chlorella vulgaris 11h. Plant Cell Physiol., 26, 543-549. Keywords: carbonic anhydrase; Chlorella vulgaris; CO2 concentration; photosynthesis; temperature Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a076938 Shiraiwa, Y. & Miyachi, S. 1985 Role of carbonic anhydrase in photosynthesis of blue-green alga (cyanobacterium) Anabaena variabilis ATCC 29413. Plant Cell Physiol., 26, 109-116. Keywords: Anabaena variabilis ATCC 29413; carbonic anhydrase; CO2 effect; CO2 transport; cyanobacterium; photosynthesis Strain(s): 2095  DOI: 10.1093/oxfordjournals.pcp.a076877 Shiraiwa, Y. & Miyachi, S. 1993 Factors controlling induction of carbonic anhydrase and efficiency of photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 24, 919-923. Keywords: carbonic anhydrase; Chlorella vulgaris (11h cell); CO2 fixation; photosynthesis Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a076596 Shiraiwa, Y., Danbara, A., Kanke, Y. 2004 Characterization of highly oxygen-sensitive photosynthesis in coccolithophorids. Jpn. J. Phycol. (Sôrui), 52, Suppl., 87-94. Keywords: CO2 fixation; coccolithophorids; Emiliania huxleyi; glycolate pathway; O2 effect; O2 inhibition; photorespiratory nitrogen cycle; Warburg effect Strain(s): 837,  838  Shiraiwa, Y., Fakler, J., Miyachi, S. 1981 Factors controlling carbonic anhydrase activity in Chlorella vulgalis 11h. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, pp. 493-499. Strain(s): 2160  Shiraiwa, Y., Goyal, A., Tolbert, N. E. 1993 Alkalization of the medium by unicellular green algae during uptake of dissolved inorganic carbon. Plant Cell Physiol., 34, 649-657. Keywords: alkalization; dissolved inorganic carbon concentrating mechanism; photosynthesis Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a078467 Shiraiwa, Y., Hatano-Sugimoto, Y., Satoh, M. 2003 Regulation of intracellular calcification and algal growth by nutrient supply in coccolithophorids. In Biomineralization (BIOM2001): formation, diversity, evolution and application, Proceedings of th 8th International Symposium on Biomineralization, Eds. by Kobayashi & Ozawa, pp. 241-246. Keywords: algal bloom; calcification; coccolithophorid; Emiliania huxleyi; Gephyrocapsa oceanica; nitrate; phosphate; nutrient-depletion Strain(s): 837,  838  Shiraiwa, Y., Yokoyama, S., Satoh, A. 1991 pH-dependent regulation of carbonic anhydrase induction and change in photosynthesis during adaptation of Chlorella cells to low CO2. Jpn. J. Phycol. (Sôrui), 39, 355-362. Strain(s): 2170  Shiratori, T., Akinori, Y., Ishida, K-I. 2020 Morphology, ultrastructure, and phylogeny of two novel species of Ventrifissura (V. oblonga n. sp. and V. velata n. sp., Thecofilosea, Cercozoa). Protist, 171, 125731 (article ID). Strain(s): 4233  PubMed: 32464531 DOI: 10.1016/j.protis.2020.125731 Shiratori, T., Fujita, S., Shimizu, T., Nakayama, T., Ishida, K-I. 2017 Viridiuvalis adhaerens gen. et sp. nov., a novel colony-forming chlorarachniophyte. J. Plant Res., 130, 999–1012. Keywords: Chlorarachniophyceae; Chlorarachniophycota; Phylogeny; Taxonomy; Viridiuvalis adhaerens; Ultrastructure Strain(s): 4109  PubMed: 28642986 DOI: 10.1007/s10265-017-0961-1 Shiratori, T., Ishida, K-I. 2016 Trachyrhizium urniformis n. g., n. sp., a novel marine filose thecate amoeba related to a cercozoan environmental clade (novel Clade 4). J. Eucaryot. Microbiol., 63, 722-731. Keywords: Cercozoa; phylogeny; SSU rRNA gene; Thecofilosea; ultrastructure Strain(s): 3876  PubMed: 27061962 DOI: 10.1111/jeu.12319 Shiratori, T., Suzuki, S., Kakizawa, Y., Ishida, K-I. 2019 Phagocytosis-like cell engulfment by a planctomycete bacterium. Nat. Commun., 10, 5529 (article ID). Strain(s): 2670  PubMed: 31827088 DOI: 10.1038/s41467-019-13499-2 Shiratori, T., Yabuki, A., Ishida, K-I. 2012 Esquamula lacrimiformis n.g., n. sp., a new member of Thaumatomonads that lacks siliceous scales. J. Eucaryot. Microbiol., 59, 527-536. Keywords: Cercozoa; extrusome; microbody; phylogeny; taxonomy; ultrastructure Strain(s): 2745  PubMed: 22742560 DOI: 10.1111/j.1550-7408.2012.00635.x Shirokawa, Y. & Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID). Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution Strain(s): 2364  PubMed: 27807268 DOI: 10.1098/rspb.2016.1632 Shirokawa, Y. & Shimada, M. 2020 Synchronized emergence under diatom sperm competition. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 287, 20201074 (article ID). Keywords: sexual differentiation; evolutionary game theory; synchronization; centric diatom; spem competition Strain(s): 2364  PubMed: 33023410 DOI: 10.1098/rspb.2020.1074 Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253. Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes Strain(s): 2363,  2364,  2365  DOI: 10.1080/09670262.2012.697580 Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503 (article ID). Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system Strain(s): 2364  PubMed: 23760641 DOI: 10.1098/rspb.2013.0503 Shitanda, I., Takada, K., Sakai, Y., Tatsuma, T. 2005 Compact amperometric algal biosensors for the evaluation of water toxicity. Anal. Chim. Acta, 530, 191-197. Keywords: amperometric biosensor; Chlorella vulgaris; algae; alginate gel; polyion complex; herbicides Strain(s): 227  DOI: 10.1016/j.aca.2004.09.073 Shizuka, K., Ikenaga, M., Murase, J., Nakayama, N., Matsuya, N., Kakino, W., Taruya, H., Maie, N. 2020 Diversity of 2-MIB-producing cyanobacteria in Lake Ogawara: microscopic and molecular ecological approaches. Aquacult. Sci., 68, 9-23. Keywords: Pseudanabaena; Amplicon sequencing; Real-time PCR; 2-MIB Strain(s): 4062,  4063,  4237,  4238  DOI: 10.11233/aquaculturesci.68.9 Shoguchi, E., Beedessee, G., Hisata, K., Tada, I., Narisoko, H., Satoh, N., Kawachi, M., Shinzato, C. 2021 A new dinoflagellate genome illuminates a conserved gene cluster involved in sunscreen biosynthesis. Genome Biol. Evol., 13, evaa235 (article ID). Keywords: cyanobacterial bloom; comparative genomics; ecophysiology; genomic complexity; metatranscriptome; Microcystis aeruginosa; adaptation; cyanobacteria; ecogenomics; water blooms Strain(s): 2907  PubMed: 33146374 DOI: 10.1093/gbe/evaa235 Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID). Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis Strain(s): 4076,  4077  PubMed: 29898658 DOI: 10.1186/s12864-018-4857-9 Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244. Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding Strain(s): 3808  PubMed: 26199191 DOI: 10.1093/gbe/evv137 Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408. Strain(s): 3808  PubMed: 23850284 DOI: 10.1016/j.cub.2013.05.062 Shoji, R., Nkayama, H., Sakai, Y., Mohri, S., Yamada, M. 2008 Evaluation of the ecotoxicity of solid wastes using rapid leaching test and bioassays. J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng. , 43, 1048-1053. Keywords: Heavy metals; ecotoxicity; organic compounds; rapid leaching test; bioassays Strain(s): 35  PubMed: 8569319 DOI: 10.1080/10934520802059995 Shono, M., Hara, Y., Wada, M., Fujii, T. 1996 A sodium pump in the plasma membrane of the marine alga Heterosigma akashiwo. Plant Cell Physiol., 37, 385-388. Keywords: Heterosigma akashiwo; marine alga; Na+ transport; Na+-APTase [EC 3.6.1.3]; plasma membrane Strain(s): 6  DOI: 10.1093/oxfordjournals.pcp.a028957 Shono, M., Wada, M., Fujii, T. 1995 Partial purification of a Na+-ATPase from the plasma membrane of the marine alga Heterosigma akashiwo. Plant Physiol., 108, 1615-1621. Strain(s): 6  PubMed: 12228567 DOI: 10.1104/pp.108.4.1615 Silas, S., Makarova, KS., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S.9, Krishnamurthy, SR., Fu, BXH., Hansen, LL., Wang, D., Sullivan, MB., Millard, A., Clokie, MR., Bhaya, D., Lambowitz, AM., Kyrpides, NC., Koonin, EV., Fire, AZ. 2017 On the origin of reverse transcriptase using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires. mBio, 8, e00897-17 (article ID). Keywords: CRISPR; RNA spacer acquisition; cyanobacteria; deep sequencing; horizontal gene transfer; host-parasite relationship; phylogeny; reverse transcriptase Strain(s): 39  PubMed: 28698278 DOI: 10.1128/mBio.00897-17 Simon, A., Glockner, G., Felder, M., Melkonian, M., Becker, B. 2006 EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae). BMC Plant Biol., 6, 2 (article ID). Strain(s): 476  PubMed: 16476162 DOI: 10.1186/1471-2229-6-2 Singh, H. W., Wada, R. M., Sherwood, A. R. 2018 Diurnal patterns of airborne algae in the Hawaiian Islands: a preliminary study. Aerobiologia, 34, 363–373. Keywords: Chlorophyta; Cyanobacteria; Green algae; Trade winds; Universal Plastid Amplicon Strain(s): 3755,  4105  DOI: 10.1007/s10453-018-9519-5 Six, C., Finkel, Z. V., Rodriguez, F., Marie, D., Partensky, F., Campbell, D. A. 2008 Contrasting photoacclimation costs in ectotypes of the marine eukayotic picoplankter Ostreococcus. Limnol. Oceanogr., 53, 255-265. Strain(s): 2674  DOI: 10.4319/lo.2008.53.1.0255 Škaloud, P., Nemjová, K., Veselá, J., Cˇ erná, K., Neustupa,J. 2011 A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists. Mol. Phylogenet. Evol., 61, 933-943. Keywords: Biogeography; Evolution; Micrasterias; Morphology; Phylogeny; Protists Strain(s): 152,  774,  777,  784  PubMed: 21911067 DOI: 10.1016/j.ympev.2011.08.018 Skjelbred, B., Edvardsen, B., Andersen, T. 2012 Environmental optima for seven strains of Pseudochattonella (Dictyochophyceae, Heterokonta). J. Phycol., 49, 54-60. Keywords: compensation irradiance; growth rates; light; loss rates; Pseudochattonella; salinity; saturating irradiance; temperature Strain(s): 670  PubMed: 27008388 DOI: 10.1111/jpy.12008 Skjelbred, B., Horsberg, T. E., Tollefsen, K. E., Andersen, T., Edvardsen, B. 2011 Toxicity of the ichthyotoxic marine flagellate Pseudochattonella (Dictyochophyceae, Heterokonta) assessed by six bioassays. Harmful Algae, 10, 144-154. Keywords: Bioassays; Cytotoxicity assays; Fish exposure; Ichthyotoxicity; Pseudochattonella Strain(s): 670  DOI: 10.1016/j.hal.2010.08.007 Smith, D. R. & Craig, R. J. 2021 Does mitochondrial DNA replication in Chlamydomonas require a reverse transcriptase? New Phytol., 229, 1192-1195. Strain(s): 2212  PubMed: 32936939 DOI: 10.1111/nph.16930 Smith, D. R., Burki, F., Yamada, T., Grimwood, J., Grigoriev, I. V., Van Etten, J. L., Keeling, P. J. 2011 The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One, 6, e23624 (article ID). Strain(s): 2166  PubMed: 21887287 DOI: 10.1371/journal.pone.0023624 Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797. Keywords: Chlamydomonas; Gonium; Pleodorina; Volvox; mitochondrion; chloroplast Strain(s): 1363  PubMed: 23300255 DOI: 10.1093/molbev/mst002 Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384. Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution Strain(s): 763  PubMed: 25017510 DOI: 10.1016/j.ympev.2014.07.001 Smith, D. R., Lee, R. W. 2010 Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol. Biol. Evol., 27, 2244-2256. 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Requirements for carbonic anhydrase induction. Plant Cell Physiol., 24, 301-304. Keywords: carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photosynthesis; photosynthetic mutants Strain(s): 2238  DOI: 10.1093/pcp/24.2.301 Spoof, L. 2004 High-performance liquid chromatography of microcystins and nodularins, cyanobacterial peptide toxins. PhD thesis, Åbo Akademi University, Turku, Finland, 73 pp. Strain(s): 107  Spoof, L., Jaakkola, S., Važić, T., Häggqvist, K., Kirkkala, T., Ventelä, A. M., Kirkkala, T., Svirčev, Z., Meriluoto, J. 2020 Elimination of cyanobacteria and microcystins in irrigation water—effects of hydrogen peroxide treatment. Environ. Sci. Pollut. Res., 27, 8638–8652. 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Strain(s): 4128  PubMed: 5242240 DOI: 10.1073/pnas.59.4.1082 Stawiarski, B., Buitenhuis, ET., Le Quéré, C. 2016 The physiological response of picophytoplankton to temperature and its model representation. Front. Mar. Sci., 3, 164 (article ID). Strain(s): 2588,  2693,  2886  DOI: 10.3389/fmars.2016.00164 Steffen, M. M., Davis, T. W., McKay, R. M. L., Bullerjahn, G. S., Krausfeldt, L. E., Stough, J. M. A., Neitzey, M. L., Gilbert, N. E., Boyer, G. L., Johengen, T. H., Gossiaux, D. C., Burtner, A. M., Palladino, D., Rowe, M. D., Dick, G. J., Meyer, K. A., Levy, S., Boone, B. E., Stumpf, R. P., Wynne, T. T., Zimba, P. V., Gutierrez, D., Wilhelm, S. W. 2017 Ecophysiological Examination of the Lake Erie Microcystis Bloom in 2014: Linkages between Biology and the Water Supply Shutdown of Toledo, OH. Environ. Sci. Technol., 51, 6745–6755. Strain(s): 843  PubMed: 28535339 DOI: 10.1021/acs.est.7b00856 Steffen, M. M., Dearth, S. P., Dill, B. D., Li, Z., Larsen, K. M., Campagna, S. R., Wilhelm, S. W. 2014 Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis. ISME J., 8, 2080-2092. Keywords: cyanobacteria; metabolomics; nitrogen; transcriptomics; transposase; urea Strain(s): 843  PubMed: 24858783 DOI: 10.1038/ismej.2014.78 Steinbrenner, J. & Linden, H. 2001 Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol., 125, 810-817. Strain(s): 144  PubMed: 11161038 DOI: 10.1104/pp.125.2.810 Steinbrenner, J. & Linden, H. 2003 Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol. Biol., 52, 343-356. Keywords: astaxanthin; carotenoid biosynthesis; green algae; Haematococcus pluvialis; lycopene βcyclase; redox regulation Strain(s): 144  PubMed: 12856941 DOI: 10.1023/A:1023948929665 Steinbrenner, J. & Sandmann, G. 2006 Transformation of the green alga Haematococcus pluvialis with a phytoene desaturase for accelerated astaxanthin biosynthesis. Appl. Environ. Microbiol., 72, 7477-7484. Strain(s): 144  PubMed: 17012596 DOI: 10.1128/AEM.01461-06 Štenclová, L. & Fučíková, K. 2019 Dispora speciosa, a new addition to the genus Parallela and the first coccoid member of the family Microsporaceae. Phytotaxa, 419, 10.1016/j.scitotenv.2019.134596 Keywords: 18S rRNA; atpB; epitype; phylogeny; psaB; TEM; rbcL Strain(s): 394  DOI: 10.11646/phytotaxa.419.1.4 Stern, R. F., Horak, A., Andrew, R. L., Coffroth, M.-A., Andersen, R. A., Küpper, F. C., Jameson, I., Hoppenrath, M., Véron, B., Kasai, F., Brand, J., James, E. R., Keeling, P. J. 2010 Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One, 5, e13991 (article ID). Strain(s): 1367  PubMed: 21085582 DOI: 10.1371/journal.pone.0013991 Steudel, B., Hallmann, C., Lorenz, M., Abrahamczyk, S., Prinz, K., Herrfurth, C., Feussner, I., Martini, J. W., Kessler, M. 2016 Contrasting biodiversity–ecosystem functioning relationships in phylogenetic and functional diversity. New Phytol., 212, 409-420. Keywords: algae; allelopathy; biodiversityeffects; chemical compounds; productivity; species richness Strain(s): 4282  PubMed: 27301904 DOI: 10.1111/nph.14054 Steudel, B., Hector, A., Friedl, T., Löfke, C., Lorenz, M., Wesche, M., Kessler, M., Gessner, M. 2012 Biodiversity effects on ecosystem functioning change along environmental stress gradients. Ecol. Lett., 15, 1397-1405. Strain(s): 4282  PubMed: 22943183 DOI: 10.1111/j.1461-0248.2012.01863.x Stockenreiter, M., Graber, A. K., Haupt, F., Stibor, H. 2012 The effect of species diversity on lipid production by micro-algal communities. J. Appl. Phycol., 24, 45-54. Keywords: Biofuel; Complementarity; Diversity; Lipid; Micro-algae; Resource-use efficiency Strain(s): 4282  DOI: 10.1007/s10811-010-9644-1 Stockenreiter, M., Haupt, F., Graber, A. K., Seppälä, J., Spilling, K., Tamminen, T., Stibor, H. 2013 Functional group richness: implications of biodiversity for light use and lipid yield in microalgae. J. Phycol., 49, 838-847. Keywords: Algal neutral lipids; Biofuel; Diversity; Functional groups; Light use; Nile Red; PAR absorbance; Phytoplankton; Resource-use-efficiency; Species richness Strain(s): 4282  PubMed: 27007310 DOI: 10.1111/jpy.12092 Stough, JMA., Tang, X., Krausfeldt, LE., Steffen, MM., Gao, G., Boyer, GL., Wilhelm, SW 2017 Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events. PLoS One, 12, e0184146 (article ID). Strain(s): 843  PubMed: 28873456 DOI: 10.1371/journal.pone.0184146 Su, D., Yang, L., Shi, X., Ma, X., Zhou, X., Hedges, S. B., Zhong, B. 2021 Large-scale phylogenomic analyses reveal the monophyly of bryophytes and Neoproterozoic origin of land plants. Mol. Biol. Evol., 38, 3332–3344. Keywords: Land plants; bryophytes; phylogeny; timescale; maximum bounds Strain(s): 1606,  1611,  1638  PubMed: 33871608 DOI: 10.1093/molbev/msab106 Su, Y., Wang, J., Shi, M., Niu, X., Yu, X., Gao, L., Zhang, X., Chen, L., Zhang, W. 2014 Metabolomic and network analysis of astaxanthin-producing Haematococcus pluvialis under various stress conditions. Bioresour. Technol., 170, 522-529. Keywords: Astaxanthin; Stress; Metabolomics; Metabolic network; Haematococcus pluvialis Strain(s): 144  PubMed: 25164345 DOI: 10.1016/j.biortech.2014.08.018 Suda, K., Tanji, K., Hori, K., Unno, H. 1999 Evidence for a novel Chlorella virus -encoded alginate lyase. FEMS Microbiol. Lett., 180, 45-53. Keywords: Chlorella; virus; alginate lyase; lysis Strain(s): 686,  843,  2170  PubMed: 10547443 DOI: 10.1111/j.1574-6968.1999.tb08776.x Suda, S. 2003 Light microscopy and electron microscopy of Nephroselmis spinosa sp. nov. (Prasinophyceae, Chlorophyta). J. Phycol., 39, 590-599. Keywords: morphology; Nephroselmis spinosa; Prasinophyceae; scale morphology; taxonomy; ultrastructure Strain(s): 934,  935  DOI: 10.1046/j.1529-8817.2003.01194.x Suda, S. & Watanabe, M. M. 1995 Life cycle of Pseudocarteria mucosa (Korschikov) Ettl (Volvocales, Chlorophyta). Phycologia, 34, 58-64. Strain(s): 523  DOI: 10.2216/i0031-8884-34-1-58.1 Suda, S. & Watanabe, M. M. 1995 Notes on microalgae in Japan (2). Hafniomonas montana (Geitler) Ettl et Moestrup (Chlorophyceae, Dunaliellales). Jpn. J. Phycol. (Sôrui), 43, 40-41 (in Japanese with English title). Strain(s): 257  Suda, S., Bhuiyan, M. A. H., Faria, D. G. 2013 Genetic diversity of Pyramimonas from Ryukyu Archipelago, Japan (Chlorophyceae, Pyramimonadales). J. Mar. Sci. Tech., 21, 285-296. Keywords: Pyramimonas; nuclear SSU rDNA; genetic diversity; Ryukyu Archipelago Strain(s): 221,  251,  255,  3392,  3393,  3394,  3396,  3397,  3398,  3399,  3401,  3403,  3405,  3407,  3408,  3411,  3413,  3414,  3416,  3417,  3418  DOI: 10.6119/JMST-013-1220-16 Suda, S., Nozaki, H., Watanabe, M. M. 2005 Morphology and sexual reproduction of Carteria palmata sp. nov. belonging to the Carteria group I sensu Lembi (Chlorophyceae, Volvocales). Phycologia, 44, 596-607. Strain(s): 1336,  1337,  1338  DOI: 10.2216/0031-8884(2005)44[596:MASROC]2.0.CO;2 Suda, S., Watanabe, M. M., Inouye, I. 1989 Evidence for sexual reproduction in the primitive green alga Nephroselmis olivacea (Prasinophyceae). J. Phycol., 25, 596-600. Strain(s): 483,  485  DOI: 10.1111/j.1529-8817.1989.tb00266.x Suda, S., Watanabe, M. M., Inouye, I. 1990 Morphological observations on the rare quadriflagellate Pseudocarteria mucosa (Chlorophyceae, Volvocales). Phycologia, 29, 54-64. Strain(s): 522,  523,  524  DOI: 10.2216/i0031-8884-29-1-54.1 Suda, S., Watanabe, M. M., Inouye, I. 2004 Electron microscopy of sexual reproduction in Nephroselmis olivacea (Prasinophyceae, Chlorophyta). Phycol. Res., 52, 273-283. Keywords: electron microscopy; endoplasmic reticulum; germination; Nephroselmis olivacea; Prasinophyceae; sexual reproduction; zygote formation; zygote wall Strain(s): 483,  485  DOI: 10.1111/j.1440-183.2004.00346.x Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595. Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy Strain(s): 204,  205,  207,  594,  595,  596,  610,  844,  845,  846,  847,  905,  911,  912,  913,  915,  916,  917,  918  PubMed: 12361260 DOI: 10.1099/00207713-52-5-1577 Suda, T., Hata, T., Kawai, S., Okamura, H., Nishida, T. 2012 Treatment of tetracycline antibiotics by laccase in the presence of 1-hydroxybenzotriazole. Bioresour. Technol., 103, 498-501. Keywords: Tetracycline antibiotics; Bacterial growth inhibition; Algal growth inhibition; Laccase; 1-Hydroxybenzotriazole Strain(s): 35  PubMed: 22071243 DOI: 10.1016/j.biortech.2011.10.041 Sudo, R., Tai, S., Yagi, O., Okada, M., Hosomi, M., Yamane, A. N. 1981 Comprehensive studies on the eutrophication of fresh-water areas. Determination of algal growth potential by algal assay procedure. Res. Rep. Natl. Inst. Environ. Stud., No. 26, 1-53 (in Japanese with English title). Strain(s): 35  Sugahara, K., Kobayashi, Y., Watanabe, M. M., Watanabe, M. 1982 Changes in cellular contents of ATP during growth of red tide algae. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 323-327 (in Japanese with English summary). Strain(s): 6  Sugasawa, M., Matsuzaki, R., Arakaki, Y., Nozaki, H. 2015 Morphology and phylogenetic position of a rare four-celled green alga, Pascherina tetras (Volvocales, Chlorophyceae), based on cultured material. Phycologia, 54, 342-348. Keywords: Culture strain; Molecular phylogeny; Morphology; Multicellularity; Spondylomoraceae; Ultrastructure Strain(s): 3749,  3750  DOI: 10.2216/15-27.1 Sugasawa, M., Matsuzaki, R., Kawafune, K., Takahashi, T., Kawachi, M., Krientiz, L., Nozaki, H. 2015 Taxonomic study of Pyrobotrys (Spondylomoraceae, Chlorophyceae) based on comparative morphological and molecular analyses of culture strains established using novel methods. Cytologia, 80, 513-524. Keywords: Molecular phylogeny; Morphology; Pyrobotrys; Pyrobotrys elongata; Spondylomoraceae; Stigma; Taxonomy; Ultrastructure Strain(s): 3768,  3769,  3770,  3771,  3772,  3773,  3774  DOI: 10.1508/cytologia.80.513 Sugawara, K., Fujibayashi, M., Okano, K., Enda, Y., Ichinoseki, S., Taniguchi, Y., Miyata, N. 2021 Assimilation of cyanobacteria by the freshwater bivalve Nodularia douglasiae: Insights from long-term laboratory and field feeding experiments. J. Water Environ. Technol., 19, 74-84. Keywords: filter-feeder; cyanobacterial bloom; dietary utilization; stable isotope; fatty acids Strain(s): 44  DOI: 10.2965/jwet.20-148 Sugaya, Y., Yasuno, M., Yanai, T. 1990 Effects of toxic Microcystis viridis and isolated toxins on goldfish. Jpn. J. Limnol., 51, 149-153. Keywords: fish; hepatotoxin; Microcystis; hemorrhage Strain(s): 102  Sugihara, S., Ozaki, T., Tojo, T., Endo, H., Saito, T., Takimura, Y. 2019 Identification of novel 3-ketoacyl-acyl carrier protein synthase involved in producing medium chain fatty acids from microalgae. Bioresour. Technol. Reports, 7, 100184 (article ID). Keywords: 3-ketoacyl ACP synthase; Medium chain fatty acid; Microalgae; Nannochloropsis Strain(s): 2145  DOI: 10.1016/j.biteb.2019.03.016 Sugiura, N., Iwami, N., Itayama, T., Inamori, Y. 1997 Population dynamics of grazer Monas guttula and prey Microcystis viridis using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 20, 332-337. Keywords: disappearance process; grazer; Microcystis; microflagellate; large scale microcosm Strain(s): 102  Sugiyama, K., Ebisawa, M., Yamada, M., Nagashima, Y., Suzuki, H., Maoka, T., Takaichi, S. 2017 Functional lycopene cyclase (CruA) in cyanobacterium, Arthrospira platensis NIES-39, and its role in carotenoid synthesis. Plant Cell Physiol., 58, 831-838. Keywords: Arthrospira; Carotenoid; Lycopene cyclase; crtR; cruA; β-Carotene hydroxylase Strain(s): 39  PubMed: 28371918 DOI: 10.1093/pcp/pcx015 Sugiyama, K., Takahashi, K., Nakazawa, K., Yamada, M., Kato, S., Shinomura, T., Nagashima, Y., Suzuki, H., Ara, T., Harada, J., Takaichi, S. 2020 Oxygenic phototrophs need ζ-carotene isomerase (Z-ISO) for carotene synthesis: Functional analysis in Arthrospira and Euglena. Plant Cell Physiol., 61, 276–282. Keywords: Arthrospira; CarotenoidEuglena; Oxygenic phototrophs; Z-ISO; ζ-carotene isomerase Strain(s): 39  PubMed: 31593237 DOI: 10.1093/pcp/pcz192 Sugiyama, T., Matsumoto, C., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. VII. Ribulose-1,5-diphosphate carboxylase of Chlorella ellipsoidea. Arch. Biochem. Biophys., 129, 597-602. Strain(s): 2170  PubMed: 4975142 DOI: 10.1016/0003-9861(69)90219-7 Sumiya, N. 2021 Coordination mechanism of cell and cyanelle division in the glaucophyte alga Cyanophora sudae. Protoplasma, 259, 855–867. Keywords: Cyanelle division; Glaucophyte; Cell cycle; Cyanophora Strain(s): 764  PubMed: 34553240 DOI: 10.1007/s00709-021-01704-3 Sumiya, N. , Hirata, A., Kawano, S. 2008 Multiple FtsZ ring formation and reduplicated chloroplast DNA in Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae) under phosphate-enriched culture. J. Phycol., 44, 1476-1489. Keywords: chloroplast division; chloroplast DNA replication; FtsZ ring; Nannochloris bacillaris; phosphate-enriched culture Strain(s): 4016  DOI: 10.1111/j.1529-8817.2008.00589.x Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID). Keywords: chloroplast division; algal cell cycle; Cyanidioschyzon merolae; Cyanophora paradoxa Strain(s): 547,  3377  PubMed: 27837024 DOI: 10.1073/pnas.1612872113 Sumiya, N., Yamazaki, T., Owari, S., Yamamoto, M., Watanabe, K., Kawano, S. 2012 Chloroplast division and differentially regulated expression of FtsZ1 and FtsZ2 in the synchronous culture of Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae). J. Phycol., 77, 59-66. Keywords: Chloroplast division; Nannochloris bacillaris; FtsZ ring formation; FtsZ1; FtsZ2 Strain(s): 4016  DOI: 10.1508/cytologia.77.59 Sun, B.-K., Tanji, Y., Unno, H. 2005 Influences of iron and humic acid on the growth of the cyanobacterium Anabaena circinalis. Biochem. Eng. J., 24, 195-201. Keywords: cyanobacteria; Anabaena circinalis; iron limitation; humic acid Strain(s): 41  DOI: 10.1016/j.bej.2005.02.014 Sun, B.-K., Tanji, Y., Unno, H. 2006 Extinction of cells of cyanobacterium Anabaena circinalis in the presence of humic acid under illumination. Appl. Microbiol. Biotechnol., 72, 823-828. Strain(s): 41  PubMed: 16505991 DOI: 10.1007/s00253-006-0327-4 Sun, H., Wu, T., Chen, H Y., Ren, Y., Yang, S., Huang, J., Mou, H., Chen, F. 2021 Powerful tools for productivity improvements in microalgal production. Renew. Sust. Energ. Rev., 152, 111609 (article ID). Keywords: Microalgal production; Productivity improvement; Kinetic model; Metabolic flux analysis; Genetic tool; Lipid biosynthesis Strain(s): 144,  2140,  2146  DOI: 10.1016/j.rser.2021.111609 Sun, L. W., Jiang, W. J.4, Zhang, J. Y., Wang, W. Q., Du, Y., Sato, H., Kawachi, M., Yu, R. 2018 Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS. Environ. Monit. Assess., 190, 712 (article ID). Keywords: Microcystis aeruginosa; MALDI-TOFMS; Cyanobacterial bloom; Ribosomal protein Strain(s): 206,  230,  843,  1639  PubMed: 30415457 DOI: 10.1007/s10661-018-7093-5 Sun, L., Chin, W. C., Chiu, M. H., Xu, C., Lin, P., Schwehr, K. A., Quigg, A., Santschi, P. H. 2019 Sunlight induced aggregation of dissolved organic matter: Role ofproteins in linking organic carbon and nitrogen cycling in seawater. Sci. Total Environ., 654, 872-877. Keywords: Protein; Photo-flocculation; ROS; DOM Strain(s): 4392  PubMed: 30453257 DOI: 10.1016/j.scitotenv.2018.11.140 Sun, L., Zhang, W., Li, B., Tan, X., Zhang, Z., Hong, W. 2022 Study on treatment of cyanobacterial bloom by UV-C/KMnO4 advanced oxidation. Environ. Resour. Ecol. J., 6, 10-15. Keywords: UV-C/KMnO4; Advanced Oxidation; Cyanobacterial Bloom Strain(s): 843  DOI: 10.23977/erej.2022.060202 Sun, L.W., Jiang, W.J., Sato, H., Kawachi, M., Lu, X.W. 2016 Rapid classification and identification of Microcystis aeruginosa strains using MALDI-TOF MS and polygenetic analysis. PLoS One, 11, e0156275 (article ID). Strain(s): 44,  87,  88,  89,  90,  100,  101,  104,  105,  107,  109,  111,  112,  478,  604,  843,  901,  1043,  1053,  1058,  1061,  1068,  1069,  1070,  1072,  1076,  1077,  1085,  1094,  1099,  1101,  1104,  1105,  1113,  1115,  1126,  1134,  1135,  1144,  1151,  1157,  1170,  1211,  1213,  1215,  1216,  1217,  1218,  1222,  1224,  1230,  1232,  1233,  1239  PubMed: 27227555 DOI: 10.1371/journal.pone.0156275 Sun, P., Cheng, K-W., He, Y., Liu, B., Mao, X., Chen, F. 2018 Screening and identification of inhibitors of advanced glycation endproduct formation from microalgal extracts. Food Funct., 9, 1683-1691. Strain(s): 144  PubMed: 29473927 DOI: 10.1039/C7FO01840A Sung, Y. J., Joun, J., Yu, B. S., Sim, S. J. 2023 Chapter 10 - Photobioreactor systems for production of astaxanthin from microalgae. In Current Developments in Biotechnology and Bioengineering. Photobioreactors : Design and Applications, Sirohi, R., Pandey, A., Sim, S., Chang, J.-S., Lee, D.-J., Elsevier pp. 229-246. Strain(s): 144  DOI: 10.1016/B978-0-323-99911-3.00005-1 Suradkar, A., Villanueva, C., Gaysina, LA., Casamatta, DA., Saraf, A., Dighe, G., Mergu, R., Singh, P. 2017 Nostoc thermotolerans sp. nov., a soil-dwelling species of Nostoc (Cyanobacteria). Int. J. Syst. Evol. Microbiol., 67, 1296-1305. Keywords: cyanobacteria; Taxonomy; Nostoc Strain(s): 21,  40,  50,  3756  PubMed: 28109209 DOI: 10.1099/ijsem.0.001800 Suruzzaman, M., Cao, T., Lu, J., Wang, Y., Su, M., Yang, M. 2022 Evaluation of the MIB-producing potential based on real-time qPCR in drinking water reservoirs. Environ. Res., 204, 112308 (article ID). Keywords: 2-Methylisoborneol (MIB); Taste & odor; Real time qPCR; MIB-Synthesis (mic) gene; Drinking water Strain(s): 512,  4062,  4063,  4237,  4238  PubMed: 34757030 DOI: 10.1016/j.envres.2021.112308 Susanti, H., Yoshida, M., Nakayama, T., Nakada, T., Watanabe, M. M. 2020 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. Phytotaxa, 432, 65-80. Keywords: Taxonomy; reassesment; Chlamydomonas meslinii; Paludistella; Algae Strain(s): 4317,  4318  DOI: 10.11646/phytotaxa.432.1.6 Susilaningsih, D. 2007 Accelerating of pink pigment excretion from cyanobacterium Oscillatoria by Co-Cultivation with Anabaena. HHAYATI J. Biosci., 14, 18-22. Keywords: Oscillatoria; Anabaena variabilis; biosurfactant; cyanobacterium; pink pigment Strain(s): 19,  23,  44,  422  Suzuki, E., Tsuzuki, M., Miyachi, S. 1986 Accumlation of inorganic carbon in the cells of Euglena gracilis Z grown photoautotrophically in ordinary air. Plant Cell Physiol., 27, 1205-1208. Keywords: Euglena gracilis Z; intracellular inorganic carbon accumulation; photosynthesis Strain(s): 48  DOI: 10.1093/oxfordjournals.pcp.a077207 Suzuki, E., Tsuzuki, M., Miyachi, S. 1987 Photosynthetic characteristics of chloroplasts isolated from Euglena gracilis Z grown photoautotrophically. Plant Cell Physiol., 28, 1377-1388. Keywords: carbon dioxide concentration; Euglena gracilis Z; isolated chloroplast; photoautotrophic growth; photosynthetic carbon fixation Strain(s): 48  DOI: 10.1093/oxfordjournals.pcp.a077429 Suzuki, K., Mitra, S., Iwata, O., Ishikawa, T., Kato, S., Yamada, K. 2015 Selection and characterization of Euglena anabaena var. minor as a new candidate Euglena species for industrial application. Biosci. Biotechnol. Biochem., 79, 1730-1736. Keywords: Euglena anabaena var. minor; Euglena gracilis; paramylon Strain(s): 48,  3745  PubMed: 25988946 DOI: 10.1080/09168451.2015.1045828 Suzuki, K., Miyachi, S., Tamiya, H. 1952 Changes of the capacity of dark reduction of carbon dioxide during the normal growth cycle of Chlorella ellipsoidea. In Annual Report of the Research Committee on the Application of Artificial Radioactive Isotopes in Japan, Vol. 2, Part 1, pp. 67-70. Strain(s): 2170  Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017 Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris. J. Appl. Electrochem., 47, 197-203. Keywords: Titanium dioxide; Photocatalyst; Anti-algal effect; Hydrogen peroxide Strain(s): 227  DOI: 10.1007/s10800-016-1031-4 Suzuki, R. & Fujita, Y. 1972 Studies on the Hill reaction of membrane fragments of blue-green algae II. The reaction steps inactivated at high water concentration. Plant Cell Physiol., 13, 427-436. Strain(s): 19,  23  Suzuki, S., Kataoka, T., Watanabe, T., Yamaguchi, H., Kuwata, A., Kawachi, M. 2019 Depth-dependent transcriptomic response of diatoms during spring bloom in the western subarctic Pacifc Ocean. Sci Rep, 9, 14559 (article ID). Strain(s): 4227  PubMed: 31601926 DOI: 10.1038/s41598-019-51150-8 Suzuki, S., Kawachi, M., Tsukakoshi, C., Nakamura, A., Hagino, K., Inouye, I., Ishida, K. 2021 Unstable relationship between Braarudosphaera bigelowii (= Chrysochromulina parkeae) and its nitrogen-fixing endosymbiont. Front. Plant Sci., 12, 749895 (article ID). Keywords: nitrogen fixation; endosymbiosis; haptophyte; UCYN-A; reductive evolution Strain(s): 3865,  4442  PubMed: 34925404 DOI: 10.3389/fpls.2021.749895 Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M. 2022 What happend before losses of photosynthesis in Cryptophyte algae? Mol. Biol. Evol., 39, msac001 (article ID). Keywords: cryptophyte; Cryptomonas borealis: genome evolution; mixotrophy; photosynthetic loss Strain(s): 276,  281,  345,  348,  698,  703,  715,  1005,  1006,  1327,  1375,  1730,  2331,  2332,  2716,  3952  PubMed: 35079797 DOI: 10.1093/molbev/msac001 Suzuki, S., Ota, S., Yamagishi, T., Tuji, A., Yamaguchi, H., Kawachi, M. 2022 Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure. DNA Res., 29, dsac037 (article ID). Keywords: Mayamaea pseudoterrestris; ecotoxicological test; metal toxicity; gliding motility; oxidative stress Strain(s): 4280  PubMed: 36197113 DOI: 10.1093/dnares/dsac037 Suzuki, S., Tazawa, R., Miya, A., Adachi, T., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae. I. Studies on species and culture condition. CELSS J., 7, 23-28 (in Japanese with English summary). Keywords: microalgae; Spirulina; SOT medium; culture condition; CO2/O2 gas exchange system Strain(s): 39,  45,  46  Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol. Resour. Ann.., 8, e00605-19 (article ID). Strain(s): 80,  905,  1949  PubMed: 31649090 DOI: 10.1128/MRA.00605-19 Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 The draft genome of a hydrogen-producing cyanobacterium, Arthrospira platensis NIES-46. J. Genomics, 7, 56-59. Keywords: Arthrospira platensis NIES-46; filamentous cyanobacterium; genome; hydrogen production; phylogeny; Spirulina Strain(s): 46  PubMed: 31588248 DOI: 10.7150/jgen.38149 Suzuki, S., Yamaguchi, H., Kawachi, M. 2022 Potential genetic diversity of Synechococcus-related strains maintained in the Microbial Culture Collection of the National Institute for Environmental Studies, Japan. Microb. Resour. Syst., 38, 63-74. Keywords: Synechococcus; Cyanobium; picoplankton; molecular marker Strain(s): 937,  938,  939,  940,  941,  942,  943,  945,  946,  947,  949,  950,  951,  952,  953,  954,  955,  956,  957,  958,  959,  960,  961,  962,  963,  964,  965,  969,  970,  971,  972,  973,  974,  975,  976,  977,  978,  979,  981,  982,  983,  984,  985,  986,  987,  988,  1341,  1342,  1343,  1344,  1345,  1346,  1347,  1348  Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M. 2018 Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Sci Rep, 8, 8058 (article ID). Strain(s): 35  PubMed: 29795299 DOI: 10.1038/s41598-018-26331-6 Suzuki, T., Ezure, T., Ishida, M. 1998 In-vitro antitumour evaluation of extracts from cyanobacteria Anabaena. J. Pharm. Pharmacol., 50, 136 (Supplement). Strain(s): 19,  2093,  2094  DOI: 10.1111/j.2042-7158.1998.tb02336.x Suzuki, T., Imai, M., Ishida, M. 1997 Influence of environmental factors on phosphorous content in the marine microalga Dunaliella. Toxicol. Environ. Chem., 64, 173-181. Keywords: Dunaliella; photosynthesis; polyphosphates; response surface model Strain(s): 2254,  2257,  2258  DOI: 10.1080/02772249709358547 Suzuki, T., Matsuo, T., Ohtaguchi, K., Koide, K. 1995 Gas-sparged bioreactors for CO2 fixation by Dunaliella tertiolecta. J. Chem. Tech. Biotechnol., 62, 351-358. Strain(s): 2258  DOI: 10.1002/jctb.280620407 Suzuki, T., Nakasato, K., Shapiro, S., Pomati, F., Neilan, B. A. 2004 Effects of synthetic local anaesthetics on the growth of the cyanobacterium Synechococcus leopoliensis. J. Appl. Phycol., 16, 145-152. Keywords: anaesthetics; auxins; cell growth; cyanobacteria; cytokinins; phytohormones; principal component; analysis; Synechococcus leopoliensis Strain(s): 3277  DOI: 10.1023/B:JAPH.0000044776.04977.00 Suzuki, T., Ohtaguchi, K., Koide, K. 1993 Cell growth inhibition in mouse leukemia L5178Y cells in vitro by crude extracts from freshwater blue-green algae. J. Chem. Eng. Japan, 26, 463-464. Strain(s): 2116,  3277  DOI: 10.1252/jcej.26.463 Suzuki, T., Watanabe, R., Uchida, H., Matsushima, R., Nagai, H., Yasumoto, T., Yoshimatsu, T., Sato, S., Adachi, M. 2012 LC-MS/MS analysis of novel ovatoxin isomers in several Ostreopsis strains collected in Japan. Harmful Algae, 20, 81-91. Keywords: Novel ovatoxin isomers; Ostreopsis; Palytoxin analogues; LC-MS/MS Strain(s): 3351  DOI: 10.1016/j.hal.2012.08.002 Suzuki, Y., Johuchi, T., Saijo, H., Takahashi, K., Ashitani, T. 2020 Inhibition of the harmful alga Microcystis aeruginosa by sugi (Cryptomeria japonica) bark. J. Wood Sci., 66, 75 (article ID). Keywords: Woody wastes; Extract; Algal bloom; Allelopathy; Lake environment Strain(s): 87  DOI: 10.1186/s10086-020-01921-z Suzuki, Y., Saijo, H., Takahashi, K., Kofujita, H., Ashitani, T. 2018 Growth-inhibitory components in Sugi (Cryptomeria japonica) extracts active against Microcystis aeruginosa. Cogent Environ. Sci., 4, 1466401 (article ID). Keywords: algal bloom; Japanese cedar; terpenoid; flavonoid, Cyanobacteria Strain(s): 87  DOI: 10.1080/23311843.2018.1466401 Szewczyk, S., Abram, M., Białek, R., Haniewicz, P., Karolczak, J., Gapiński, J., Kargul, J., Gibasiewicz, K. 2020 On the nature of uncoupled chlorophylls in the extremophilic photosystem I-light harvesting I supercomplex. Biochim. Biophys. Acta-Bioenerg., 1861, 148136 (article ID). Keywords: Biosolar photovoltaic cells; Photosystem I; Light harvesting complex I; Uncoupled chlorophylls; Time-resolved fluorescence; Fluorescence correlation spectroscopy Strain(s): 1332  PubMed: 31825811 DOI: 10.1016/j.bbabio.2019.148136 Tabata, K. 1996 Cyanobacteria as teaching materials for inquiring biology [Tankyû katsudô no sozai to shite no shiano-bakuteria]. Iden, 50 (9), 58-62 (in Japanese). Strain(s): 24  Tachibana, H. 1984 Fundamental study on algal growth potential. Proc. Environ. Sanit. Eng. Res., 20, 53-60 (in Japanese). Strain(s): 44  Tachibana, H., Moriguchi, A., Inoue, T., Imaoka, T. 1986 Fundamental study on algal growth potential. II. Utilization of particulate nutrients by algae in river waters. Proc. Environ. Sanit. Eng. Res., 22, 151-161 (in Japanese). Strain(s): 44,  2170  Tachiki, A., Fukuzawa, H., Miyachi, S. 1992 Characterization of carbonic anhydrase isozyme CA2, which is the CAH2 gene product, in Chlamydomonas reinhardtii. Biosci. Biotechnol. Biochem., 56, 794-798. Strain(s): 2235  PubMed: 1368343 DOI: 10.1271/bbb.56.794 Tada, N., Shibata, S., Otsuka, S., Namba, K., Oyaizu, H. 1999 Comparison of gene arrangements of chloroplasts between two centric diatoms, Skeletonema costatum and Odontella sinensis. DNA Seq., 10, 343-347. Keywords: chloroplast; diatom; gene arrangement; Skeletonema costatum Strain(s): 323  PubMed: 10727090 DOI: 10.3109/10425179909033962 Tadama, S. & Shiraishi, H. 2017 Growth of the edible microalga Arthrospira platensis in relation to boron supply. International Journal of GEOMATE, 12, 90-95. Keywords: Cyanobacteria; Spirulina; Arthrospira platensis; Boron, H-resorcinol Strain(s): 39  DOI: 10.21660/2017.30.2580 Tajima, N., Saitoh, K., Sato, S., Maruyama, F., Ichinomiya, M.,Yoshikawa, S., Kurokawa, K., Ohta, H., Tabata, S., Kuwata, A., Sato, N. 2016 Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms). Curr. Genet., 62, 887-896. Keywords: Genome sequencing; Heterokonta; Mitochondrial genome; Parmales; Plastid genome; Triparma laevis Strain(s): 2565  PubMed: 27091756 DOI: 10.1007/s00294-016-0598-y Tajima, N., Sato, S., Maruyama, F., Kurokawa, K., Ohta, H., Tabata, S., Sekine, K., Moriyama, T., Sato, N. 2014 Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum. J. Plant Res., 127, 389-397. Keywords: Genome rearrangement; Plastid genome; Porphyridium purpureum; Rhodophyta; rRNA operon Strain(s): 2140  PubMed: 24595640 DOI: 10.1007/s10265-014-0627-1 Takaaraa, T., Sano, D., Konnob, H., Omura, T. 2007 Cellular proteins of Microcystis aeruginosa inhibiting coagulation with polyaluminum chloride. Water Res., 41, 1653-1658. Keywords: Microcystis aeruginosa; Cyanobacterial proteins; Coagulation; Affinity chromatography; Polyaluminum chloride Strain(s): 91  PubMed: 7353025 DOI: 10.1016/j.watres.2007.01.035 Takaaraa, T., Sano, D., Masago, Y., Omura, T. 2010 Surface-retained organic matter of Microcystis aeruginosa inhibiting coagulation with polyaluminum chloride in drinking water treatment. Water Res., 44, 3781-3786. Keywords: Microcystis aeruginosa;Surface-retained organic matter (SOM); Coagulation inhibition; Polyaluminum chloride (PACl); Lipopolysaccharide (LPS) Strain(s): 91  PubMed: 20570314 DOI: 10.1016/j.watres.2010.04.030 Takaara, T., Sasaki, S., Fujii, M., Ito, H., Masago, Y., Omura, T. 2019 Lectin-stimulated cellular iron uptake and toxin generation in the freshwater cyanobacterium Microcystis aeruginosa. Harmful Algae, 83, 25-33. Keywords: Microcystis aeruginosa; Lectin; Iron uptake; Toxin production; Polysaccharide Strain(s): 478  PubMed: 31097253 DOI: 10.1016/j.hal.2019.01.003 Takabayashi, A., Nishimura, T., Iwamura, T. 1976 Incorporation of radioactive tracers of some labelled compounds into DNA, RNA, and protein in Chlorella cells at various stages of the cell cycle in synchronous culture. J. Gen. Appl. Microbiol., 22, 183-196. Strain(s): 2170  DOI: 10.2323/jgam.22.183 Takada, S., Tanaka, Y., Kumagai, K., Kobayashi, K., Hokura, A., Ogra, Y. 2022 Formation of biogenic tellurium nanorods in unicellular green alga Chlamydomonas reinhardtii. Metallomics, 14, mfac089 (article ID). Keywords: tellurium; biogenic nanorod; Chlamydomonas reinhardtii; single-particle ICP-MS; electron microscopy; bioremediation Strain(s): 2463  PubMed: 36367503 DOI: 10.1093/mtomcs/mfac089 Takagi, T., Aoyama, K., Motone, K., Aburaya, S., Yamashiro, H., Miura, N., Inoue, K. 2023 Mutualistic interactions between dinoflagellates and pigmented bacteria mitigate environmental stress. Microbiol. Spectr., 11, e0246422 (article ID). Strain(s): 4077  PubMed: 36651852 DOI: 10.1128/spectrum.02464-22 Takahara, M., Takahashi, H., Matsunaga, S., Miyagishima, S., Takano, H., Sakai, A., Kawano, S., Kuroiwa, T. 2000 A putative mitochondrial ftsZ gene is present in the unicellular primitive red alga Cyanidioschyzon merolae. Mol. Gen. Genet., 264, 452-460. Keywords: Cyanidioschyzon merolae; ftsZ; Mitochondrial division; Plastid division; Primitive red alga Strain(s): 3377  PubMed: 11129049 DOI: 10.1007/s0043800003 Takahashi, A., Shibata, N., Nishikawa, S., Ohnishi, K., Ishioka, N., Ohnishi, T. 2006 UV-B light induces an adaptive response to UV-C exposure via photoreactivation activity in Euglena gracilis. Photochem. Photobiol. Sci., 5, 467-471. Strain(s): 48  PubMed: 16685323 DOI: 10.1039/b601971d Takahashi, F., Okabe, Y., Nakada, T., Sekimoto, H., Ito, M., Kataoka, H. & Nozaki, H. 2007 Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO. J. Phycol., 43, 1302-1309. Keywords: alanine-X-alanine motif; Chlorarachniophyta; Euglenophyta; phylogeny; plastids; psbO; secondary endosymbiosis; transit peptide; thylakoid-targeting domain Strain(s): 67,  203,  254,  381,  483,  533,  624,  656  DOI: 10.1111/j.1529-8817.2007.00411.x Takahashi, K., Benico, G., Lum, W. M., Iwataki, M. 2019 Gertia stigmatica gen. et sp. nov. (Kareniaceae, Dinophyceae), a new marine unarmored dinoflagellate possessing the peridinin-type chloroplast with an eyespot. Protist, 170, 125680 (article ID). Keywords: Chloroplast; endosymbiosis; eyespot; Gertia stigmatica; Kareniaceae; peridinin Strain(s): 4330  PubMed: 31563792 DOI: 10.1016/j.protis.2019.125680 Takahashi, K., Kawai-Toyooka, H., Ootsuki, R., Hamaji, T., Tsuchikane, Y., Sekimoto, H., Higashiyama, T., Nozaki, H. 2021 Three sex phenotypes in a haploid algal species give insights into the evolutionary transition to a self-compatible mating system. Evolution, 75, 2984-2993. Keywords: Haploid species; inbreeding; life-history evolution; mating systems; reproductive isolation; sex Strain(s): 456,  460,  541,  544,  731,  732,  872,  891,  892,  1362,  1363,  2569,  3382,  3383,  3780,  3782,  4066,  4068,  4479,  4480,  4481,  4482,  4483,  4484  PubMed: 34250602 DOI: 10.1111/evo.14306 Takahashi, K., Moestrup, Ø., Jordan, R. W., Iwataki, M. 2015 Two new freshwater woloszynskioids Asulcocephalium miricentonis gen. et sp. nov. and Leiocephalium pseudosanguineum gen. et sp. nov. (Suessiaceae, Dinophyceae) Lacking an Apical Furrow Apparatus. Protist, 166, 638-658. Keywords: Apical furrow; dinoflagellate; eyespot; Asulcocephalium miricentonis; Leiocephalium pseudosanguineum; Suessiaceae Strain(s): 3775,  3776,  3777  PubMed: 26599726 DOI: 10.1016/j.protis.2015.10.003 Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in Pleodorina starrii. Commun. Biol., 6, 590 (article ID). Strain(s): 1363,  4479,  4480,  4481,  4482  PubMed: 37296191 DOI: 10.1038/s42003-023-04949-1 Takahashi, S., Tomita, M., Nakada, T. 2018 Morphology and phylogeny of a Japanese strain of Chlamydomonas augustae (Volvocales, Chlorophyceae). J. Jpn. Bot., 93, 317-321. Keywords: Chlamydomonas; Chloromonas; Chlorophyceae; culture strain; distribution; Japan; phylogeny; taxonomy Strain(s): 4143  Takahashi, T., Nishida, T., Tuji, A., Saito, C., Matsuzaki, R., Sato, M., Toyooka, K., Yasuda, H., Nozaki, H. 2016 Delineation of six species of the primitive algal genus Glaucocystis based on in situ ultrastructural characteristics. Sci. Rep., 6, 29209 (article ID). Strain(s): 966,  1369,  1961,  2141,  3866,  3867,  3868  PubMed: 27383831 DOI: 10.1038/srep29209 Takahashi, T., Sato, M., Toyooka, K., Matsuzaki, R., Kawafune, K., Kawamura, M., Okuda,K., Nozaki, H. 2014 Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J. Phycol., 50, 1058-1069. Keywords: Cyanophora; field-emission scanning electron microscopy; freeze-fracture method; Glaucophyta; molecular phylogeny; morphology; new species; secondary structure of nuclear rDNA ITS-2; taxonomy; ultrastructure Strain(s): 547,  763,  764,  3645  PubMed: 26988787 DOI: 10.1111/jpy.12236 Takahashi, T., Sato, M., Toyooka, K., Nozaki, H. 2014 Surface ornamentation of Cyanophora paradoxa (Cyanophorales, Glaucophyta) cells as revealed by ultra-high resolution field emission scanning electron microscopy. Cytologia, 79, 119-123. Keywords: Cyanophora paradoxa; Glaucophyta; Peripheral morphology; Field emission scanning electron microscopy; Transmission electron microscopy Strain(s): 547  DOI: 10.1508/cytologia.79.119 Takahashi, Y., Shimamoto, K., Toyokawa, C., Suzuki, K., Osanai, T. 2023 Gravity sedimentation of eukaryotic algae Euglena gracilis accelerated by ethanol cultivation. Appl. Microbiol. Biotechnol., 107, 3021–3032. Keywords: Ethanol; Euglena gracilis; Microalgae; Sedimentation Strain(s): 48  PubMed: 36941437 DOI: 10.1007/s00253-023-12476-6 Takahashi, Y., Yoshida, M., Inouye, I., Watanabe, M. M. 2014 Diplophrys mutabilis sp. nov., a new member of Labyrinthulomycetes from freshwater habitats. Protist, 165, 50-65. Keywords: Amphitremida; Diplophrys mutabilis; lipid body; phylogeny; ultrastructure Strain(s): 3361  PubMed: 24334197 DOI: 10.1016/j.protis.2013.10.001 Takaichi, S. 2011 Carotenoids in algae: distributions, biosyntheses and functions. Mar. Drugs, 9, 1101-1118. Keywords: algal phylogeny; biosynthesis of carotenoids; distribution of carotenoids; function of carotenoids; pigment-protein complex Strain(s): 144,  1332,  3377  PubMed: 21747749 DOI: 10.3390/md9061101 Takaichi, S., Maoka, T., Mochimaru, M. 2009 Unique carotenoids in the terrestrial cyanobacterium Nostoc commune NIES-24: 2-hydroxymyxol 2'-fucoside, nostoxanthin and canthaxanthin. Curr. Microbiol., 59, 413-419. Strain(s): 24  PubMed: 19669835 DOI: 10.1007/s00284-009-9453-4 Takaichi, S., Mochimaru, M., Maoka, T., Katoh, H. 2005 Myxol and 4-ketomyxol 2'-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids. Plant Cell Physiol., 46, 497-504. Keywords: Anabaena; carotenogenesis; carotenoid; 4-ketomyxol 2'-fucoside; Nostoc Strain(s): 2109,  2110,  2111  PubMed: 15695449 DOI: 10.1093/pcp/pci049 Takaichi, S., Yokoyama, A., Mochimaru, M., Uchida, H., Murakami, A. 2016 Carotenogenesis diversification in phylogenetic lineages of Rhodophyta. J. Phycol., 52, 329-338. Keywords: alloxanthin; antheraxanthin; carotenogenesis; carotenoid; Cryptophyta; Glaucophyta; lutein; red algae; Rhodophyta; Zeaxanthin Strain(s): 697,  700,  705,  1332,  2137,  2138  PubMed: 27273528 DOI: 10.1111/jpy.12411 Takaichi., S., Mochimaru, M., Maoka, T. 2006 Presense of free myxol and 4-hydroxymyxol and absense of myxol glycosides in Anabaena variabilis ATCC 29413, and proposal of a biosynthetic pathway of carotenoids. Plant Cell Physiol., 47, 211-216. Keywords: Anabaena variabilis ATCC 29413; carotenogenesis; carotenoid; 4-hydroxymyxol; myxol Strain(s): 2095  PubMed: 16338959 DOI: 10.1093/pcp/pci236 Takamura, N., Kasai, F., Watanabe, M. M. 1988 Differences in the tolerant level of benthic algae to heavy metal - The effects of Cu, Cd, and Zn on the photosynthesis. Res. Rep. Natl. Inst. Environ. Stud., No. 114, 223-232 (in Japanese with English summary). Strain(s): 71,  305,  329,  411,  412,  413,  434,  504,  531,  538,  641,  642,  662  Takamura, N., Kasai, F., Watanabe, M. M. 1989 Effects of Cu, Cd and Zn on photosynthesis of freshwater benthic algae. J. Appl. Phycol., 1, 39-52. Keywords: heavy metal; photosynthesis; algae; tolerance Strain(s): 71,  305,  329,  407,  408,  409,  410,  411,  412,  413,  414,  416,  433,  434,  454,  461,  465,  466,  467,  479,  481,  487,  503,  504,  505,  506,  507,  509,  510,  515,  529,  530,  531,  532,  536,  537,  538,  539,  540,  620,  639,  640,  641,  642,  659,  660,  661,  662  Takamura, N., Kasai, F., Watanabe, M. M. 1990 Unique response of Cyanophyceae to copper. J. Appl. Phycol., 2, 293-296. Keywords: heavy metal; photosynthesis; periphyton; tolerance; Cyanophyceae; genetic adaptation Strain(s): 433,  434,  479,  504,  505,  507,  509,  515,  530  DOI: 10.1007/BF02180917 Takamura, Y., Yamada, T., Kimoto, A., Kanehama, N., Tanaka, T., Nakadaira, S., Yagi, O. 2004 Growth inhibiton of Microcystis cyanobacteria by L-lysine and disappearance of natural Microcystis blooms with spraying. Microbes Environ., 19, 31-39. Keywords: Microcystis cyanobacteria; L-lysine; growth inhibition; water bloom; Euglena; Phormidium Strain(s): 102  DOI: 10.1264/jsme2.19.31 Takanami, R., Ozaki, H., Hayashi, S., Yamada, O., Sumino, T. 2004 Algal growth control with mud gels and silver-contained ceramics. Environ. Eng. Res., 41, 429-436 (in Japanese with English summary). Keywords: algal bloom; mud gels; silver-contained ceramics Strain(s): 298  Takano, H., Tsunefuka, T., Takio, S., Ishikawa, H., Takechi, K. 2018 Visualization of plastid peptidoglycan in the charophyte alga Klebsormidium nitens using a metabolic labeling method. Cytologia, 83, 375-380. Keywords: charophyte; Evolution; Klebsormidium nitens; Plastid peptidoglycan; Streptophyte Strain(s): 2285  DOI: 10.1508/cytologia.83.375 Takano, T., Higuchi, S., Ikegaya ,H., Matsuzaki, R., Kawachi, M., Takahashi, F., Nozaki, H. 2019 Identification of 13 Spirogyra species (Zygnemataceae) by traits of sexual reproduction induced under laboratory culture conditions. Sci Rep, 9, 7458 (article ID). Strain(s): 4302,  4303,  4304,  4305,  4306,  4307,  4308,  4309,  4310,  4311,  4312,  4313,  4314,  4315,  4316  PubMed: 31123266 DOI: 10.1038/s41598-019-43454-6 Takeda, F., Minamiyama, M., Okamoto, S. 2017 Seasonal variation in ability of wastewater treatment for reduction in biological effects evaluated based on algal growth. J. Water Environ. Technol., 15, 96-105. Keywords: pollutant release and transfer register (PRTR) information; Pseudokirchneriella subcapitata; toxicity identification evaluation (TIE); wastewater treatment; whole effluent toxicity (WET) Strain(s): 35  DOI: 10.2965/jwet.16-051 Takeda, F., Nakano, K., Aikawa, Y., Nishimura, O., Shimada, Y., Fukuro, S., Tanaka, H., Hayashi, N. Inamori, Y. 2011 Allelopathic potential against Microcystis aeruginosa by emergent macrophytes on floating beds. J. Water Environ. Technol., 9, 371-380. Keywords: allelopathy; Carex dispalata; floating bed; Microcystis aeruginosa; Phragmites australis; Typha domingensis Strain(s): 87  DOI: 10.2965/jwet.2011.371 Takeda, F., Nakano, K., Nishimura, O., Shimada, Y., Fukuro, S., Tanaka, H., Hayashi, N. Inamori, Y. 2011 Allelopathic potential Potamogeton pusillus communitya against Microcystis aeruginosa. J. Water Environ. Technol., 9, 21-28. Keywords: allelopathy; Microcystis aeruginosa; Potamogeton pusillus Strain(s): 87  DOI: 10.2965/jwet.2011.21 Takeda, F., Sakamaki, T., Xu, K., Chiba, N., Nishimura, O., Sudo, R. 2003 Effect of potential allelochemicals extracted from Sargassum horneri on the growth of red tide microalgae. J. Environ. Syst. and Eng., JSCE, VII-29, 25-32. Keywords: Sargassum horneri; red tide microalgae; growth inhibition; allelochemicals Strain(s): 1,  16,  293  DOI: 10.2208/jscej.2003.748_25 Takeda, H. 1988 Classification of Chlorella strains by cell wall sugar composition. Phytochemistry, 27, 3823-3826. Keywords: Chlorella ellipsoidea; C. fusca; C. kessleri; C. saccharophila; C. sorokiniana; C. vulgaris; Chlorophyta; anisotropy; cell wall sugar composition; chemotaxonomy; Ruthenium Red staining Strain(s): 226,  2150,  2160,  2170  DOI: 10.1016/0031-9422(88)83025-5 Takeda, H. 1991 Sugar composition of the cell wall and the taxonomy of Chlorella (Chlorophyceae). J. Phycol., 27, 224-232. Keywords: anisotropy; cell wall sugar composition; chemotaxonomy; Chlorella; Chlorophyta; classification; glucosamine; rigid wall; ruthenium red staining Strain(s): 2160,  2170  DOI: 10.1111/j.0022-3646.1991.00224.x Takeda, H. 1993 Chemical composition of cell walls as a taxonomical marker. J. Plant Res., 106, 195-200. Keywords: anisotropy; cell wall sugar composition; chemotaxonomy; Chlorella; classification; lytic enzyme; rigid wall; ruthenium red Strain(s): 2160,  2170  DOI: 10.1007/BF02344585 Takeda, H. & Hirokawa, T. 1978 Studies on the cell wall of Chlorella. I. Quantitative changes in cell wall polysaccharides during the cell cycle of Chlorella ellipsoidea. Plant Cell Physiol., 19, 591-598. Keywords: cell cycle; cell wall polysaccharides; Chlorella Strain(s): 2170  Takeda, H. & Hirokawa, T. 1979 Studies on the cell wall of Chlorella. II. Mode of increase of glucosamine in the cell wall during the synchronous growth of Chlorella ellipsoidea. Plant Cell Physiol., 20, 989-991. Keywords: cell cycle; cell wall; Chlorella; glucosamine; synchronous culture Strain(s): 2170  Takeda, H. & Hirokawa, T. 1982 Studies on the cell wall of Chlorella. III. Incorporation of photosynthetically fixed carbon into cell walls of synchronously growing cells of Chlorella ellipsoidea. Plant Cell Physiol., 23, 1033-1040. Keywords: cell cycle; cell wall polysaccharides; cell wall turnover; Chlorella ellipsoidea; photosynthesis; synchronous culture Strain(s): 2170  Takeda, H. & Hirokawa, T. 1983 Studies on the cell walls of Chlorella. IV. Incorporation of glucose-carbon into cell walls of synchronously growing cell of Chlorella ellipsoidea. Plant Cell Physiol., 24, 1157-1161. Keywords: cell cycle; cell wall synthesis; Chlorella ellipsoidea; glucose uptake; synchronous culture Strain(s): 2170  Takeda, H. & Hirokawa, T. 1984 Studies on the cell wall of Chlorella. V. Comparison of the cell wall chemical compositions in strains of Chlorella ellipsoidea. Plant Cell Physiol., 25, 287-295. Keywords: cell wall amino compounds; cell wall composition; cell wall polysaccharides; Chlorella cell wall; Chlorella ellipsoidea; strain identification Strain(s): 2170  Takeda, H. & Hirokawa, T. 1985 Cell-wall chemistry, structure and components. In Modern Methods of Plant Analysis, New Series Vol. 1, Eds. by Linskens, H. F. & Jackson, J. F., Springer-Verlag, Berlin, pp. 31-53. Strain(s): 2170  Takei, T., Odake, H., Miura, K., Takagi, Y. 2006 Ecotoxicity of tetradecanoic acid, 2-sulfo-, 1-metylester, sodium salt (C14MES). J. Oleo Sci., 55, 121-126. Keywords: MES; ecotoxicity; alga; daphnia; reproduction Strain(s): 35  DOI: 10.5650/jos.55.121 Takenaka, S., Yoshikawa, T., Kadowaki, S., Okunishi, S., Maeda, H. 2017 Microflora in the soft Ttissue of the pacific oyster Crassostrea gigas exposed to the harmful microalga Heterosigma akashiwo. Biocontrol Science, 22, 79-87. Keywords: Pacific oyster; Heterosigma akashiwo; Filtraion rate; Intestinal microflora Strain(s): 5  PubMed: 28659559 DOI: 10.4265/bio.22.79 Takeshita, T., Ivanov, I. N., Oshima, K., Ishii, K., Kawamoto, H., Ota, S., Yamazaki, T., Hirata, A., Kazama, Y., Abe, T., Hattori, M., Bišová,K., Zachleder, V., Kawano, S. 2018 Comparison of lipid productivity of Parachlorella kessleri heavy-ion beam irradiation mutant PK4 in laboratory and 150-L mass bioreactor, identification and characterization of its genetic variation. Algal Res., 35, 416-426. Keywords: Parachlorella kessleri; Nutrient dilution; 150-L mass cultivation; Whole genome sequencing; Mutation identification; Single-nucleotide polymorphism Strain(s): 2152  DOI: 10.1016/j.algal.2018.09.005 Takeshita, T., Ota, S., Yamazaki, T., Hirata, A., Zachleder, V., Kawano, S. 2014 Starch and lipid accumulation in eight strains of six Chlorella species under comparatively high light intensity and aeration culture conditions. Bioresour. Technol., 158, 127-134. Keywords: Accumulation shift; Lipid; Chlorella; Starch; Strong light Strain(s): 2151,  2152,  2159,  2169,  2170,  2179  PubMed: 24583913 DOI: 10.1016/j.biortech.2014.01.135 Takeshita, T., Takeda,K., Ota, S., Yamazaki, T., Kawano, S. 2015 A simple method for measuring the starch and lipid contents in the cell of microalgae. Cytologia, 80, 475-481. Keywords: Chlorella; Starch; Lipid; Microplate; Trade-off Strain(s): 2152  DOI: 10.1508/cytologia.80.475 Takeuchi, A., Katsumata, M., Koike, T., Takata, Y., Itatsu, Y., Kusui, T. 2014 Comparison of the conventional algal growth inhibition tests using cell counting and algal bioassay using delayed fluorescence: application to industrial effluents. J. Water Environ. Technol., 12, 367-377. Keywords: algal growth inhibition test; delayed fluorescence; rapid bioassay; whole effluent toxixity Strain(s): 35  DOI: 10.2965/jwet.2014.367 Takeya, M., Hirai, M. Y., Osanai, T. 2017 Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid eesidue in cyanobacteria. Sci Rep., 7, 41080 (article ID). Strain(s): 3756  PubMed: 28117365 DOI: 10.1038/srep41080 Takishita, K. & Uchida, A. 1999 Molecular cloning and nucleotide sequence analysis of psbA from the dinoflagellates: origin of the dinoflagellate plastid. Phycol. Res., 47, 207-216. Keywords: D1; dinoflagellate; phylogenetic analysis; plastid; psbA Strain(s): 12,  331  DOI: 10.1046/j.1440-1835.1999.00163.x Takishita, K., Ishida, K-I., Ishikura, M., Maruyama, T. 2005 Phylogeny of the psbC gene, coding a photosystem II component CP43, suggests separate origins for the peridinin- and fucoxanthin derivativee–containing plastids of dinoflagellates. Phycologia, 44, 26-34. Strain(s): 218,  331  DOI: 10.2216/0031-8884(2005)44[26:POTPGC]2.0.CO;2 Takishita, K., Ishida, K-I., Maruyama, T. 2003 An enigmatic GAPDH gene in the symbiotic dinoflagellate genus Symbiodinium and its related species (the Order Suessiales): possible lateral gene transfer between two eukaryotic algae, dinoflagellate and euglenophyte. Protist, 154, 443-454. Strain(s): 613  PubMed: 14658500 DOI: 10.1078/143446103322454176 Takishita, K., Koike, K., Maruyama, T., Ogata, T. 2002 Molecular evidence for plastid robbery (kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning. Protist, 153, 293-302. Strain(s): 274,  715  PubMed: 12389818 DOI: 10.1078/1434-4610-00106 Takishita, K., Kolisko, M., Komatsuzaki, H., Yubuki, N., Inagaki, Y., Cepicka, I., Smejkalová, P., Silberman, J. D., Hashimoto, T., Roger, A. J., Simpson, A. G. B. 2012 Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of ‘amitochondriate’ diplomonads and retortamonads. Protist, 163, 344-355. Keywords: Carpediemonas-like organisms; diplomonads; Excavata; hydrogenosomes; mitochondria; mitosomes Strain(s): 1968  PubMed: 22364773 DOI: 10.1016/j.protis.2011.12.007 Takishita, K., Yamaguchi, H., Maruyama, T., Inagaki, Y. 2009 A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3 phosphate dehydrogenase genes in "chromalveolate" members. PLoS One, 4, e4737 (article ID). Strain(s): 15,  275,  706,  716  PubMed: 19270733 DOI: 10.1371/journal.pone.0004737 Takishita, K., Yubuki, N., Kakizoe, N., Inagaki, Y., Maruyama, T. 2007 Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles, 11, 563–576. Keywords: Cultivation; Diversity; Methane seep; Microbial eukaryotes; SSU rDNA Strain(s): 1968  PubMed: 17426921 DOI: 10.1007/s00792-007-0068-z Tamaki, S., Koshitsuka, Y., Miyamoto, K., Ishikawa, T., Shinomura, T. 2023 Chemical and genetic carotenoid deficiency delays growth in dark-grown Euglena gracilis. Biosci. Biotechnol. Biochem., 87, 491-500. Keywords: Euglena gracilis; carotenoid; norflurazon; dark acclimation; posttranscriptional regulation Strain(s): 48  PubMed: 36869792 DOI: 10.1093/bbb/zbad024 Tamamizu, K. & Kumazaki, S. 2019 Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation. Biochim. Biophys. Acta-Bioenerg., 1860, 78-88. Keywords: Heterocystous cyanobacteria; Raman scattering microscopy; Anabaena variabilis; Rivularia; Photosystems; Thylakoid membranes Strain(s): 2095,  2160  PubMed: 30414930 DOI: 10.1016/j.bbabio.2018.11.012 Tamaru, Y., Takani, Y., Yoshida, T., Sakamoto, T. 2005 Crucial role of extracellular polysaccharides in desiccation and freezing tolerance in the terrestrial cyanobacterium Nostoc commune. Appl. Environ. Microbiol., 71, 7327-7333. Strain(s): 2538  PubMed: 16269775 DOI: 10.1128/AEM.71.11.7327-7333.2005 Tamiya, H. 1951 An additional note on the kinetics of algal growth. Bot. Mag. Tokyo, 64, 216-218. Strain(s): 2170  Tamiya, H. 1957 Mass culture of algae. Ann. Rev. Plant Physiol., 8, 309-334. Strain(s): 2170  Tamiya, H. 1963 Cell differentiation in Chlorella. In Cell Differentiation: Symposium of the Society for Experimental Biology, XVII, pp. 188-214. Strain(s): 48,  2170  Tamiya, H. 1963 Control of cell division in microalgae. J. Cell & Comp. Physiol., 62, 157-174. Strain(s): 2170  Tamiya, H. 1964 Growth and cell division of Chlorella. In Synchrony in Cell Division and Growth, Ed. by Zeuthen, E., John Wiley & Sons, New York, pp. 247-305. Strain(s): 2170  Tamiya, H. 1966 Synchronous cultures of algae. Ann. Rev. Plant Physiol., 17, 1-26. Strain(s): 2170  Tamiya, H. & Chiba, Y. 1949 Analysis of photosynthetic methanism by the method of intermittent illumination. I. Experimental part. Studies from the Tokugawa Institute, Vol.6, No.2, 1-42. Strain(s): 2170  Tamiya, H. & Morimura, Y. 1964 Synchronous culture of Chlorella starting from a homogeneous population. In Synchrony in Cell Division and Growth, Ed. by Zeuthen, E., John Wiley & Sons, New York, pp. 565-569. Strain(s): 2170  Tamiya, H., Hase, E., Shibata, K., Mitsuya, A., Iwamura, T., Nihei, T., Sasa, T. 1953 Kinetics of growth of Chlorella, with special reference to its dependence on quantity of available light and on temperature. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 204-232. Strain(s): 2170  Tamiya, H., Iwamura, T., Shibata, K., Hase, E., Nihei, T. 1953 Correlation between photosynthesis and light-independent metabolism in the growth of Chlorella. Biochim. Biophys. Acta, Spec. Iss. (Cell Chemistry, Festschr. for Otto Warburg) 12, 23-40. Strain(s): 2170  PubMed: 13115410 DOI: 10.1016/0006-3002(53)90120-6 Tamiya, H., Miyachi, S., Hirokawa, T. 1957 Some new preillumination experiments with carbon-14. In Research in Photosynthesis, Eds. by Gaffron, H. et al., Intersc. Publ. Inc., New York, pp. 213-223. Strain(s): 2170  Tamiya, H., Miyachi, S., Hirokawa, T., Katoh, T. 1958 Effect of some poisons upon the mechanism of photosynthesis as studied by the technique of "pre-illumination" using C14 as a tracer. In Radioisotopes in Scientific Research. Vol. 4. Research with Radioisotopes in Plant Biology and Some General Problems, Ed. by Extermann, R. C., Pergamon Press, London, pp.1-15. Strain(s): 2170  Tamiya, H., Morimura, Y., Yokota, M. 1962 Effects of various anti-metabolites upon the life cycle of Chlorella. Arch. Mikrobiol., 42, 4-16. Strain(s): 2170  DOI: 10.1007/BF00425184 Tamiya, H., Morimura, Y., Yokota, M., Kunieda, R. 1961 Mode of nuclear division in synchronous cultures of Chlorella: Comparison of various methods of synchronization. Plant Cell Physiol., 2, 383-403. Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a077694 Tamiya, H., Sasa, T., Nihei, T., Ishibashi, S. 1955 Effect of variation of day-length, day and night-temperature, and intensity of daylight upon the growth of Chlorella. J. Gen. Appl. Microbiol., 1, 298-307. Strain(s): 2170  DOI: 10.2323/jgam.1.298 Tamiya, H., Shibata, K., Sasa, T., Iwamura, T., Morimura, Y. 1953 Effect of diurnally intermittent illumination on the growth and some cellular characteristics of Chlorella. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 78-84. Strain(s): 2170  Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775. Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation Strain(s): 21,  23,  25,  26,  267,  2108,  2111,  3756,  4073,  4074,  4075,  4103  PubMed: 35851984 DOI: 10.1111/gbi.12514 Tamura, I., Kagota, K., Yasuda, Y., Yoneda, S., Morita, J., Nakada, N., Kameda, Y., Kimura, K., Tatarazako, N., Yamamoto, H. 2013 Ecotoxicity and screening level ecotoxicological risk assessment of five antimicrobial agents: triclosan, triclocarban, resorcinol, phenoxyethanol and p-thymol. J. Appl. Toxicol., 33, 1222-1229 Keywords: antimicrobial agents; triclosan; triclocarban; phenoxyethanol; ecotoxicity; green algae; Ceriodaphnia dubia; ecological risk Strain(s): 35  PubMed: 2806922 DOI: 10.1002/jat.2771 Tamura, I., Yasuda, Y., Kagota, K., Yoneda, S., Nakada, N., Vimal Kumar, V., Yutaka Kameda, Y., Kumiko Kimura, K., Norihisa Tatarazako, N., Hiroshi Yamamoto, H. 2017 Contribution of pharmaceuticals and personal care products (PPCPs) to whole toxicity of water samples collected in effluent-dominated urban streams. Ecotox. Environ. Safe., 144, 338-350. Keywords: PPCPs; Anionic surfactant; Whole toxicity; Bioassay Strain(s): 35  PubMed: 28646739 DOI: 10.1016/j.ecoenv.2017.06.032 Tan, S. & Ho, K.-K. 1989 Purification of an acidic plastocyanin from Microcystis aeruginosa. Biochim. Biophys. Acta, 973, 111-117. Keywords: plastocyanin; cytochrome c-553; absorption chromatography; cyanobacteria; photosynthesis Strain(s): 44  PubMed: 2537099 DOI: 10.1016/S0005-2728(89)80410-4 Tan, X., Zhu, J., Wakisaka, M. 2021 Effect of phytochemical vanillic acid on the growth and lipid accumulation of freshwater microalga Euglena gracilis. World J. Microbiol. Biotechnol., 37, 217 (article ID). Keywords: Euglena gracilis; Vanillic acid; Growth; Photosynthetic pigments; Biochemical composition Strain(s): 48  PubMed: 34773155 DOI: 10.1007/s11274-021-03185-1 Tanabe, Y. 2010 "Biological species recognition" within the toxic cyanobacterium Microcystis. IFO Res. Commun., 24, 69-79 (in Japanese with English summary). Keywords: Microcystis; MLST; microcystin synthetase; recombination; biological species recognition Strain(s): 2465,  2466,  2467,  2468,  2469,  2470,  2471,  2472,  2473,  2474,  2475,  2476,  2477,  2478,  2479,  2480,  2481,  2482,  2483,  2484,  2485,  2486,  2487,  2488,  2489,  2490,  2491,  2492,  2493,  2494,  2495,  2496,  2542,  2543,  2544,  2545,  2546,  2547,  2548,  2549,  2550,  2551,  2552,  2553,  2554,  2555,  2556,  2557,  2558,  2559,  2560,  2561,  2591,  2592,  2593,  2594,  2595,  2596,  2597,  2598,  2599,  2600,  2601,  2602,  2603,  2604,  2605,  2606,  2607,  2608,  2609,  2610,  2611,  2612,  2613,  2617,  2618,  2619,  2620,  2621,  2622,  2623,  2624,  2625,  2626,  2627,  2628,  2629  Tanabe, Y. & Watanabe, M. M. 2011 Local expansion of a panmictic lineage of water bloom-forming cyanobacterium Microcystis aeruginosa. PLoS One, 6, e17085 (article ID). Strain(s): 44,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  103,  104,  105,  106,  107,  108,  109,  110,  111,  112,  298,  299,  478,  604,  843,  901,  1050,  1051,  1052,  1053,  1054,  1055,  1056,  1057,  1058,  1059,  1060,  1061,  1062,  1063,  1064,  1065,  1066,  1067,  1068,  1069,  1070,  1072,  1075,  1076,  1077,  1085,  1090,  1091,  1092,  1093,  1094,  1095,  1096,  1097,  1098,  1100,  1101,  1102,  1103,  1104,  1105,  1106,  1107,  1108,  1113,  1114,  1115,  1122,  1123,  1124,  1125,  1126,  1127,  1128,  1129,  1130,  1131,  1132,  1133,  1134,  1135,  1136,  1137,  1138,  1139,  1140,  1141,  1142,  1143,  1144,  1145,  1146,  1147,  1148,  1149,  1150,  1151,  1152,  1153,  1155,  1156,  1157,  1159,  1160,  1161,  1162,  1163,  1164,  1170,  1171,  1172,  1173,  1174,  1175,  1176,  1177,  1179,  1180,  1181,  1183,  1184,  1185,  1186,  1209,  1211,  1213,  1214,  1215,  1216,  1217,  1218,  1219,  1220,  1221,  1222,  1223,  1224,  1225,  1226,  1227,  1228,  1229,  1230,  1231,  1232,  1233,  1234,  1235,  1236,  1237,  1238,  1239,  1240,  1241,  1242,  1243,  1244,  1245,  1251,  1252,  1253,  1254,  2088,  2089,  2090,  2091,  2465,  2466,  2467,  2468,  2469,  2470,  2471,  2472,  2473,  2474,  2475,  2476,  2477,  2478,  2479,  2480,  2481,  2482,  2483,  2484,  2485,  2486,  2487,  2488,  2489,  2490,  2491,  2492,  2493,  2494,  2495,  2496,  2542,  2543,  2544,  2545,  2546,  2547,  2548,  2549,  2550,  2551,  2552,  2553,  2554,  2555,  2556,  2557,  2558,  2559,  2560,  2561,  2591,  2592,  2593,  2594,  2595,  2596,  2597,  2598,  2599,  2600,  2601,  2602,  2603,  2604,  2605,  2606,  2607,  2608,  2609,  2610,  2611,  2612,  2613,  2617,  2618,  2619,  2620,  2621,  2622,  2623,  2624,  2625,  2626,  2627,  2628,  2629  PubMed: 21390221 DOI: 10.1371/journal.pone.0017085 Tanabe, Y.. & Yamaguchi, H. 2018b Evolutionary history of phycoerythrin pigmentation in the water bloom-forming cyanobacterium Microcystis aeruginosa. bioRXiv Strain(s): 1211,  4234  DOI: 10.1101/485508 Tanabe, Y. & Yamaguchi, H. 2019 Draft genome sequence of Microcystis aeruginosa NIES-4285, isolated from brackish water (Lake Abashiri, Japan). Microbiol. Resour. Ann.., 8, e00001-19 (article ID). Strain(s): 4285  PubMed: 30746511 DOI: 10.1128/MRA.00001-19 Tanabe, Y., Hasebe, M., Sekimoto, H., Nishiyama, T., Kitani, M., Henschel, K., Münster, T., Theißen, G., Nozaki, H., Ito, M. 2005 Characterizaion of MADS-box genes in charophycean green alga and its implication for the evolution of MADS-box genes. Proc. Nati. Acad. Sci. U. S. A., 102, 2436-2441. Keywords: charophyve; land plants; Chara; Coleochaete; Closterium Strain(s): 67,  68  PubMed: 15699346 DOI: 10.1073/pnas.0409860102 Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID). Keywords: Microcystis; bloom; salt tolerance; sucrose; genomics; brackish water; horizontal gene trasnfer; ecotype Strain(s): 44,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  103,  104,  105,  107,  108,  109,  112,  298,  299,  478,  604,  843,  901,  1050,  1052,  1059,  1063,  1067,  1069,  1070,  1075,  1076,  1085,  1093,  1094,  1098,  1100,  1101,  1102,  1104,  1105,  1106,  1107,  1108,  1113,  1114,  1115,  1122,  1128,  1130,  1131,  1132,  1134,  1139,  1141,  1142,  1143,  1144,  1150,  1170,  1174,  1175,  1176,  1177,  1179,  1181,  1183,  1185,  1211,  1213,  1214,  1215,  1232,  1234,  1238,  1239,  1252,  2088,  2090,  2091,  2465,  2466,  2467,  2468,  2469,  2470,  2471,  2472,  2473,  2475,  2476,  2477,  2478,  2479,  2480,  2481,  2482,  2483,  2484,  2485,  2486,  2487,  2488,  2489,  2490,  2491,  2492,  2494,  2495,  2546,  2547,  2548,  2549,  2550,  2551,  2552,  2553,  2554,  2555,  2556,  2557,  2558,  2559,  2560,  2561,  2592,  2594,  2595,  2596,  2597,  2598,  2599,  2600,  2601,  2602,  2603,  2604,  2605,  2606,  2607,  2608,  2610,  2611,  2612,  2613,  2617,  2618,  2619,  2620,  2621,  2622,  2623,  2624,  2625,  2626,  2628,  2629,  4234  PubMed: 29922255 DOI: 10.3389/fmicb.2018.01150 Tanabe, Y., Kasai, F., Watanabe, M. M. 2007 Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa. Microbiology, 153, 3695-3703. Strain(s): 44,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  103,  104,  105,  106,  107,  108,  109,  110,  111,  112,  298,  299,  478,  604,  843,  901,  933,  1050,  1051,  1052,  1053,  1054,  1055,  1056,  1057,  1058,  1059,  1060,  1061,  1062,  1063,  1064,  1065,  1066,  1067,  1068,  1069,  1070,  1072,  1075,  1076,  1077,  1085,  1090,  1091,  1092,  1093,  1094,  1095,  1096,  1097,  1098,  1100,  1101,  1102,  1103,  1104,  1105,  1106,  1107,  1108,  1113,  1114,  1115,  1122,  1123,  1124,  1125,  1126,  1127,  1128,  1129,  1130,  1131,  1132,  1133,  1134,  1135,  1136,  1137,  1138,  1139,  1140,  1141,  1142,  1143,  1144,  1145,  1146,  1147,  1148,  1149,  1150,  1151,  1152,  1153,  1155,  1156,  1157,  1159,  1160,  1161,  1162,  1163,  1164,  1170,  1171,  1172,  1209,  1211,  1213,  1214,  1215,  1216,  1217,  1218,  1219,  1220,  1221,  1222,  1223,  1224,  1225,  1226,  1227,  1228,  1229,  1230,  1231,  1232,  1233,  1234,  1235,  1236,  1237,  1238,  1239,  1240,  1241,  1242,  1243,  1244,  1245,  1251,  1252,  1253,  1254  PubMed: 17975077 DOI: 10.1099/mic.0.2007/010645-0 Tanabe, Y., Kasai, F., Watanabe, M. M. 2009a Fine-scale spatial and temporal genetic differentiation　of water bloom-forming cyanobacterium Microcystis aeruginosa: revealed by multilocus sequence typing. Environ. Microbiol. Rep., 1, 575-582. Strain(s): 2469,  2470,  2471,  2472,  2473,  2474,  2475,  2476,  2477,  2478,  2479,  2480,  2481,  2482,  2483,  2484,  2485,  2486,  2487,  2488,  2489,  2490,  2491,  2492,  2493,  2494,  2495,  2496,  2546,  2547,  2548,  2549,  2550,  2551,  2552,  2553,  2554,  2555,  2556,  2557,  2558,  2559,  2560,  2561,  2592,  2593,  2594,  2617,  2618  PubMed: 23765937 DOI: 10.1111/j.1758-2229.2009.00088.x Tanabe, Y., Kaya, K., Watanabe, M. M. 2004 Evidence for recombination in the microcystin synthetase (mcy) genes of toxic cyanobacteria Microcystis spp. J. Mol. Evol., 58, 633-641. Keywords: cyanobacteria; microcystin synthetase; Microcystis; NRPS; recombination; split decomposition Strain(s): 88,  89,  90,  102,  103,  107  PubMed: 15461420 DOI: 10.1007/s00239-004-2583-1 Tanabe, Y., Sano, T., Kasai, F., Watanabe, M. M. 2009b Recombination, cryptic clades and neutral molecular divergence of the microcystin synthetase (mcy) genes of toxic cyanobacterium Microcystis aeruginosa. BMC Evol. Biol., 9, 115 (article ID). Strain(s): 44,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  103,  104,  105,  106,  107,  108,  109,  110,  111,  112,  298,  299,  478,  604,  843,  901,  1050,  1051,  1052,  1053,  1054,  1055,  1056,  1057,  1058,  1059,  1060,  1061,  1062,  1063,  1064,  1065,  1066,  1067,  1068,  1069,  1070,  1072,  1075,  1076,  1077,  1085,  1090,  1091,  1092,  1093,  1094,  1095,  1096,  1097,  1098,  1100,  1101,  1102,  1103,  1104,  1105,  1106,  1107,  1108,  1113,  1114,  1115,  1122,  1123,  1124,  1125,  1126,  1127,  1128,  1129,  1130,  1131,  1132,  1133,  1134,  1135,  1136,  1137,  1138,  1139,  1140,  1141,  1142,  1143,  1144,  1145,  1146,  1147,  1148,  1149,  1150,  1151,  1152,  1153,  1155,  1156,  1157,  1159,  1160,  1161,  1162,  1163,  1164,  1170,  1171,  1172,  1209,  1211,  1213,  1214,  1215,  1216,  1217,  1218,  1219,  1220,  1221,  1222,  1223,  1224,  1225,  1226,  1227,  1228,  1229,  1230,  1231,  1232,  1233,  1234,  1235,  1236,  1237,  1238,  1239,  1240,  1241,  1242,  1243,  1244,  1245,  1251,  1252,  1253,  1254,  2465,  2466,  2467,  2469,  2470,  2471,  2472,  2473,  2474,  2475,  2476,  2477,  2478,  2479,  2561  PubMed: 19463155 DOI: 10.1186/1471-2148-9-115 Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M. 2019 A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa. FEMS Mircobiol. Lett., 366, fnz190 (article ID). Keywords: Microcystis; compatible solute; brackish water; sucrose Strain(s): 4325  PubMed: 31504438 DOI: 10.1093/femsle/fnz190 Tanaka, I., Matsuoka, S., Murata, M., Tachibana, K. 1998 A new ceramide with a novel branched-chain fatty acid isolated from the epiphytic dinoflagellate Coolia monotis. J. Nat. Prod., 61, 685-688. Strain(s): 615  PubMed: 9599280 DOI: 10.1021/np970554o Tanaka, K., Kishi, M., Assaye, H., Toda, T. 2020 Low temperatures in dark period affect biomass productivity of a cyanobacterium Arthrospira platensis. Algal Res., 52, 102132 (article ID). Keywords: Microalgae; Respiration; Temperature; Arthrospira platensis; Biomass productivity; Night biomass loss Strain(s): 39  DOI: 10.1016/j.algal.2020.102132 Tanaka, N., Mogi, Y., Fujiwara, T., Yabe, K., Toyama, Y., Higashiyama, T., Yoshida, Y. 2021 CZON-cutter - a CRISPR-Cas9 system for multiplexed organelle imaging in a simple unicellular alga. J. Cell Sci., 134, jcs258948 (article ID). Keywords: CRISPR-Cas9 gene editing; Multiplexed organelle imaging; Rhodophyta; Cyanidioschyzon merolae; Organelle division; Cell cycle Strain(s): 3377  PubMed: 34633046 DOI: 10.1242/jcs.258948 Tanaka, S. & Nozaki, H. 1997 Notes on microalgae in Japan (3). Pteromonas angulosa (Carter) Lemmermann (Chlorophyceae, Volvocales). Jpn. J. Phycol. (Sôrui), 45, 183-184 (in Japanese with English title). Strain(s): 738,  739,  740  Tang, J. Y., Anderson, D. M., Au, D. W. T. 2005 Hydrogen peroxide is not the cause of fish kills associated with Chattonella marina: Cytological and physiological evidence. Aquat. Toxicol., 72, 351-360. Keywords: Harmful algal bloom; HAB; Fish kill mechanism; Osmoregulation; Reactive oxygen species; Quantitative ultrastructure; Chattonella marina Strain(s): 3  PubMed: 15848254 DOI: 10.1016/j.aquatox.2005.01.007 Tang, T., Liu, X., Yuan, Y., Kiya, R., Shen, Y., Zhang, T., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikun, Y. 2022 Dual-frequency impedance assays for intracellular components in microalgal cells. Lab Chip, 22, 550-559. Strain(s): 48  PubMed: 35072196 DOI: 10.1039/d1lc00721a Tang, T., Liu, X., Yuan, Y., Zhang, T., Kiya, R., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikum, Y. 2022 Impedance-based tracking of the loss of intracellular components in microalgae cells. Sens. Actuator B-Chem., 358, 131514 (article ID). Keywords: Chloroplasts; Impedance cytometry; Interior components loss; Intracellular analysis; Single cell analysis Strain(s): 48  DOI: 10.1016/j.snb.2022.131514 Tang, T., Liu, X., Yuan, Y., Zhang, T., Kiya, R., Yang, Y., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikum, Y. 2022 Assessment of the electrical penetration of cell membranes using four-frequency impedance cytometry. Microsyst. Nanoeng., 8, 68 (article ID). Strain(s): 48  PubMed: 35757522 DOI: 10.1038/s41378-022-00405-y Tang, X. M., Krausfeldt, L. E., Shao, K., LeCleir, G. R., Stough, J. M. A., Gao, G., Boyer, G. L, Zhang, Y., Paerl, H. W., Qin, B., Wilhelm, S. W. 2018 Seasonal gene expression and the ecophysiological implications of toxic Microcystis aeruginosa blooms in Lake Taihu. Environ. Sci. Technol., 52, 11049–11059. Strain(s): 843  PubMed: 30168717 DOI: 10.1021/acs.est.8b01066 Tani, Y. & Tsumura, H. 1989 Screening for tocopherol-producing microorganisms and α-tocopherol production by Euglena gracilis Z. Agric. Biol. Chem., 53, 305-312. Strain(s): 48  DOI: 10.1271/bbb1961.53.305 Tanifuji, G., Erata, M., Ishida, K-I., Onodera, N., Hara, Y. 2006 Diversity of secondary endosymbiont-derived actin-coding genes in cryptomonads and their evolutionary implications. J. Plant Res., 119, 205-215. Keywords: Cryptomonads; Nucleomorph; Symbiotic gene reorganization; Symbiont actin gene Strain(s): 697,  700,  701,  702,  708,  712,  765  PubMed: 16570126 DOI: 10.1007/s10265-006-0263-5 Tanifuji, G., Onodera, N., Hara, Y. 2010 Nucleomorph genome diversity and its phylogenetic implications in cryptomonad algae. Phycol. Res., 58, 230-237. Keywords: cryptomonads; endosymbiosis; evolution; genome reduction; nucleomorph; phylogeny Strain(s): 274,  277,  280,  697,  699,  701,  702,  704,  708,  712,  715,  765  DOI: 10.1111/j.1440-1835.2010.00580.x Tanifuji, G., Takabayashi, S., Kume, K., Takagi, M., Nakayama, T., Kamikawa, R., Inagaki, Y., Hashimoto, T. 2018 The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487 (article ID). Strain(s): 1968  PubMed: 29590215 DOI: 10.1371/journal.pone.0194487 Tanioka, Y., Miyamoto, E., Yabuta, Y., Ohnishi, K., Fujita, T., Yamaji, R., Misono, H., Shigeoka, S., Nakano, Y., Inui, H., Watanabe, F. 2010 Methyladeninylcobamide functions as the cofactor of methionine synthase in a cyanobacterium, Spirulina platensis NIES-39. FEBS Lett., 584, 3223-3226. Keywords: adeninylcobamide; cobalamin; cyanobacteria; methionine synthase; pseudovitamine B12; Spirulina platensis Strain(s): 39  PubMed: 20558164 DOI: 10.1016/j.febslet.2010.06.013 Taniuchi, Y., Murakami, A., Ohki, K. 2008 Whole-cell immunocytochemical detection of nitrogenase in cyanobacteria: improved protocol for highly fluorescent cells. Aquat. Microb. Ecol., 51, 237-247. Keywords: Diazotrophic unicellular cyanobacteria; Marine cyanobacteria; Immunocytochemical detection; Nitrogenase; Unicellular cyanobacteria Strain(s): 3600  DOI: 10.3354/ame01197 Tanno, A., Tokutsu, R., Arakaki, Y., Ueki, N., Minagawa, J., Yoshimura, K., Hisabori, T., Nozaki, H., Wakabayashi, K. 2021 The four-celled Volvocales green alga Tetrabaena socialis exhibits weak photobehavior and high-photoprotection ability. PLoS One, 16, e0259138 (article ID). Strain(s): 571  PubMed: 34699573 DOI: 10.1371/journal.pone.0259138 Tansley, C., Houghton, J., Rose, A. M. E., Witek, B., Payet, R. D., Wu, T., Miller, J. B. 2023 CIPK-B is essential for salt stress signalling in Marchantia polymorpha. New Phytol., 237, 2210-2223. Keywords: calcineurin B-like protein; calcium signalling; CBL-interacting protein kinase; evolution; liverwort; Marchantia polymorpha; salt stres Strain(s): 2285  PubMed: 36660914 DOI: 10.1111/nph.18633 Tasmin, R., Shimasaki, Y., Tsuyama, M., Qiu, X., Khalil, F., Mukai, K., Khanam, M. R. M., Yamada, N., Fukuda, S., Kang, I. J., Oshima, Y. 2018 Effects of water temperature and light intensity on the acute toxicity of herbicide thiobencarb to a green alga, Raphidocelis subcapitata. Environ. Sci. Pollut. Res., 25, 25363–25370. Keywords: Thiobencarb; Raphidocelis subcapitata; Watertemperature; Lightintensity; Photosystem II; Effectiveconcentration Strain(s): 35  PubMed: 29946846 DOI: 10.1007/s11356-018-2599-5 Tasmin, R., Shimasaki, Y., Tsuyama, M., qiu, X., Khalil, F., Okino, N., Yamada, N., Fukuda, S., Kang, I.-J., Oshima, Y. 2014 Elevated water temperature reduces the acute toxicity of the widely used herbicide diuron to a green alga, Pseudokirchneriella subcapitata. Environ. Sci. Pollut. Res., 21, 1064-1070. Keywords: Diuron; Pseudokirchneriella subcapitata; Water temperature; Photosynthetic activity; Intracellular H2O2. Strain(s): 35  PubMed: 23872901 DOI: 10.1007/s11356-013-1989-y Tatarazako, N., Yamamoto, K., Iwasaki, K. 2002 Subacute toxicity of wood preservatives, DDAC and BAAC, in several aquatic organisms. J. Health Sci., 48, 359-365. Keywords: biological test; wood preservative; chronic toxicity; daphnia; green algae; fish Strain(s): 35  DOI: 10.1248/jhs.48.359 Tatsuzawa, H. & Takizawa, E. 1996 Fatty acid and lipid composition of the acidophilic green alga Chlamydomonas sp. J. Phycol., 32, 598-601. Keywords: acidophilic algae; Chlamydomonas sp.; Chlamydomonas reinhardtii; Chlorophyta; culture conditions; fatty acids; lipids Strain(s): 3284  DOI: 10.1111/j.0022-3646.1996.00598.x Tawfik, A., Niaz, H., Qadeer, K., Qyyum, M. A., Liu, J. J., Lee, M. 2022 Valorization of algal cells for biomass and bioenergy production from wastewater: Sustainable strategies, challenges, and techno-economic limitations. Renew. Sust. Energ. Rev., 157, 112024 (article ID). Keywords: Xenobiotic compounds; Micro-pollutants; Enzyme activity; Biomass; Bioenergy; Algae-based wastewater treatment Strain(s): 19,  23,  44,  226,  422,  437,  2169,  2220,  3284  DOI: 10.1016/j.rser.2021.112024 Temraleeva, A. D. 2018 Cyanobacterial diversity in the soils of russian dry steppes and semideserts. Microbiology, 87, 249-260. Keywords: cyanobacteria; soils dry; steppes semideserts Strain(s): 24  DOI: 10.1134/S0026261718020169 Temraleeva, A. D., Moskalenko, S. V., Bachura, Y. M. 2017 Morphology, ecology, and 18S rDNA phylogeny of the green microalgal order Protosiphonales (Chlorophyceae, Chlorophyta). Microbiology, 86, 159-169. Keywords: green microalgae; morphology; ecology; molecular phylogeny; polyphasic approach Strain(s): 2293  DOI: 10.1134/S0026261717020205 Temraleeva, A., Krivina, E., Boldina, O. 2022 Edaphochloris, gen. nov.: a new genus of soil green algae (Trebouxiophyceae, Chlorophyta) with simple morphology. Plant Syst. Evol., 308, 4 (article ID). Strain(s): 4016  DOI: 10.1007/s00606-021-01795-8 Terasaki, M. & Itabashi, Y. 2002 Free fatty acid level and galactolipase activity in a red tide flagellate Chattonella marina (Raphidophyceae). J. Oleo Sci., 51, 213-218. Keywords: Chattonella marina; free fatty acid; galactolipase; monogalactosyldiacylglycerol Strain(s): 3  DOI: 10.5650/jos.51.213 Terasaki, M., Itabashi, Y., Suzuki, T., Nishimura, K. 2002 An improved method for determining the composition of FFA in red tide flagellates by RP-HPLC with fluorescence detection. J. Am. Oil Chem. Soc., 79, 1181-1186. Keywords: 9-anthryldiazomethane; Chattonella antiqua; Chattonella marina; fluorescence detection; free fatty acid; Heterosigma akashiwo; reversed-phase HPLC Strain(s): 1,  3  DOI: 10.1007/s11746-002-0624-1 Terashita, M., Maruyama, S., Tanaka, K. 2006 Cytoplasmic localization of the single glutamine synthetase in a unicellular red alga, Cyanidioschyzon merolae 10D. Biosci. Biotechnol. Biochem., 70, 2313-2315. Keywords: Cyanidioschyzon merolae; glutamine synthetase; localization; nitrogen assimilation; red alga Strain(s): 3377  PubMed: 16960360 DOI: 10.1271/bbb.60174 Tezuka, M., Satou, Y., Nakamura, M. 2005 The effect of phosphorus in the fine-grained soil on the eutrophication of closed water area. J. JSCE [Doboku-kôgaku Ronbunshû], 804 (VII-37), 113-123 (in Japanese with English summary). Keywords: eutrophication; fine-grained soil; phosphorus Strain(s): 44  Thakong, W., Shimizu, K., Kodato, M., Iwami, N., Whangchai, N., Itayama,T. 2020 Sequencing of 18S rRNA gene of Bdelloid rotifers and design of the primers for real-time PCR. Maejo Int. J. Energ. Environ. Commun., 1-2, 55-63. Keywords: Rotifer; 18S rRNA gene; Specific primer; In-fusion cloning; Real-time PCR Strain(s): 843  Tharek, A., Jamaluddin, H., Salleh, M. M., Yahya, N. A., Kaha, M., Hara, H., Iwamoto, K., Mohamad, S. E. 2020 Astaxanthin production by tropical microalgae strains isolated from environment in Malaysia. Asian Jr. of Microbiol. Biotech. Env. Sc., 22, 168-173. Keywords: Astaxanthin, H. pluvialis; Coelastrum sp.; Acutodesmus obliquus; High light; Nitrogen starvation; mixotrophy Strain(s): 144  Theriot, E. C., Ashworth, M., Ruck, E., Nakov, T., Jansen, R. K. 2010 A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Pl. Ecol. Evol., 143, 278-296. Keywords: Diatoms; phylogeny; rbcL; psbC; SSU; stratigraphy Strain(s): 461  DOI: 10.5091/plecevo.2010.418 Thiel, T., Pratte, B. S., Zhong, J., Goodwin, L., Copeland, A., Lucas, S., Han, C., Pitluck, S., Land, M. L., Kyrpides, N. C., Woyke, T. 2014 Complete genome sequence of Anabaena variabilis ATCC 29413. Stand. Genomic Sci., 9, 562-573. Keywords: Nitrogen Fixation; Joint Genome Institute; Heterotrophic Growth; Anabaena variabilis; Cyanobacterial Genome Strain(s): 2095  PubMed: 25197444 DOI: 10.4056/sigs.3899418 Tie, J., Uchigasaki, S., Haseba, T., Ohno, Y., Isahai, I., Oshida, S. 2010 Direct and rapid PCR amplification using digested tissues for the diagnosis of drowning. Electrophoresis, 31, 2411-2415. Keywords: diagnosis; direct PCR amplification; drowning; human tissues; phytoplankton Strain(s): 47  PubMed: 20564264 DOI: 10.1002/elps.200900754 Tillett, D., Neilan, B. A. 2000 Xanthogenate nucleic acid isolation from cultured and environmental cyanobacteria. J. Phycol., 36, 251-258. Keywords: cyanobacteria; DNA extraction; nucleic acids; PCR; xanthogenate Strain(s): 81,  102,  107  DOI: 10.1046/j.1529-8817.2000.99079.x Tjahjono, A. E., Hayama, Y., Kakizono, T., Terada, Y., Nishio, N., Nagai, S. 1994 Hyper-accumulation of astaxanthin in a green alga Haematococcus pluvialis at elevated temperatures. Biotechnol. Lett., 16, 133-138. Strain(s): 144  DOI: 10.1007/BF01021659 Tjahjono, A. E., Kakizono, T., Hayama, Y., Nagai, S. 1993 Formation and regeneration of protoplast from a unicellular green alga Haematococcus pluvialis. J. Ferment. Bioeng., 75, 196-200. Strain(s): 144  DOI: 10.1016/0922-338X(93)90115-O Tjahjono, A. E., Kakizono, T., Hayama, Y., Nishio, N., Nagai S. 1994 Isolation of resistant mutants against carotenoid biosynthesis inhibitors for a green alga Haematococcus pluvialis, and their hybrid formation by protoplast fusion for breeding of higher astaxanthin producers. J. Ferment. Bioeng., 77, 352-357. Strain(s): 144  DOI: 10.1016/0922-338X(94)90003-5 Toda, H., Yazawa, M., Yagi, K. 1992 Amino acid sequence of calmodulin from Euglena gracilis. Eur. J. Biochem., 205, 653-660. Strain(s): 48  DOI: 10.1111/j.1432-1033.1992.tb16824.x Toda, K., Takano, H., Nozaki, H., Kuroiwa, T. 2001 The second serine acetyltransferase, bacterial-type O-acetylserine (thiol) lyase and eukaryotic-type O-acetylserine (thiol) lyase from the primitive red alga Cyanidioschyzon merolae. J. Plant Res., 114, 291-300. Keywords: Cysteine synthesis; Serine acetyltransferase; O-acetylserine (thiol) lyase; Primitive red alga; Cyanidioschyzon merolae Strain(s): 3377  DOI: 10.1007/PL00013990 Toguri, T., Muto, S., Mihara, S., Miyachi, S. 1989 Synthesis and degradation of carbonic anhydrase in a synchronized culture of Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 533-539. Keywords: carbonic anhydrase synthesis; Chlamydomonas reinhardtii; synchronous culture Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a077772 Toguri, T., Muto, S., Miyachi, S. 1986 Biosynthesis and intracellular processing of carbonic anhydrase in Chlamydomonas reinhardtii. Eur. J. Biochem., 58, 443-450. Strain(s): 2235  Tohezou, Y., Iwata, T., Nakayama, E. 1999 The research on the eutrophication of the sea area. - The situation of AGP in Toyama Bay - Bull. Toyama Pref. Environ. Sci. Res. Center, 27, 39-44 (in Japanese with English summary). Strain(s): 561  Tokodi, N., Drobac Backović, D., Lujić, J., Šćekić, I., Simić, S., Dordević, N., Dulić, T., Miljanović, N., Marinović, Z., Savela, H., Meriluoto, J., Svirčev, Z. 2020 Protected freshwater ecosystem with incessant cyanobacterial blooming awaiting a resolution. Water, 12, 129 (article ID). Keywords: cyanobacteria; blooms; microcystin; Lake Ludoš Strain(s): 107  DOI: 10.3390/w12010129 Tokodi, N., Drobac, D., Meriluoto, J., Lujić, J., Marinović, Z., Važić, T., Nybom, S., Simeunović, J., Dulić, T., Lazić, G., Petrović, T., Vuković-Gačić, B., Sunjog, K., Kolarević, S., Kračun-Kolarević, M., Subakov-Simić, G., Miljanović, B., Codd, GA., Svirčev, Z. 2018 Cyanobacterial effects in Lake Ludoš, Serbia - Is preservation of adegraded aquatic ecosystem justified? Sci. Total Environ., 635, 635, Keywords: Wetland; Cyanobacteria; Cyanotoxin; Eutrophication; Serbia Strain(s): 107  PubMed: 29710560 DOI: 10.1016/j.scitotenv.2018.04.177 Tokunaga, S., Morimoto, D., Koyama, T., Kubo, Y., Shiroi, M., Ohara, K., Tokuhiro, H., Mori, Y., Nakagawa, S., Sawayama, S. 2021 Enhanced lutein production in Chlamydomonas reinhardtii by overexpression of the lycopene epsilon cyclase gene. Appl. Biochem. Biotechnol., 193, 1967–1978. Keywords: Lutein; Lycopene epsilon cyclase; Carotenoid; Chlamydomonas reinhardtii; Transgene Strain(s): 2237  PubMed: 33528746 DOI: 10.1007/s12010-021-03524-w Tokunaga, S., Sanda, S., Uraguchi, Y., Nakagawa, S., Sawayama, S. 2019 Overexpression of the DOF-type transcription factor enhances lipid synthesis in Chlorella vulgaris. Appl. Biochem. Biotechnol., 189, 116–128. Keywords: Chlorella vulgaris; DOF transcriptional factor; Transgene; Lipid production Strain(s): 2170  PubMed: 30877635 DOI: 10.1007/s12010-019-02990-7 Tomaru, Y. & Kimura, K. 2020 Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms. Diversity-Basel, 12, 225 (article ID). Keywords: marine diatom; Chaetoceros tenuissimus; Chaetoceros setoensis; host-virus specificity; RdRp; ssRNA virus; ssDNA virus; viral genome Strain(s): 3712,  3714,  3715  DOI: 10.3390/d12060225 Tomaru, Y., Kimura, K., Yamaguchi, H. 2014 Temperature alters algicidal activity of DNA and RNA viruses infecting Chaetoceros tenuissimus. Aquat. Microb. Ecol., 73, 171-183. Keywords: Diatom; CtenDNAV; CtenRNAV; Virus; Niche partitioning Strain(s): 3716,  3717  DOI: 10.3354/ame01713 Tomaru, Y., Shirai, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis. Aquat. Microb. Ecol., 50, 103-112. Keywords: Diatom; Virus; Chaetoceros; DNA; Viral ecology Strain(s): 3710,  3713  DOI: 10.3354/ame01170 Tomaru, Y., Shirai, Y., Toyoda, K., Nagasaki, K. 2011 Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat. Microb. Ecol., 64, 175-184. Keywords: Bacilladnavirus; Chaetoceros; Diatom; ssDNA; Virus; Rod-shaped particle Strain(s): 3714,  3715  DOI: 10.3354/ame01517 Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Koike, K., Nagasaki, K. 2011 Isolation and characterization of a single-stranded DNA virus infecting Chaetoceros lorenzianus Grunow. Appl. Environ. Microbiol., 77, 5285-5293. Strain(s): 3711  PubMed: 21666026 DOI: 10.1128/AEM.00202-11 Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2009 Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis. Appl. Environ. Microbiol., 75, 2375-2391. Strain(s): 3713  PubMed: 19233955 DOI: 10.1128/AEM.02580-08 Tomaru, Y., Toyoda, K., Kimura, K. 2018 Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805, 221-230. Keywords: Algal viruses; Primary producers; Marine algae; Real-time quantitative PCR; Restingstage cells Strain(s): 3714,  3715  DOI: 10.1007/s10750-017-3306-0 Tomaru, Y., Toyoda, K., Kimura, K., Takao, Y., Sakurada, K., Nakayama, N., Nagasaki, K. 2013 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (SS08-C03). Phycol. Res., 61, 27-36. Keywords: Bacillarnavirus; Chaetoceros; diatom; ssRNA; virus Strain(s): 3717  DOI: 10.1111/j.1440-1835.2012.00670.x Tomaru, Y., Toyoda, K., Suzuki, H., Nagumo, T., Kimura, K., Takao, Y. 2013 New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis. Sci Rep, 3, 3337 (article ID). Strain(s): 3710,  3711,  3712,  3713  PubMed: 24275766 DOI: 10.1038/srep03337 Tomaru, Y., Yamaguchi, H., Miki, T. 2021 Growth rate-dependent cell death of diatoms due to viral infection and their subsequent coexistence in a semi-continuous culture system. Microbes Environ., 36, ME20116 (article ID). Keywords: diatom; population dynamics; viral infection Strain(s): 3715  PubMed: 33390375 DOI: 10.1264/jsme2.ME20116 Tominaga, H., Hayashida, Y., Hosoya, Y., Kurokawa, M., Sawa, Y., Ochiai, H. 1993 Characterization of a small cryptic plasmid, pPF1, from Phormidium foveolarum and vector construction. Biosci. Biotechnol. Biochem., 57, 1795-1799. Strain(s): 32  PubMed: 7764277 DOI: 10.1271/bbb.57.1795 Tominaga, H., Soejima, K., Kawagishi, S., Ashida, H., Sawa, Y., Ochiai, H. 1993 Structural organization of a cryptic plasmid, pMA1, from Microcystis aeruginosa f. aeruginosa Kutzing. Biosci. Biotechnol. Biochem., 57, 1503-1507. Strain(s): 87  PubMed: 7764220 DOI: 10.1271/bbb.57.1503 Tomioka, N., Nagai, T., Kawasaki, T., Imai, A., Kohata, K. 2008 Quantification of Microcystis in a eutrophic lake by simple DNA extraction and SYBR green real-time PCR. Microbes Environ., 23, 306-312. Keywords: Microcystis; quantification; SYBR Green I; DNA extraction; eutrophic lake Strain(s): 98,  99,  204,  604,  611,  843,  946,  961  DOI: 10.1264/jsme2.ME08515 Tomita, K., Hasegawa, M., Arii, S., Tsuji, K., Bober, B., Harada, K. 2016 Characteristic oxidation behavior of b-cyclocitral from the cyanobacterium Microcystis. Environ. Sci. Pollut. Res., 23, 11998-12006. Keywords: b-cyclocitral; Oxidation; Acidification; Cyanobacteria; Blue color formation; Lysis Strain(s): 102  PubMed: 26961531 DOI: 10.1007/s11356-016-6369-y Tomita, Y., Takeya, M., Suzuki, K., Nitta, N., Higuchi, C., Marukawa-Hashimoto, Y., Osanai, T. 2019 Amino acid excretion from Euglena gracilis cells in dark and anaerobic conditions. Algal Res., 37, 169-177. Keywords: Amino acid; Anaerobic conditions; Euglena gracilis; Fermentation; Glutamate; Glutamine; Metabolite analysis Strain(s): 48  DOI: 10.1016/j.algal.2018.11.017 Tomita, Y., Yoshioka, K., Iijima, H., Nakashima, A., Iwata, O., Suzuki, K., Hasunuma, T., Kondo, A., Yokota-Hirai, M., Osanai, T. 2016 Succinate and lactate production from Euglena gracilis during dark, anaerobic conditions. Front. Microbiol., 7, 2050 (article ID). Keywords: biorefinery; Euglena; lactate; microalgae; succinate Strain(s): 48  PubMed: 28066371 DOI: 10.3389/fmicb.2016.02050 Tomita-Yokotani, K., Kimura, S., Ong, M., Ajioka, R., Igarashi, Y., Fujishiro, H., Katoh, H., Hashimoto, H., Mita, H., Yokobori, S., Ohmori, M. 2020 Tolerance of dried cells of a terrestrial cyanobacterium, Nostoc sp. HK-01 to temperature cycles, helium-ion beams, ultraviolet radiation (172 and 254 nm), and gamma rays: Primitive analysis for space experiments. Eco-Engineering, 32, 47-53. Keywords: Cyanobacteria; Nostoc sp.HK-01; space; environmental tolerance Strain(s): 2109  DOI: 10.11450/seitaikogaku.32.47 Tong, S., Gao, K., Hutchins, D. A. 2018 Adaptive evolution in the coccolithophore Gephyrocapsa oceanica following 1,000 generations of selection under elevated CO2. Glob. Change Biol., 24, 3055-3064. Keywords: calcification; coccolithophore; evolution; Gephyrocapsa oceanica; ocean acidification; plasticity Strain(s): 1318  PubMed: 29356310 DOI: 10.1111/gcb.14065 Tong, S., Hutchins, D. A., Fu, F., Gao, K. 2016 Effects of varying growth irradiance and nitrogen sources on calcification and physiological performance of the coccolithophoreGephyrocapsa oceanica grown under nitrogen limitation. Limnol. Oceanogr., 61, 2234–2242. Strain(s): 1318  DOI: 10.1002/lno.10371 Toume, K. & Ishibashi, M. 2002 5α, 8α-epidioxysterol sulfate from a diatom Odontella aurita. Phytochemistry, 61, 359-360. Keywords: Odontella aurita; diatom; 5a, 8a-epidioxysterol; sulfate Strain(s): 589  PubMed: 12377225 DOI: 10.1016/S0031-9422(02)00224-8 Tounosu, N., Sesoko, K., Hori, K., Shimojima, M., Ohta, H. 2023 Cis‑regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens. Sci Rep, 13, 9635 (article ID). Strain(s): 2285  PubMed: 37322074 DOI: 10.1038/s41598-023-36500-x Toyama, T., Hanaoka, T., Yamada, K., Suzuki, K., Tanaka, Y., Morikawa, M., Mori, K. 2019 Enhanced production of biomass and lipids by Euglena gracilis via co-culturing with a microalga growth-promoting bacterium, Emticicia sp. EG3. Biotechnol. Biofuels, 12, 205 Keywords: Biomass production; Euglena gracilis; Growth-promoting bacteria; Lipid production; Wastewater effluent Strain(s): 48  PubMed: 31695747 DOI: 10.1186/s13068-019-1544-2 Toyama, T., Kasuya, M., Hanaoka, T., Kobayashi, N., Tanaka, Y., Inoue, D., Sei, K., Morikawa, M., Mori, K. 2018 Growth promotion of three microalgae, Chlamydomonas reinhardtii, Chlorella vulgaris and Euglena gracilis, by in situ indigenous bacteria in wastewater efuent. Biotechnol. Biofuels, 11, 176 (article ID). Keywords: Microalgae; Wastewater efuent; Enhanced biomass production; Microalgae growth-promoting bacteria Strain(s): 48,  2172,  2235  PubMed: 29983739 DOI: 10.1186/s13068-018-1174-0 Toyoda, K., Gishi, M., Ihara, I. 2011 Effect of light quality and nutrients on growth of hydrocarbon-rich microalgae, Botryococcus braunii. In ISHS Acta Horticulturae 907: VI International Symposium on Light in Horticulture, pp. 255-258. Keywords: growth rate; phosphate; nitrogen; turbidity; ATR-FTIR Strain(s): 836  Toyoda, K., Kimura, K., Hata, N., Nakayama, N., Nagasaki, K., Tomaru, Y. 2012 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (strain TG07-C28). Plankton Benthos Res., 7, 20-28. Strain(s): 3716  DOI: 10.3800/pbr.7.20 Toyoda, K., Nagasaki, K., Tomaru, Y. 2010 Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 5, 56-61. Keywords: Chaetoceros tenuissimus; detection; diatom; enumeration; TaqMan-based real-time PCR Strain(s): 3715  DOI: 10.3800/pbr.5.56 Toyomizu, M., Suzuki, K., Kawata, Y., Kojima, H., Akiba, Y. 2001 Effective transformation of the cyanobacterium Spirulina platensis using electroporation. J. Appl. Phycol., 13, 209-214. Keywords: Arthrospira platensis; cyanobacterium; blue-green alga; electroporation; feed enzyme; poultry; Spirulina; transformation Strain(s): 39  DOI: 10.1023/A:1011182613761 Toyoshima, H., Miyata, A., Yoshida, R., Ishige, T., Takaichi, S., Kawasaki, S. 2021 Distribution of the water-soluble astaxanthin binding carotenoprotein (AstaP) in Scenedesmaceae. Mar. Drugs, 19, 349 (article ID). Keywords: astaxanthin; Scenedesmus; Coelastrella; carotenoprotein; astaxanthin-binding protein Strain(s): 2238,  2540  PubMed: 34203079 DOI: 10.3390/md19060349 Toyoshima, M. & Sato, N. 2018 Optimization of triacylglycerol and starch production in Chlamydomonas debaryana NIES-2212 with regard to light intensity and CO2 concentration. Microbiology, 164, 359-368. Keywords: light intensity; CO2 supplement; TAG; Chlamydomonas debaryana; starch Strain(s): 2212  PubMed: 29458672 DOI: 10.1099/mic.0.000603 Toyoshima, M., Aikawa, S., Yamagishi, T., Kondo, A., Kawai, H. 2015 A pilot-scale floating closed culture system for the multicellular cyanobacterium Arthrospira platensis NIES-39. J. Appl. Phycol., 27, 2191-2202. Keywords: Arthrospira (Spirulina) platensis NIES-39; Biomass productivity; Floating closed culture system; Modified seawater medium; Outdoor sulture Strain(s): 39  DOI: 10.1007/s10811-014-0484-2 Takahashi, K., Moestrup, Ø., Jordan, R. W., Iwataki, M. 2015 High-level accumulation of triacylglycerol and starch in photoautotrophically grown Chlamydomonas debaryana NIES-2212. Plant Cell Physiol., 56, 2447-2456. Keywords: Biofuel; Chlamydomonas debaryana NIES-2212; Fatty acid; Starch; Triacylglycerol Strain(s): 2212  PubMed: 26542110 DOI: 10.1093/pcp/pcv163 Tran, H.-D., Ong, B.-N., Ngo, V.-T., Tran, D.-L., Nguyen, T.-C., Tran-Rhi, B.-H., Do, T.-T., Nguyen, T.-M.-L., Nguyen, X.-H., Melkonian, M. 2022 New angled twin–layer porous substrate photobioreactors for cultivation of Nannochloropsis oculata. Protist, 173, 125914 (article ID). Keywords: Nannochloropsis oculata; twin-layer porous substrate photobioreactor (TL-PSBR) systems; biomass; lipid LED Strain(s): 2145  PubMed: 36270076 DOI: 10.1016/j.protis.2022.125914 Tsubo, Y. 1961 Chemotaxis and sexual behavior in Chlamydomonas. J. Protozool., 8, 114-121. Strain(s): 2222,  2578  DOI: 10.1111/j.1550-7408.1961.tb01191.x Tsubo, Y. 1975 Formation of colorless cells in algae. In Advance of Phycology in Japan, Eds. by Tokida, J. & Hirose, H., VEB Gustav Fischer Verlag, Jena, pp. 180-193. Strain(s): 48  Tsubo, Y. & Matsuda, Y. 1984 Transmission of chloroplast genes in crosses between Chlamydomonas reinhardtii diploids: Correlation with chloroplast nucleoid behavior in young zygotes. Curr. Genet., 8, 223-229. Keywords: Chlamydomonas; tetraploid; chloroplast gene transmission; DAPI staining Strain(s): 2235,  2239  PubMed: 24177743 DOI: 10.1007/BF00417820 Tsubo, Y., Ueda, T., Yokomura, E. 1971 Chloroplast autonomy revealed by nutritionally controlled Euglena gracilis. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, p. 336-338. Strain(s): 48  Tsuchikane, Y., Fujii, T., Ito, M., Sekimoto, H. 2005 A sex pheromone, protoplast release-inducing protein (PR-IP) inducer, induces sexual cell division and production of PR-IP in Closterium. Plant Cell Physiol., 46, 1472-1476. Keywords: Closterium; conjugation; pheromone; sexual cell division; sexual reproduction Strain(s): 67,  68  PubMed: 15970600 DOI: 10.1093/pcp/pci158 Tsuchikane, Y., Fukumoto, R., Akatsuka, S. Fujii, T., Sekimoto, H. 2003 Sex pheromones that induce sexual cell division in the Closterium peracerosum-strigosum-littorale complex (Charophyta). J. Phycol., 39, 303-309. Keywords: Closterium; conjugation; gametangial cell; pheromone; sexual cell division; sexual reproduction Strain(s): 67,  68  DOI: 10.1046/j.1529-8817.2003.02062.x Tsuchikane, Y., Hamaji, T., Ota, K., Kato, S. 2018 Establishment of a clonal culture of unicellular conjugating algae. J. Vis. Exp., 14, e57761 (article ID). Strain(s): 4321  PubMed: 30059030 DOI: 10.3791/57761 Tsuchikane, Y., Ito, M., Sekimoto, H. 2008 Reproductive isolation by sex pheromones in the Closterium peracerosum-strigosum-littorale complex (Zygnematales, Charophyceae). J. Phycol., 44, 1197-1203. Keywords: Closterium; conjugation; pheromone; reproductive isolation; sexual reproduction Strain(s): 53,  54,  58,  59,  64,  65,  67,  68,  69,  70,  229,  261  PubMed: 27041716 DOI: 10.1111/j.1529-8817.2008.00577.x Tsuchikane, Y., Kobayashi, H., Kato, M., Watanabe, J., Wu, J. T., Sekimoto, H. 2018 Identification of a new mating group and reproductive isolation in the Closterium peracerosum–strigosum–littorale complex. J. Plant Res., 131, 735–746. Keywords: Alga; Closterium; Mating group; Reproductive isolation; Sex pheromone; Speciation Strain(s): 53,  54,  55,  64,  65,  66,  67,  68,  261,  262,  4319,  4320  PubMed: 29948484 DOI: 10.1007/s10265-018-1043-8 Tsuchikane, Y., Kokubun, Y., Sekimoto, H. 2010 Characterization and molecular cloning of conjugation-regulating sex pheromones in homothallic Closterium. Plant Cell Physiol., 51, 1515-1523. Keywords: Closterium; Conjugation; Homothallic; Homothallism; Sex pheromone; Sexual reproduction; Zygospore Strain(s): 2666  PubMed: 20656896 DOI: 10.1093/pcp/pcq110 Tsuchikane, Y., Nakai, A., Sekimoto, H. 2014 Detailed analyses on the parthenospore formation in Closterium moniliferum (Zygnematophyceae, Charophyta). Phycologia, 53, 571-578. Keywords: Closteriu; Conjugation; Parthenospore; Pheromone; Sexual reproduction Strain(s): 3646  DOI: 10.2216/14-35R1.1 Tsuchikane, Y., Sato, M., Ootaki, T., Kokubun, Y., Nozaki, H., Ito, M., Sekimoto, H. 2010 Sexual prosesses and phylogenetic relationship of a homothallic strain in the Closterium peracerosum-strigosum-littorale complex (Zygnematales, Charophyceae). J. Phycol., 46, 278-284. Keywords: Closterium; conjugation; heterothallic; pheromone; sexual reproduction Strain(s): 2666  DOI: 10.1111/j.1529-8817.2010.00806. Tsuchikane, Y., Sekimoto, H. 2019 The genus Closterium, a new model organism to study sexual reproduction in streptophytes. New Phytol., 221, 99-104. Keywords: charophycean; Closterium; landplants; mating-type; sexual reproduction Strain(s): 67,  69  PubMed: 29992575 DOI: 10.1111/nph.15334 Tsuchikane, Y., Tsuchiya, M., Hindák, F., Nozaki, H., Sekimoto, H. 2012 Zygospore formation between homothallic and heterothallic strains of Closterium. Sex. Plant Reprod., 25, 1-9. Keywords: Closterium; Conjugation; Homotallism; Heterothallism: Dexual reproduction; Zygospore Strain(s): 58,  59,  60,  61,  62,  63,  64,  65,  67,  68,  69,  70,  261,  2666  PubMed: 21858438 DOI: 10.1007/s00497-011-0174-z Tsuchikane, Y., Tsuchiya, M., Kokubun, Y., Abe, J., Sekimoto, H. 2011 Conjugation processes of Penium margaritaceum (Zygnemophyceae, Charophyta). Phycol. Res., 59, 74-82. Keywords: conjugation; homothallic; homothallism; Penium; selfing conjugation; sexual reproduction; zygospore Strain(s): 2667  DOI: 10.1111/j.1440-1835.2010.00602.x Tsuchiya, M. & Nomaki, H. 2021 Rapid response of the giant protist xenophyophores (Foraminifera, Rhizaria) to organic matter supply at abyssal depths revealed by an in situ dual stable isotope labeling experiment. Deep-Sea Research, 176, 103608 (article ID). Keywords: Xenophyophore; In situ isotope labeling experiment; Abyssal plain; Feeding habit Strain(s): 1383  DOI: 10.1016/j.dsr.2021.103608 Tsuchiya, Y., Watanabe, M. F., Watanabe, M. 1992 Volatile organic sulfur compounds associated with blue-green algae from inland waters of Japan. Wat. Sci. Tech., 25, 123-130. Keywords: blue-green algae; Microcystis aeruginosa; M. wesenbergii; isopropyl mercaptan; isopropyl disulfide; isopropyl sulfonyl chloride; chlorination; mutagenicity; Ames test Strain(s): 88,  1061,  1080,  1081,  1083,  1098,  1104,  1137  DOI: 10.2166/wst.1992.0043 Tsuda, K., Takamura, N., Matsuyama, M., Fujii, Y. 2005 Assessment method for leaf litters allelopathic effect on cyanobacteria. J. Aquat. Plant Manage, 43, 43-46. Keywords: allelopathy; bioassay; leaf disk; Microcystis aeruginosa Strain(s): 88  Tsuji, N., Hirooka, T., Nagase, H., Hirata, K., Miyamoto, K. 2003 Photosynthesis-dependent removal of 2,4-dichlorophenol by Chlorella fusca var. vacuolata. Biotechnol. Lett., 25, 241-244. Keywords: 2,4-dichlorophenol; bioremediation; Chlorella fusca var. vacuolata; green algae; photosyntheis Strain(s): 422,  437  PubMed: 12882578 DOI: 10.1023/A:1022333406 Tsuji, T. & Fujita, Y. 1971 Ascorbate photo-oxidation by a photochemically active chromo-protein isolated from the blue-green alga Anabaena cylindrica: the effect of mono-chromatic illumination. Plant Cell Physiol., 12, 807-811. Strain(s): 19  Tsuji, T. & Fujita, Y. 1972 Electron donor-specificity observed in photosystem I reactions of membrane fragments of the blue-green alga Anabaena variabilis and the higher plant Spinacea oleracea. Plant Cell Physiol., 13, 93-99. Strain(s): 23  Tsuji, Y., Suzuki, I., Shiraiwa, Y. 2009 Photosynthetic carbon assimilation in the coccolithophorid Emiliania huxleyi (Haptophyta): Evidence for the predominant Operation of the C 3 cycle and the Contribution of β-carboxylases to the active anaplerotic reaction. Plant Cell Physiol., 50, 318-329. Strain(s): 837  PubMed: 19109302 DOI: 10.1093/pcp/pcn200 Tsuji, Y., Suzuki, I., Shiraiwa, Y. 2012 Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C 4 compounds. Plant Cell Physiol., 53, 1043-1052. Strain(s): 837  PubMed: 22492231 DOI: 10.1093/pcp/pcs045 Tsuji, Y., Yamazaki, M., Suzuki, I., Shiraiwa, Y. 2015 Quantitative analysis of carbon flow into photosynthetic products functioning as carbon storage in the marine coccolithophore, Emiliania huxleyi. Mar. Biotechnol., 17, 428-440. Keywords: Alkenones; Carbon partitioning; Carbon storage compound; Emiliania huxleyi; Haptophyte; Lipid; biosynthesis Strain(s): 837  PubMed: 14730424 DOI: 10.1007/s10126-002-0081-2 Tsukada, S., Ehara, T., Sumida, S., Osafune, T., Hase, E. 1986 Behaviour of proplastids and their nucleoids in dark-organotrophically grown cells of Euglena gracilis transferred to an inorganic medium. Br. Phycol. J., 21, 155-163. Strain(s): 48  DOI: 10.1080/00071618600650181 Tsukui, T. & Yamazaki, M. 1992 Studies on eutrophication in rivers (II). Determination of AGP in the Kanda River System. Tokyo-to Kankyô Kagaku Kenkyûjo Nenpô 1992, 162-166 (in Japanese with English Summary). Strain(s): 35  Tsuruta, K., Yoshida, Y., Kusumoto, N., Sekine, N., Ashitani, T., Takahashi, K. 2011 Inhibition activity of essential oils obtained from Japanese trees against Skeletonema costatum. J. Wood Sci., 57, 520-525. Keywords: Essential oil; Inhibition activity; Red tide plankton; · Skeletonema costatum; Woody waste Strain(s): 16  DOI: 10.1007/s10086-011-1209-7 Tsusue, Y. & Fujita, Y. 1964 Mono- and oligo-saccharides in the blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 10, 283-294. Strain(s): 37  Tsuzuki, M. 1983 Mode of HCO3-utilization by the cells of Chlamydomonas reinhardtii grown under ordinary air. Z. Pflanzenphysiol., 110, 29-37. Strain(s): 2160,  2170,  2235  Tsuzuki, M. 1986 Transport and fixation of inorganic carbon in the cells of Chlorella vulgaris 11h grown under ordinary air. Plant Cell Physiol., 27, 1233-1240. Keywords: carbon dioxide; carbonic anhydrase; Chlorella vulgaris; inorganic carbon; photosynthesis Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a077220 Tsuzuki, M. & Miyachi, S. 1979 Effects of CO2 concentration during growth and of ethoxyzolamide on CO2 compensation point in Chlorella. FEBS Lett., 103, 221-223. Strain(s): 2160  Tsuzuki, M. & Miyachi, S. 1989 The function of carbonic anhydrase in aquatic photosynthesis. Aquatic Botany, 34, 85-104. Strain(s): 2093,  2138,  2160,  2173,  2235  DOI: 10.1016/0304-3770(89)90051-X Tsuzuki, M., Miyachi, S., Berry, J. A. 1985 Intercellular accumulation of inortanic carbon and its active species taken up by Chlorella vulgaris 11h. In Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms, Eds. by Lucas, W. J. & Berry, J. A., American Society of Plant Physiologists, Rockville, Md, pp. 53-66. Strain(s): 2160  Tsuzuki, M., Muto, S., Miyachi, S. 1981 Role of carbonic anhydrase in photosynthesis of higher plants: A possible limiting step in CO2 transport. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, pp. 483-492. Strain(s): 2160  Tsuzuki, M., Ohnuma, E., Sato, N., Takaku, T., Kawaguchi, A. 1990 Effects of CO2 concentration during growth on fatty acid composition in microalgae. Plant Physiol., 93, 851-856. Strain(s): 48,  2093,  2138,  2160,  2235  PubMed: 1666759 DOI: 10.1104/pp.93.3.851 Tsuzuki, M., Okada, K., Isoda, H., Hirano, M., Odaka, T., Saijo, H., Aruga, R., Miyauchi, H., Fujiwara, S. 2019 Physiological properties of photoautotrophic microalgae and cyanobacteria relevant to industrial biomass production. Mar. Biotechnol., 21, 406-415. Keywords: Algae; Biomass; Chlorella; Culture system; Cyanobacteria; Photosynthesis Strain(s): 2160  PubMed: 30927152 DOI: 10.1007/s10126-019-09890-1 Tsuzuki, M., Shimamoto, T., Yang, S. Y., Miyachi, S. 1984 Diversity in intracellular locality, nature, and function of carbonic anhydrase in verious plants. Ann. NY Acad. Sci., 429, 238-240. Strain(s): 687,  2160,  2161,  2162,  2170,  2173,  2235,  2280  DOI: 10.1111/j.1749-6632.1984.tb12341.x Tsuzuki, M., Shiraiwa, Y., Miyachi, S. 1980 Role of carbonic anhydrase in photosynthesis in Chlorella derived from kinetic analysis of 14CO2 fixation. Plant Cell Physiol., 21, 677-688. Keywords: carbonic anhydrase; Chlorella; CO2 fixation; kinetic analysis; photosynthesis Strain(s): 2160  DOI: 10.1093/oxfordjournals.pcp.a076042 Tuji, A. & Niiyama, Y. 2010 Phylogenetic study by the morphological and molecular analyses of Japanese planktonic Anabaena species. Bull. Natl. Mus. Nat. Sci., Ser. B, 36, 71-80. Keywords: Anabaena; Anabaena oumiana; culture, Japan, morphology, planktonic; rbcL; rbcX; rDNA; Sphaerospermum oumianum (M. Watanabe) Tuji et Niiyama comb. nov. Strain(s): 807,  808,  820,  822,  826,  1639,  1642,  1643,  1646,  1651,  1652,  1653,  1657,  1658,  1665,  1667,  1668,  1672,  1673,  1674,  1677,  1678,  1683,  1690,  1693,  1694,  1696,  1697,  1875,  1878,  1880,  1884,  1887,  1891,  1894,  1895,  1904,  1909,  1920,  1921,  1922,  1929,  1931,  1934,  1939,  1942,  1950  Tuji, A. & Niiyama, Y. 2016 The identity and phylogeny of Pseudanabaena Strain, NIES-512, producing 2-methylisoborneol (2-MIB). Bull. Natl. Mus. Nat. Sci., Ser. B, 42, 83-89. Keywords: 2-MIB; Pseudanabaena foetida var. intermedia; Pseudanabaena foetida var. subfoetida; secondary structure Strain(s): 512,  4059  Tuji, A. & Niiyama, Y. 2018 Two new Pseudanabaena (Cyanobacteria, Synechococcales) species from Japan, Pseudanabaena cinerea and Pseudanabaena yagii, which produce 2-methylisoborneol. Phycol. Res., 66, 291-299. Keywords: internal transcribed spacer region; Phormidiumtenue; Pseudanabaena foetida; Pseudanabaena subfoetida; rRNA operon; secondary structure Strain(s): 512,  4059,  4062,  4063,  4064,  4065,  4237,  4238  DOI: 10.1111/pre.12327 Tuji, A., Nakagawa, M., Sato, M., Yamaguchi, H. 2018 A new planktonic diatom, Craticula pseudocitrus sp. nov., Naviculales, Bacillariophyceae found in Lake Kasumigaura, Japan. Bull. Natl. Mus. Nat. Sci., Ser. B, 44, 15-22. Keywords: Craticula citrus; Craticula pseudocitrus sp. nov.; Lake Kasumigaure; Navicula citrus Strain(s): 4015  Tuji, A., Niiyama, Y., Ichise, S. 2023 Distribution and phylogeny of Dolichospermum hangangense (Nostcales, Cyanobacteria) found in Japanese lakes and reservoirs. Bull. Natl. Mus. Nat. Sci., Ser. B, 49, 83-95. Keywords: Dolichospermum circinale; Dolichospermum hangangense; distribution; phylogeny, Japan Strain(s): 80,  808,  811,  820,  822,  823,  1650,  1651,  1680,  1682,  1683,  1877,  1908  Tuji, A., Ogiso-Tanaka, E., Yamaguchi, H. 2024 Complete genome sequence of Annamia dubia, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity. J. Genomics, 12, Strain(s): 4383  PubMed: 38164507 DOI: 10.7150/jgen.87678 Tuji, A., Suzuki, S., Yamagishi, T., Yamaguchi, H. 2021 Alternative diatom strains for growth inhibition tests (OECD Test Guideline 201). Bull. Natl. Mus. Nat. Sci., Ser. B, 47, 183–192. Keywords: Fistulifera; Mayamaea permitis; Mayamaea pseudoterrestris sp., nov.; Mayamaea terrestris; Navicula pelliculosa; UTEX 664 Strain(s): 4280,  4281  DOI: 10.50826/bnmnsbot.47.4_183 Tuji, A., Yamaguchi, H., Kataoka, T., Sato, M., Sano, T., Niiyama, Y. 2021 Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria). Fottea, 21, 100-109. Strain(s): 4383  DOI: 10.5507/fot.2021.003 Turmel, M., Ehara, M., Otis, C., Lemieux, C. 2002a Phylogenetic relationships among streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences. J. Phycol., 38, 364-375. Keywords: Charophyceae; chloroplast rRNA genes; introns; land plants; phylogeny; Streptophyta Strain(s): 296,  484  DOI: 10.1046/j.1529-8817.2002.01163.x Turmel, M., Lemieux, C., Burger, G., Lang, B. F., Otis, C., Plante, I., Gray, M. W. 1999a The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae. Plant Cell, 11, 1717-1729. Strain(s): 484  PubMed: 10488238 DOI: 10.1105/tpc.11.91717 Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292. Keywords: prasinophyte green algae; Picocystis salinarum; chloroplast genome; mitochondrial genome; phylogenomic analyses; AUA codon reassignment Strain(s): 2755,  2758,  3669,  3835,  3849  PubMed: 30937436 DOI: 10.1093/gbe/evz074 Turmel, M., Otis, C., Lemieux, C. 1999b The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes. Proc. Nati. Acad. Sci. U. S. A., 96, 10248-10253. Strain(s): 484  PubMed: 10468594 DOI: 10.1073/pnas.96.18.10248 Turmel, M., Otis, C., Lemieux, C. 2002b The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants. Mol. Biol. Evol., 19, 24-38. Keywords: green aglae; Mesostigma viride;mitochondrial DNA; group I introns; group II introns; trans-splicing Strain(s): 296  PubMed: 11752187 DOI: 10.1093/oxfordjournals.molbev.a003979 Turmel, M., Otis, C., Lemieux, C. 2015 Dynamic evolution of the chloroplast genome in the Green algal classes Pedinophyceae and Trebouxiophyceae. Genome Biol. Evol., 7, 2062-2082. Keywords: Trebouxiophyceae; Pedinophyceae; plastid genomics, genome; rearrangements; inverted repeat; horizontal transfer; repeats; introns Strain(s): 1824  PubMed: 26139832 DOI: 10.1093/gbe/evv130 Turmel, M., Otis, C., Lemieux, C. 2020 Complete mitogenome of the chlorophyte green alga Marsupiomonas sp. NIES 1824 (Pedinophyceae). Mitochondrial DNA Part B-Resour. 5, 548-550. Keywords: Chlorophyta; variant genetic code; fragmented rnl gene; Pedinophyceae; phylogenomics Strain(s): 1824  DOI: 10.1080/23802359.2019.1710283 Ubekôsan Co. Ltd. 1988 Effects of UR-158 on the algal mortality [UR-158 no sassôkôka]. Unpublished report in Ubekôsan Co. Ltd, 3 pp. (in Japanese). Strain(s): 32,  227  Uchida, A., Nagasaki, K., Hiroishi, S., Ishida, Y. 1989 The application of monoclonal antibodies to an identification of Chattonella marina and Chattonella antiqua. Bull. Jpn. Soc. Sci. Fish., 55, 721-725. Strain(s): 3,  83,  86,  118,  121  Uchida, H., Kitae, K., Tomizawa, K., Yokota, A. 1998 Comparison of the nucleotide sequence and secondary structure of the 5.8S ribosomal RNA gene of Chlamydomonas tetragama with those of green algae. DNA Seq., 8, 403-408. Keywords: 5.8S ribosomal RNA gene; Chlamydomonas Strain(s): 446  PubMed: 10728826 DOI: 10.3109/10425179809020902 Ueda, H., Otsuka, S., Senoo, K. 2009 Community composition of bacteria co-cultivated with microalgae in non-axenic algal cultures. Microbiol. Cult. Coll., 25, 21-25. Keywords: algal-bacterial association; bacteria; community composition; culture collection; microalgae Strain(s): 329,  640,  864  Ueda, H., Otsuka, S., Senoo, K. 2010 Bacterial communities constructed in artificial consortia of bacteria and Chlorella vulgaris. Microbes Environ., 25, 36-40. Keywords: Chlorella vulgaris; algal-bacterial association; bacteria; co-cultivation; consortium Strain(s): 227  PubMed: 21576850 DOI: 10.1264/jsme2.ME09177 Ueda, K. & Nonaka, M. 1992 Division of chloroplasts in a green alga, Pediastrum duplex. Ann. Bot., 69, 113-118. Keywords: cell wall; chloroplast division; freeze-substitution; intermediate fibres; Pediastrum duplex; transmission electron microscopy Strain(s): 212  DOI: 10.1093/oxfordjournals.aob.a088315 Ueki, N., Matsunaga, S., Inouye, I., Hallmann, A. 2010 How 5000 independent rowers coordinate their strokes in order to row into the sunlight: Phototaxis in the multicellular green alga Volvox. BMC Biol., 8, 103 (article ID). Strain(s): 4029  PubMed: 20663212 DOI: 10.1186/1741-7007-8-103 Ueki, N., Wakabayashi, K. 2018 Detergent-extracted Volvox model exhibits an anterior–posterior gradient in flagellar Ca2+ sensitivity. Proc. Natl. Acad. Sci. U. S. A., 115, E1061-E1068 (article ID). Keywords: flagella; calcium; phototaxis; Volvox Strain(s): 4029  PubMed: 29311312 DOI: 10.1073/pnas.1715489115 Ukai, Y., Fujita, Y., Morimura, Y., Watanabe, A. 1958 Studies on growth of blue green alga Tolypothrix tenuis. J. Gen. Appl. Microbiol., 4, 163-169. Strain(s): 37  Umetani, I., Kunugi, M., Yokono, M., Takabayashi, A., Tanaka, A. 2018 Evidence of the supercomplex organization of photosystem II and light-harvesting complexes in Nannochloropsis granulata. Photosynth. Res., 136, 49-61. Keywords: Light-harvesting complex; Photosystem II; Nannochloropsis; CN–PAGE Strain(s): 2588  PubMed: 28856533 DOI: 10.1007/s11120-017-0438-z Umetsu, S., Kanda, M., Imai, I., Sakai, R., Fujita, M. J. 2019 Questiomycins, algicidal compounds produced by the marine bacterium Alteromonas sp. D and their production cue. Molecules, 24, 4522 (article ID). Keywords: Alteromonas; Chattonella antiqua; algicidal bacteria; harmful algal bloom; phenoxazinone antibiotics; questiomycins; red tide Strain(s): 1  PubMed: 31835604 DOI: 10.3390/molecules24244522 Unno, K., Ando, I., Hagima, N., Yokogaki, S. 1992 Growth delay and intracellular changes in Chlorella ellipsoidea C-27 as a result of deuteration. Plant Cell Physiol., 33, 963-969. Keywords: Chlorella ellipsoidea; deuterium oxide; growth delay; isotope effect; ultrastractural changes Strain(s): 2170  DOI: 10.1093/oxfordjournals.pcp.a078348 Urrejola, C., Alcorta, J., Salas, L., Vásquez, M., Polz, M. F., Vicuña, R., Díez, B. 2019 Genomic features for desiccation yolerance and sugar biosynthesis in the extremophile Gloeocapsopsis sp. UTEX B3054. Front. Microbiol., 10, 950 (article ID). Keywords: Atacama Desert; compatible solutes; cyanobacteria; desiccation tolerance; DNA extraction; exopolysaccharide; glycosyltransferase; trehalose Strain(s): 1031  PubMed: 31134010 DOI: 10.3389/fmicb.2019.00950 Utsunomiya, A., Watanuki, T., Matsushita, K., Nishina, M., Tomita, I 1997 Assessment of the toxicity of linear alkylbenzene sulfonate and quaternary alkylammonium chloride by measuring 13C-glycerol in Dunaliella sp. Chemosphere, 35, 2479-2490. Keywords: Surfactant; Toxicity; LAS; Quaternary ammonium chloride; Glycerol; 13C-glycerol; Dunaliella sp; 13C-NMR; EC50-24h Strain(s): 3744  DOI: 10.1016/S0045-6535(97)00316-0 Utsunomiya, A., Watanuki, T., Matsushita, K., Tomita, I 1997 Toxic effects of linear alkylbenzene sulfonate, quaternaryalkylammonium chloride and their complexes on Dunaliella sp. and Chlorella pyrenoidosa. Environ. Toxicol. Chem., 16, 1247-1254. Keywords: Linear alkylbenzene sulfonate; Cationic surfactant; Complex Dunaliella Chlorella Strain(s): 3744  DOI: 10.1002/etc.5620160621 Uye, S. & Takamatsu, K. 1990 Feeding inter-actions between planktonic copepods and red-tide flagellates from Japanese coastal waters. Mar. Ecol. Prog. Ser., 59, 97-107. Strain(s): 12,  15,  221,  235,  251  Valadez-Cano, C., Hawkes, K., Calvaruso, R., Reyes-Prieto, A., Lawrence, J. 2022 Amplicon-based and metagenomic approaches provide insights into toxigenic potential in understudied Atlantic Canadian lakes Facets, 7, 194-214. Keywords: Toxic cyanobacteria; toxic blooms, cyanotoxins; microcystin; Microcystis aeruginosa; bioactive metabolites Strain(s): 843,  2549  DOI: 10.1139/facets-2021-0109 Van Wichelen, J., D'hondt, S., Claeys, M., Vyverman, W., Berney, C., Bass, D., Vanormelingen, P. 2016 A hotspot of amoebae diversity: 8 new naked amoebae associated with the planktonic bloom-forming cyanobacterium Microcystis. Acta Protozool., 55, 61-87. Keywords: Naked amoebae; Microcystis; morphology; 18S rDNA; harmful algal blooms; grazing; Europe Strain(s): 3722,  3723,  3725,  3726,  3729,  3730,  3766,  3767  DOI: 10.4467/16890027AP.16.007.4942 Van Wichelen, J., Van Gremberghe, I., Vanormelingen, P., Debeer, A-E., Leporcq, B., Menzel, D., Codd, G. A., Descy, J-P., Vyverman, W. 2010 Strong effects of amoebae grazing on the biomass and genetic structure of a Microcystis bloom (Cyanobacteria). Environ. Microbiol., 12, 2797-2813. Strain(s): 3722,  3726,  3730,  3766  PubMed: 20545742 DOI: 10.1111/j.1462-2920.2010.02249.x Van Wichelen, J., Van Gremberghe, I., Vanormelingen, P., Vyverman.,W. 2012 The importance of morphological versus chemical defences for the bloom-forming cyanobacterium Microcystis against amoebae grazing. Aquat. Ecol., 46, 73-84. Keywords: Microcystis; Amoebae; Grazing; Cyanobacteria; Biochemicals; Colony morphology Strain(s): 3726,  3730  DOI: 10.1007/s10452-011-9382-8 Van Winkle-Swift, K. P., Aliaga, G. R., Pommerville, J. C. 1987 Haploid spore formation following arrested cell fusion in Chlamydomonas (Chlorophyta). J. Phycol., 23, 414-427. Keywords: cell fusion; Chlamydomonas monoica; germination; karyogamy; maturation; mutant; nuclear migration; sporulation; zygospore Strain(s): 2229  DOI: 10.1111/j.1529-8817.1987.tb02527.x van Zee, M., de Rutte, J., Rumyan, R., Williamson, C., Burnes, T., Radakovits, R., Eugenio, A. S., Badih, S., Lee, S., Lee, D.-H., Archang, M., Di Carlo, D. 2022 High-throughput selection of cells based on accumulated growth and division using PicoShell particles. Proc. Natl. Acad. Sci. U. S. A., 119, e2109430119 (article ID). Strain(s): 48  PubMed: 35046027 DOI: 10.1073/pnas.2109430119 Vande Berg, W.J., Starr, R.C. 1971 Structure, reproduction and differentiation in Volvox gigas and Volvox powersii. In Archiv für Protistenkunde, 113, pp. 195-219. Strain(s): 4127  Velichko, N. V., Emelijanova, M. S., Averina, S. G., Pinevich, A. A., Pinevich, A. V. 2018 Taxonomic attribution of “Oscillatoriales” strains within the bacteriological system of cyanobacteria: Identification algorithm for operational genera. Microbiology, , 393-406. Keywords: “Oscillatoriales” cyanobacteria; polyphasic taxonomy; form-genus; PCC type strains; 16S rRNA gene sequencing; HIP1 fingerprinting Strain(s): 3735  DOI: 10.1134/S0026261718030141 Velmurugan, A. & Muthukaliannan, G. K. 2023 Homologous and heterologous expression of phytoene synthase gene in marine microalgae Dunaliella salina and its potential as aquaculture feed. Aquac. Int., 31, 3125–3144. Keywords: Dunaliella salina; Phytoene synthase; Overexpression; Electroporation; β-carotene Strain(s): 144  DOI: 10.1007/s10499-023-01195-4 Villanueva, E. M. F. et al. 2022 Protist.guru: A Comparative Transcriptomics Database for Protists. J. Mol. Biol., 434, 167502 (article ID). Strain(s): 144  PubMed: 35389344 DOI: 10.1016/j.jmb.2022.167502 Wacklin, P., Hoffmann, L., Komárek, J. 2009 Nomenclatural validation of the genetically revised cyanobacterial genus Dolichospermum (Ralfs ex Bornet et Flahault) comb. nova. Fottea, 9, 59-64. Keywords: Cyanobacteria; Anabaena; Dolichospermum; taxonomy; nomenclatoric validation Strain(s): 81  Wada, H., Hirasawa, R., Omata, T., Murata, N. 1984 The lipid phase of thylakoid and cytoplasmic membranes from the blue-green algae (cyanobacteria), Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 25, 907-911. Strain(s): 2093,  3277  DOI: 10.1093/oxfordjournals.pcp.a076805 Wada, M., Hara, Y., Kato, M., Yamada, M., Fujii, T. 1987 Diurnal appearance, fine structure, and chemical composition of fatty particles in Heterosigma akashiwo (Raphidophyceae). Protoplasma, 137, 134-139. Strain(s): 6  DOI: 10.1007/BF01281148 Wada, M., Satoh, S., Kasamo, k., Fujii, T. 1989 Presence of a Na+-activated ATPase in the plasma membrane of the marine raphidophycean Heterosigma akashiwo. Plant Cell Physiol., 30, 923-928. Keywords: ATPase; Heterosigma akashiwo; plasma membrane; sodium ion Strain(s): 6  DOI: 10.1093/oxfordjournals.pcp.a077826 Wada, M., Urayama, O., Satoh, S., Hara, Y., Ikawa, Y., Fujii, T. 1992 A marine algal Na+-activated ATPase possesses an immunologically identical epitope to Na+, K+-ATPase. FEBS Lett., 309, 272-274. Keywords: Akashiwo; Na+-ATPase; Na+, K+-ATPase; epitope mapping; antibody Strain(s): 6  Wada, Y., Yokotera, H., Yamazaki, K., Toyonaga, K. 2004 Study on the multiply capability of phytoplankton at the artificial repetition on blight and dark condition. Advance in River Engineering, Vol.10, 465-470 (in Japanese with English summary). Keywords: destratification system; multiply capability; blight and dark condition; Microcystis; algal growth potential; record of light shield Strain(s): 44  Wagstaff, B. A., Rejzek, M., Kuhaudomlarp, S., Hill, L., Mascia, I., Nepogodiev, S. A., Dorfmueller, H. C., Field, R. A. 2019 Discovery of an RmlC/D fusion protein in the microalga Prymnesium parvum and its implications for NDP-β-L-rhamnose biosynthesis in microalgae. J. Biol. Chem., 294, 9172-9185. Strain(s): 381  PubMed: 31010825 DOI: 10.1074/jbc.RA118.006440 Wakahama, T., Laza-Martínez, A., Mohd Taha., A.I.B.H., Okuyama, H., Yoshida, K., Kogame, K., Awai, K., Kawachi, M., Maoka, T., Takaichi, S. 2012 Structural confirmation of a unique carothenoid lactoside, P457, in Symbiodinium sp. strain NBRC 104787 isolated from a sea anemone and ITS distribution in dinoflagellates and various marine organisms. J. Phycol., 48, 1392-1402. Keywords: carotenoid; dinoflagellates; P457; peridinin; Symbiodinium; symbiosis Strain(s): 48,  1409,  2638,  2639,  2640,  2642,  2746  PubMed: 27009990 DOI: 10.1111/j.1529-8817.2012.01219.x Wakasugi, T., Nagai, T., Kapoor, M., Sugita, M., Ito, M., Ito, S., Tsudzuki, J., Nakashima, K., Tsudzuki, T., Suzuki, Y., Hamada, A., Ohta, T., Inamura, A., Yoshinaga, K., Sugiura, M. 1997 Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division. Proc. Natl. Acad. Sci. U. S. A., 94, 5967-5972. Keywords: DNA sequence; evolution; gene map; minD; rpoA Strain(s): 2170  PubMed: 9159184 DOI: 10.1073/pnas.94.11.5967 Wakeman, K. C., Yamaguchi, A., Roy, M. C., Jenke-Kodama, H. 2015 Morphology, phylogeny and novel chemical compounds from Coolia malayensis (Dinophyceae) from Okinawa, Japan. Harmful Algae, 44, 8-19. Keywords: Coolia malayensis; Cooliatoxin; High-resolution MS; Morphology; NanoLC/MS; Molecular phylogeny Strain(s): 3637  DOI: 10.1016/j.hal.2015.02.009 Wakisaka, Y., Suzuki, Y., Iwata, O., Nakashima, A., Ito, T., Hirose, M., Domon, R., Sugawara, M., Tsumura, N., Watarai, H., Shimobaba, T., Suzuki, K., Goda, K., Ozeki, Y. 2016 Probing the metabolic heterogeneity of live Euglena gracilis with stimulated Raman scattering microscopy. Nature Microbiology, 1, 16124 (article ID). Strain(s): 48  PubMed: 27670110 DOI: 10.1038/nmicrobiol.2016.124 Wan, J.-K., Chu, W.-L., Kok, Y.-Y., Lee, C.-S. 2021 Influence of polystyrene microplastic and nanoplastic on copper toxicity in two freshwater microalgae. Environ. Sci. Pollut. Res., 28, 33649–33668. Keywords: Microplastic; Nanoplastic; Copper; Chlorella; Pseudokirchneriella subcapitata; Combined toxicity; Adsorption Strain(s): 35  PubMed: 33646549 DOI: 10.1007/s11356-021-12983-x Wan, M., Hou, D., Li, Y., Fan, J., Huang, J., Liang, S., Wang, W., Pan, R., Wang, J., Li, S. 2014 The effective photoinduction of Haematococcus pluvialis for accumulating astaxanthin with attached cultivation. Bioresour. Technol., 163, 26-32. Keywords: Haematococcus pluvialis; Astaxanthin; Biomass; Attached cultivation; Photoinduction Strain(s): 144  PubMed: 24787315 DOI: 10.1016/j.biortech.2014.04.017 Wan, M., Zhang, Z., Wang, R., Bai, W., Huang, J., Wang, W., Shen, G., Yu, A., Li, Y. 2019 High-yield cultivation of Botryococcus braunii for biomass and hydrocarbons. Biomass Bioenerg., 131, 105399 (article ID). Keywords: Botryococcus braunii; Hydrocarbon; Heterotrophy; Photoautotrophy Strain(s): 836  DOI: 10.1016/j.biombioe.2019.105399 Wang, C., Wang, Z., Luo, F., Li, Y. 2017 The augmented lipid productivity in an emerging oleaginous model alga Coccomyxa subellipsoidea by nitrogen manipulation strategy. World J. Microbiol. Biotechnol., 33, 160 (article ID). Keywords: Coccomyxa subellipsoidea; Nitrogen manipulation; Lipid; Fatty acids; Metabolites Strain(s): 2166  PubMed: 28752265 DOI: 10.1007/s11274-017-2324-4 Wang, H., Munke, A., Li, S., Tomaru, Y., Okamoto, K. 2022 Structural insights into common and host-specific receptor-binding mechanisms in algal picorna-like viruses. Viruses-Basel, 14, 2369 (article ID). Keywords: Marnaviridae; algal bloom; algal viruses; icosahedral viruses; ssRNA viruses Strain(s): 3713  PubMed: 36366467 DOI: 10.3390/v14112369 Wang, K. & Mou, X. 2021 Coordinated diel gene expression of cyanobacteria and their microbiome. Microorganisms, 9, 1670 (article ID). Keywords: Microcystis; cyanobacterial blooms; diel transcription; microbiome Strain(s): 843  PubMed: 34442749 DOI: 10.3390/microorganisms9081670 Wang, L. 2018 Structural characterisation of Histidine Kinase 2. PhD thesis, Queen Mary University of London, U.K., 214 pp. Strain(s): 843  DOI: 10.1111/pre.12203 Wang, L., Yamano, T., Kajikawa, M., Hirono, M., Fukuzawa, H. 2014 Isolation and characterization of novel high-CO2-requiring mutants of Chlamydomonas reinhardtii. Photosynth. Res., 121, 175-184. Keywords: Chlamydomonas reinhardtii; Carbon-concentrating mechanism; CO2-signal transduction; High-CO2-requiring mutants Strain(s): 2235  PubMed: 24549931 DOI: 10.1007/s11120-014-9983-x Wang, Q., Shen, Q., Wang, J., Zhao, J., Zhang, Z., Lei, Z., Yuan, T., Shimizu, K., Liu, Y., Lee, D.-J. 2022 Insight into the rapid biogranulation for suspended single-cell microalgae harvesting in wastewater treatment systems: Focus on the role of extracellular polymeric substances. Chem. Eng. J., 430, 132631 (article ID). Strain(s): 2195  DOI: 10.1016/j.cej.2021.132631 Wang, Q., Yang, Y., Shen, Q., Chen, X., Li, F., Wang, J., Zhang, Z., Lei, Z., Yuan, T., Shimizu, K. 2022 Energy saving and rapid establishment of granular microalgae system from tiny microalgae cells: Effect of decrease in upflow air velocity under intermittent aeration condition. Bioresour. Technol., 363, 127860 (article ID). Keywords: Microalgae biogranulation; Settleability; Upflow air velocity; Nutrients removal; Energy efficiency Strain(s): 2195  PubMed: 36041681 DOI: 10.1016/j.biortech.2022.127860 Wang, Y., Chiu, SY., Ho, SH., Liu, Z., Hasunuma, T., Chang, TT., Chang, KF., Chang, JS., Ren NQ., Kondo, A. 2016 Improving carbohydrate production of Chlorella sorokiniana NIES-2168 through semi-continuous process coupled with mixotrophic cultivation. Biotechnol. J., 11, 1072–1081. Keywords: Carbohydrate; Chlorella; Fed-batch; Mixotrophic cultivation; Semi-continuous process Strain(s): 2168  PubMed: 27312599 DOI: 10.1002/biot.201500270 Wang, Y., Seppänen-Laakso, T., Rischer, H., Wiebe, M. G. 2018 Euglena gracilis growth and cell composition under different temperature, light and trophic conditions. PLoS One, 13, e0195329 (article ID). Strain(s): 48  PubMed: 29649233 DOI: 10.1371/journal.pone.0195329 Wang, Z., Gui, H., Luo, Z., Zhen, Z., Yan, C., Xing, B. 2019 Dissolved organic phosphorus enhances arsenate bioaccumulation and biotransformation in Microcystis aeruginosa. Environ Pollut., 252, 1755-1763. Keywords: Arsenate; Subcellular distribution; Functional gene; Organic phosphorus; Algae Strain(s): 843  PubMed: 31295694 DOI: 10.1016/j.envpol.2019.06.126 Ward, C. J., Beattie, K. A., Lee, E. Y. C., Codd, G. A. 1997 Colorimetric protein phosphatase inhibition assay of laboratory strains and natural blooms of cyanobacteria: comparisons with high-performance liquid chromatographic analysis for microcystins. FEMS Mircobiol. Lett., 153, 465-473. Keywords: Microcystin; Protein phosphatase; Cyanobacteria; High-performance liquid chromatography Strain(s): 42,  102,  103,  104,  298,  595  PubMed: 9271876 DOI: 10.1111/j.1574-6968.1997.tb12611.x Watanabe, A. 1959 Distribution of nitrogen-fixing blue-green algae in various areas of south and east Asia. J. Gen. Appl. Microbiol., 5, 21-29. Strain(s): 22,  37  DOI: 10.2323/jgam.5.21 Watanabe, A. 1959 On the mass-culturing of a nitrogen-fixing blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 5, 85-91. Strain(s): 37  Watanabe, A. 1960 List of algal strains in collection at the Institute of Applied Microbiology, University of Tokyo. J. Gen. Appl. Microbiol., 6, 283-292. Strain(s): 19,  21,  22,  23,  24,  25,  26,  28,  29,  37,  47,  49,  226,  227  Watanabe, A. 1962 Effect of nitrogen-fixing blue-green alga: Tolypothrix tenuis on the nitrogenous fertility of paddy soil and on the crop yield of rice plant. J. Gen. Appl. Microbiol., 8, 85-91. Strain(s): 37  Watanabe, A. & Yamamoto, Y. 1967 Heterotrophic nitrogen fixation by the blue-green alga Anabaenopsis circularis. Nature, 214, 738 Strain(s): 21  DOI: 10.1038/214738a0 Watanabe, A. & Yamamoto, Y. 1968 Effects of antibiotics on the growth of microalgae. Phykos, 7, 248-258. Strain(s): 19,  37  Watanabe, A., Hattori, A., Fujita, Y., Kiyohara, T. 1959 Large scale culture of a blue-green alga, Tolypothrix tenuis, utilizing hot spring and natural gas as heat and carbon dioxide sources. J. Gen. Appl. Microbiol., 5, 51-57. Strain(s): 37  Watanabe, A., Ito, R., Sasa, T. 1955 Effect of various chemicals upon the growth of daphnids. J. Gen. Appl. Microbiol., 1, 190-193. Strain(s): 37  Watanabe, A., Ito, R., Sasa, T. 1955 Micro-algae as a source of nutrients for daphnids. J. Gen. Appl. Microbiol., 1, 137-141. Strain(s): 37  Watanabe, A., Shirota, M., Endo, H., Yamamoto, Y. 1969 An observation of the practical applications of nitrogen fixing blue-green algae for rice cultivation. In The Third International Conference on the Global Impacts of Applied Microbiology, Bombay, pp. 53-64. Strain(s): 37  Watanabe, F., Miyamoto, E., Nakano, Y. 2001 Inactive corrinoid-compound significantly decreases in Spirulina platensis grown in a cobalt-deficient medium. J. Agric. Food Chem., 49, 5685-5688. Keywords: Vitamin B12; pseudovitamin B12; algal health food; spirulina tablet; intrinsic facto Strain(s): 39  PubMed: 11714378 DOI: 10.1021/jf010733i Watanabe, H., Nakajima, F., Kasuga, I., Furumai, H. 2011 Toxicity evaluation of road dust in the runoff process using a benthic ostracod Heterocypris incongruens. Sci. Total Environ., 409, 2366-2372. Keywords: road dust; toxicity; benthic ostracod; runoff process; solid/liquid ratio; holding time; water phase; solid phase Strain(s): 94  PubMed: 21458026 DOI: 10.1016/j.scitotenv.2011.03.001 Watanabe, H., Nakajima, F., Kasuga, I., Furumai, H. 2013 Application of whole sediment toxicity identification evaluation proceduresto road dust using a benthic ostracod Heterocypris incongruens. Ecotox. Environ. Safe., 89, 245-251. Keywords: Road dust; Ostracod; Toxicity identification evaluation; Adsorbent Strain(s): 94  PubMed: 23294638 DOI: 10.1016/j.ecoenv.2012.12.003 Watanabe, H., Tamura, I., Abe, R. Takanobu, H., Nakamura, A., Suzuki, T., Hirose, A., Nishimura, T., Tatarazako, N. 2016 Chronic toxicity of an environmentally relevant mixture of pharmaceuticals to three aquatic organisms (alga, daphnid, and fish). Environ. Toxicol. Chem., 35, 996-1006. Keywords: Mixture toxicity; Pharmaceutical; Short-term chronic toxicity test; Concentration addition; Independent action Strain(s): 35  PubMed: 26472177 DOI: 10.1002/etc.3285 Watanabe, K. I., Ehara, M., Inagaki, Y., Ohama, T. 1998 Distinctive origins of group I introns found in the COXI genes of three green algae. Gene, 213, 1-7. Keywords: Group I intron; Chlorella vulgaris; Scenedesmus quadricauda; Protosiphon botryoides; cytochrome c oxidase subunit I; intron homing; frameshift Strain(s): 96,  227  DOI: 10.1016/S0378-1119(98)00235-2 Watanabe, M. 1977 A preliminary study of Gonium viridistellatum sp. nov. (Chlorophyta, Volvocaceae). Bull. Jpn. Soc. Phycol., 25, Suppl. (Mem. Iss. Yamada), 379-384. Strain(s): 288,  289,  290  Watanabe, M. 1978 A taxonomic study of the Closterium calosporum complex (1). Bull. Natn. Sci. Mus., Ser. B (Bot.), 4, 133-154, pls. 1-8. Strain(s): 163,  164,  165,  168,  171,  186,  187,  188,  189,  191,  192,  193,  194,  197,  339,  341  Watanabe, M. 1979 A taxonomic study of the Closterium calosporum complex (2). Bull. Natn. Sci. Mus., Ser. B (Bot.), 5, 1-23, pls. 9-11. Strain(s): 163,  164,  165,  168,  186,  187,  188,  189,  191,  192,  194,  197,  339,  340,  341  Watanabe, M. 1982 The diurnal variations in the cell densities of Olisthodiscus luteus and Skeletonema costatum. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 143-154 (in Japanese with English summary). Strain(s): 6  Watanabe, M. 1996 Isolation, cultivation and classification of bloom-forming Microcystis in Japan. In Toxic Microcystis, Eds. by Watanabe, M.F., Harada, K., Carmichael W.W. & Fujii, H., CRC Press, Boca Raton, pp. 13-34. Strain(s): 1050,  1051,  1052,  1053,  1054,  1061,  1063,  1064,  1065,  1066,  1067,  1068,  1070,  1071,  1072,  1074,  1075,  1076,  1077,  1079,  1080,  1081,  1082,  1083,  1085,  1086,  1087,  1088,  1089,  1090,  1093,  1095,  1097,  1098,  1099,  1105,  1107,  1108,  1109,  1110,  1113,  1115,  1116,  1117,  1122,  1124,  1125,  1126,  1127,  1130,  1132,  1133,  1134,  1139,  1140,  1141,  1142,  1146,  1147,  1149,  1152,  1153,  1154,  1155,  1157,  1159,  1160,  1161,  1162,  1163,  1164,  1173,  1178,  1182,  1183,  1184,  1187,  1189,  1194,  1196,  1198,  1200,  1203,  1205,  1206,  1209,  1213,  1216,  1219,  1222,  1225,  1230,  1232,  1234,  1237,  1239,  1241,  1243,  1246  Watanabe, M. 1998 Studies on planktonic blue-green algae 8. Anabaena species with twisted trichomes in Japan. Bull. Natn. Sci. Mus., Tokyo, Ser. B, 24(1), 1-13. Keywords: Anabaena; plankton; blue-green algae; Cyanophyta; taxonomy Strain(s): 1652  Watanabe, M. & Harashima, A. 1982 Bio-convection in culture of Olisthodiscus luteus and Rayleigh-Taylor instability. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 155-173 (in Japanese with English summary). Strain(s): 6  Watanabe, M. & Harashima, A. 1982 The distribution pattern of Olisthodiscus luteus in convection cells. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 175-190 (in Japanese with English summary). Strain(s): 6  Watanabe, M. F. 1994 Cultivation of toxic blue-green algae [Yûdoku-ransô no baiyô]. In Waterbloom of Blue-green Algae and Their Toxins [Aoko, sono shutsugen to dokuso], Eds. by Watanabe, M. F., Harada,K. & Fujii, H., University of Tokyo Press, pp. 101-116 (in Japanese). Strain(s): 1059,  1091  Watanabe, M. F. 1996 Production of microcystins. In Toxic Microcystis, Eds. by Watanabe, M. F., Harada, K., Carmichael W. W. & Fujii, H., CRC Press, Boca Raton, pp. 35-56. Strain(s): 1053,  1054,  1059,  1061,  1063,  1064,  1066,  1067,  1068,  1070,  1071,  1072,  1074,  1076,  1077,  1079,  1081,  1083,  1085,  1086,  1090,  1091,  1093,  1095,  1097,  1098,  1099,  1140  Watanabe, M. F. & Watanabe, M. 1994 Bloom-forming cyanophytes and their toxins [Aoko wo tsukuru ransô to sono dokuso]. Mizu, 36, 24-29 (in Japanese). Strain(s): 1064,  1066,  1070,  1071,  1077,  1086,  1093,  1095,  1099  Watanabe, M. F., Harada, K-I., Matsuura, K., Watanabe, M., Suzuki, M. 1989 Heptapeptide toxin production during the batch culture of two Microcystis species (Cyanobacteria). J. Appl. Phycol., 1, 161-165. Strain(s): 3349  DOI: 10.1007/BF00003879 Watanabe, M. F., Oishi, S., Harada, K-I., Matsuura, K., Kawai, H., Suzuki, M. 1988 Toxins contained in Microcystis species of cyanobacteria (blue-green algae). Toxicon, 26, 1017-1025. Strain(s): 103,  112,  1059,  1084,  3349  PubMed: 3149802 DOI: 10.1016/0041-0101(88)90200-0 Watanabe, M. F., Oishi, S., Watanabe, Y., Watanabe, M. 1986 Strong probability of lethal toxicity in the blue-green alga Microcystis viridis Lemmermann. J. Phycol., 22, 552-556. Strain(s): 98,  100,  101,  103,  112,  298,  1053,  1054,  1055,  1058,  1059,  1067,  1091  DOI: 10.1111/j.1529-8817.1986.tb02502.x Watanabe, M. F., Tsuji, K., Watanabe, Y., Harada, K-I., Suzuki, M. 1999 Release of heptapeptide toxin (microcystin) during the decomposition process of Microcystis aeruginosa. Natural Toxins, 1, 48-53. Keywords: Blue-green algae; Cyanobacteria; Heterotrophic bacteria; Aerobic decomposition Strain(s): 3349  DOI: 10.1002/nt.2620010110 Watanabe, M. F., Watanabe, M., Kato, T., Harada, K., Suzuki, M. 1991 Composition of cyclic peptide toxins among strains of Microcystis aeruginosa (blue-green algae, Cyanobacteria). Bot. Mag. Tokyo, 104, 49-57. Keywords: blue-green algae; cyanobacteria; cyclic peptide; Microcystis; strain; toxin Strain(s): 1053,  1054,  1060,  1061,  1063,  1064,  1066,  1067,  1068,  1070,  1071,  1072,  1074,  1076,  1077,  1079,  1080,  1081,  1083,  1085,  1086,  1090,  1093,  1095,  1097,  1098,  1099,  1140,  1142,  3349  DOI: 10.1007/BF02493403 Watanabe, M. M. 1977 Biosystematics in Closterium of sexual unicellular green algae and Calothrix and Spirulina of asexual filamentous blue-green algae, with special reference to the analyses of natural populations. Thesis D. Sci., Hokkaido University, 114 pp., 28 tables, 54 figs. Strain(s): 39,  45,  46,  51,  52,  53,  54,  55,  56,  58,  59,  60,  61,  62,  63,  64,  65,  66,  67,  68,  69,  70,  261,  262,  266,  268  Watanabe, M. M. 1989 Toxicity of algae [Sôrui no dokusei]. Jpn. J. Water Poll. Res., 12, 750-756 (in Japanese). Strain(s): 102  Watanabe, M. M. & Ichimura, T. 1977 Fresh- and salt-water forms of Spirulina platensis in axenic cultures. Bull. Jpn. Soc. Phycol., 25, Suppl. (Mem. Iss. Yamada), 371-377. Strain(s): 39,  45,  46  Watanabe, M. M. & Ichimura, T. 1978 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. II. Reproductive isolation and morphological variation among several populations from the Northern Kanto area in Japan. Bot. Mag. Tokyo, 91, 1-10. Strain(s): 51,  52,  53,  54,  55,  56,  58,  59,  60,  61,  62,  63,  64,  65,  69,  70,  261  Watanabe, M. M. & Ichimura, T. 1978 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. III. Degrees of sexual isolation among the three population groups from the Northern Kanto area. Bot. Mag. Tokyo, 91, 11-24. Strain(s): 51,  52,  53,  54,  55,  56,  58,  59,  60,  61,  62,  63,  64,  65,  69,  70,  261  DOI: 10.1007/BF02489099 Watanabe, M. M. & Ichimura, T. 1982 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. IV. Hybrid breakdown between two closely related groups, Group II-A and Group II-B. Bot. Mag. Tokyo, 95, 241-247. Keywords: Closterium; fertility; hybrid breakdown; post-zygotic isolating mechanism; viability Strain(s): 51,  52,  53,  64,  65  DOI: 10.1007/BF02488536 Watanabe, M. M. & Kurogi, M. 1975 Taxonomic reexamination of the two species of blue-green algae, Calothrix scopulorum and C. crustacea. Bot. Mag. Tokyo, 88, 111-125. Strain(s): 266,  268  DOI: 10.1007/BF02491246 Watanabe, M. M. & Nakamura, Y. 1984 Growth characteristics of a red tide flagellate, Heterosigma akashiwo Hada. 1. The effects of temperature, salinity, light intensity and pH on growth. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 51-58 (in Japanese with English summary). Strain(s): 6  Watanabe, M. M. & Nakamura, Y. 1984 Growth characteristics of a red tide flagellate, Heterosigma akashiwo Hada. 2. The utilization of nutrients. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 59-68 (in Japanese with English summary). Strain(s): 6  Watanabe, M. M. & Sawaguchi, T. 1995 Cryopreservation of a water-bloom forming cyanobacterium, Microcystis aeruginosa f. aeruginosa. Phycol. Res., 43, 111-116. Keywords: cryopreservation; DMSO; Microcystis aeruginosa f. aeruginosa; rapid cooling; two step cooling Strain(s): 44,  90  DOI: 10.1111/j.1440-1835.1995.tb00012.x Watanabe, M. M., Kasai, F., Hiwatari, T., Suda, S., Nei, T. 1984 Cryopreservation of microalgae in liquid nitrogen - Survival of algal cultures after freezing. Jpn. J. Freez. Dry., 30, 23-26 (in Japanese with English title). Strain(s): 18,  19,  21,  24,  26,  29,  31,  39,  40,  41,  44,  45,  46,  50,  73,  74,  75,  76,  77,  80,  81,  87,  88,  89,  90,  91,  93,  95,  98,  99,  100,  101,  120,  122,  131,  135,  137,  144,  151,  204,  207,  213,  257,  263,  379,  415,  2219,  2235,  2239,  2579  Watanabe, M. M., Kohata, K., Nakamura, Y., Watanabe, M. 1982 Phosphate-limited continuous culture of a red tide flagellate, Olisthodiscus luteus: establishment of its method and the analysis of growth kinetics. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 113-130 (in Japanese with English summary). Strain(s): 6  Watanabe, M. M., Nakamura, Y., Kohata, K. 1983 Diurnal vertical migration and dark uptake of nitrate and phosphate of the red tide flagellates, Heterosigma akashiwo Hada and Chattonella antiqua (Hada) Ono (Raphidophyceae). Jpn. J. Phycol. (Sôrui), 31, 161-166. Keywords: Chattonella antiqua; diurnal vertical migration; Heterosigma akashiwo; nitrate and phosphate uptakes; red tide Strain(s): 1,  6  Watanabe, M. M., Nakamura, Y., Kohata, K. 1984 Diurnal vertical migration of a red tide flagellate, Heterosigma akashiwo Hada, with special reference to the ecological role. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 69-77 (in Japanese with English summary). Strain(s): 6  Watanabe, M. M., Nakamura, Y., Mori, S., Yamochi, S. 1982 Effects of physico-chemical factors and nutrients on the growth of Heterosigma akashiwo Hada from Osaka Bay, Japan. Jpn. J. Phycol. (Sôrui), 30, 279-288. Keywords: growth rate; Heterosigma akashiwo; minimum cell quota; Raphidophyceae; red tide Strain(s): 6  Watanabe, M. M., Suda, S., Kasai, F., Sawaguchi, T. 1985 Axenic cultures of the three species of Microcystis (Cyanophyta = Cyanobacteria). Bull. JFCC, 1, 57-63. Strain(s): 89,  102,  107,  111,  298  Watanabe, M. M., Yamochi, S., Kohata, K., Watanabe, M. 1982 Vertical migration and diel periodicity of phosphate uptake in a red tide flagellate, Olisthodiscus luteus. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 131-141 (in Japanese with English summary). Strain(s): 6  Watanabe, M., Kohata, K., Kunugi, M. 1987 31P nuclear magnetic resonance study of intracellular phosphate pools and polyphosphate metabolism in Heterosigma akashiwo (Hada) Hada (Raphidophyceae). J. Phycol., 23, 54-62. Keywords: cell extraction; Heterosigma akashiwo; intracellular phosphate; phosphodiester; 31P-NMR; polyphosphate; Raphidophyceae; sugar-phosphate Strain(s): 6  DOI: 10.1111/j.1529-8817.1987.tb04426.x Watanabe, M., Kohata, K., Kunugi, M. 1987 Diel vertical migration of Heterosigma akashiwo under salinity and phosphate stratifications and metabolism of intracellular phosphate pools. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 103-114 (in Japanese with English summary). Strain(s): 6  Watanabe, M., Kohata, K., Kunugi, M. 1988 Phosphate accumulation and metabolism by Heterosigma akashiwo (Raphidophyceae) during diel vertical migration in a stratified microcosm. J. Phycol., 24, 22-28. Keywords: ATP; diel vertical migration; Heterosigma akashiwo; intracellular phosphate; 31P-NMR; phosphate accumulation; polyphosphates; Raphidophyceae; salinity and nutrient stratifications Strain(s): 6  DOI: 10.1111/j.1529-8817.1988.tb04452.x Watanabe, M., Kubota, H., Wada, H., Narikawa, R., Ikeuchi, M. 2011 Novel supercomplex organization of PSI in Anabaena and Cyanophora paradoxa. Plant Cell Physiol., 52, 162-168. Keywords: Anabaena; blue-native PAGE; Cyanophora paradoxa; PSI; supercomplex Strain(s): 547  PubMed: 21118826 DOI: 10.1093/pcp/pcq183 Watanabe, M., Niiyama, Y., Tuji, A. 2004 Studies on planktonic blue-green algae 10. Classification of planktonic Anabaena with coiled trichomes maintained in the National Science Mueum, Tokyo. Bull. Natn. Sci. Mus., Tokyo, Ser. B, 30(4), 135-149. Keywords: morphology; taxonomy; planktonic; Anabaena; strains; culture; blue-green algae; Japan Strain(s): 1645,  1647,  1650,  1656,  1659,  1662,  1663,  1677,  1679,  1684,  1690,  1693,  1695,  1696  Watanabe, M., Sato, M., Kondo, K., Narikawa, R., Ikeuchi, M. 2012 Phycobilisome model with novel skeleton-like structures in a glaucocystophyte Cyanophora paradoxa. Biochim. Biophys. Acta-Bioenerg., 1817, 1428-1435. Keywords: Antenna; Cyanophora paradoxa NIES 547; Glaucocystophyte; Linker protein; Phycobilisome, skeleton-like model Strain(s): 547  PubMed: 22172737 DOI: 10.1016/j.bbabio.2011.11.013 Watanabe, M., Takamatsu, T., Kohata, K., Kunugi, M., Kawashima, M., Koyama, M. 1989 Luxury phosphate uptake and variation of intracellular metal concentrations in Heterosigma akashiwo (Raphidoohyceae). J. Phycol., 25, 428-436. Keywords: ESR; Heterosigma akashiwo; intracellular metals; luxury phosphate uptake; neutron activation analysis; polyphosphate; 31P-NMR Strain(s): 6  DOI: 10.1111/j.1529-8817.1989.tb00247.x Watanabe, M., Watanabe, M. M., Kohata, K., Harashima, A. 1982 The use of a controlled experimental ecosystem (Microcosm) in studies of the mechanism of red tide outbreaks. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 11-26 (in Japanese with English summary). Strain(s): 6  Watanabe, S. 1981 Observations on Urnella terrestris Playfair (Chlorophyceae, Chlorococc-ales) in culture. Phycologia, 20, 12-15. Strain(s): 156  DOI: 10.2216/i0031-8884-20-1-12.1 Watanabe, S. 1983 New and interesting green algae from soils of some Asian and Oceanian regions. Arch. Protistenk., 127, 223-270. Strain(s): 153,  154,  155,  157,  158,  159,  160,  3572,  3573,  4107  DOI: 10.1016/S0003-9365(83)80021-9 Watanabe, S. 2020 Reclassification of Chlamydomonas monticola as Heterochlamydomonas (Volvocales, Chlorophyceae). Phycol. Res., 68, 332-335. Keywords: basal apparatus; 18S rDNA, naked swimming cells; parallel basa bodies; pyrenoid; soil alga; unequal flagella Strain(s): 157  DOI: 10.1111/pre.12431 Watanabe, S. & Lewis, L. A. 2017 Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy. Phycologia, 56, 329-353. Keywords: Alvikia; Ancestral state reconstruction; Chlamydomonas moewusii; Chlorococcum; Eubrownia; Moewusinia; Parachlorococcum; Spongiococcum; Tetracystis Strain(s): 155  DOI: 10.2216/16-64.1 Watanabe, S. & Nakada, T. 2018 Gymnomonas nepalensis gen. et sp. nov. for the naked flagellate strain ‘Nepal’, formerly identified as Dunaliella lateralis (Volvocales, Chlorophyceae). Phycol. Res., 66, 167-172. Strain(s): 3572,  4107  DOI: 10.1111/pre.12219 Watanabe, S., Fučíková, K., Lewis, L. A., Lewis P. O. 2016 Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza. Am. J. Bot., 103, 865-875. Keywords: biodiversity; chloroplast genome; epiphyte; gene loss; pyrenoid; transmission electron microscopy Strain(s): 3575  PubMed: 27208355 DOI: 10.3732/ajb.1500481 Watanabe, S., Matsunami, N., Okuma, I., Naythen, P. T., Fujibayashi, M., Iseri, Y., Hao, A., Kuba, T. 2022 Blue light irradiation increases the relative abundance of the diatom Nitzschia palea in co-culture with cyanobacterium Microcystis aeruginosa. Water Environ. Res., 94, e10707 (article ID). Keywords: algae; competition; light-emitting diode; water blooms Strain(s): 102  PubMed: 35403347 DOI: 10.1002/wer.10707 Watanabe, S., Mezaki, N., Nakada, T. 2023 Ultrastructure and phylogeny of Parietochloris toyamaensis sp. nov. and P. bilobata (Trebouxiophyceae). Eur. J. Phycol., 58, 35-44. Keywords: contractile vacuoles; dorsoventral zoospores; Ettlia; 18S rDNA; ITS2; Neochloris; soil algae; microtubular roots; Chlorophytes; SSU rDNA Strain(s): 3574  DOI: 10.1080/09670262.2022.2042603 Watanabe, S., Mitsui, K., Nakayama, T., Inouye, I. 2006 Phylogenetic relationships and taxonomy of sarcinoid green algae: Chlorosarcinopsis, Desmotetra, Sarcinochlamys gen. nov., Neochlorosarcina, and Chlorosphaeeopsis (Chlorophyceae, Chlorophyta). J. Phycol., 42, 679-695. Keywords: Chlorophyceae; Chlorophyta; Chlorosarcinopsis; Chlorosphaeropsis; Desmotetra; 18S rDNA; green algae; Neochlorosarcina; phylogeny; Sarcinochlamys Strain(s): 153  DOI: 10.1111/j.1529-8817.2006.00196.x Watanabe, S., Nozaki, H., Nakada, T., Lewis, L. A. 2016 Comparative ultrastructural analysis of Chloromonas and Gloeomonas (Chlorophyceae): tracing the origin of Gloeomonas-specific basal apparatus traits. Phycologia, 55, 585-601. Keywords: Chloromonadinia; Coarsely striated proximal fiber (CSPF); Distal connecting fiber-associated layered structure (DFLS); Gloeomonas rubrifilum comb. nov.; Ixipapillifera; Morphological novelty Strain(s): 447,  464  DOI: 10.2216/15-147.1 Watanabe, S., Tsujimura, S., Misono, T., Nakamura, S., Inoue, H. 2006 Hemiflagellochloris kazakhstanica gen. et sp. nov.: a new coccoid green alga with flagella of considerably unequal lengths from a saline irrigation land in Kazakhstan (Chlorophyceae, Chlorophyta). J. Phycol., 12, 696-706. Keywords: Chlorophyceae; flagella; green algae; Hemiflagellochloris; Kazakhstan; unequal lengths Strain(s): 1722  DOI: 10.1111/j.1529-8817.2006.00214.x Watanabe, Y., Ohmura, N., Saiki, H. 1992 Microbial CO2 fixation. 2. Isolation and determination of cultural characteristics of Chlorella strains which function under CO2 enriched atmosphere. CRIEPI Kenkyû-Hôkoku, U92014, 1-21 (in Japanese with English summary). Keywords: climate change; CO2; CO2 fixation; microalgae; Chlorella Strain(s): 27,  45,  92,  94,  122,  158,  204,  226,  227  Watanabe, Y., Tanaka, Y., Sakai, J. 2009 Bioluminescence imaging measurements of impact fluid pressure. J. JSCE [Doboku-kôgaku Ronbunshû], B2-65, 831-835 (in Japanese with English summary). Strain(s): 609  DOI: 10.2208/kaigan.65.831 Watanabe, Y., Watanabe, M. F., Watanabe, M. 1986 The distribution and relative abundance of bloom forming Microcystis species in several eutrophic water. Jap. J. Limnol., 47, 87-93. Strain(s): 3349  DOI: 10.3739/rikusui.47.87 Watanuki, T. 1979 Isolation and culture of Antarctic diatoms from the saline lakes in the Soya coast, east Antarctica. Memoirs of National Institute of Polar Research, Special issue 11, 35-41. Strain(s): 3744  Watanuki, T., Kaise, T., Mineo, H. 1990 Inhibition of Anabaena cylindrica (Cyanophyceae) growth by extracts of water weeds, using the paper disc-agar method. Jpn. J. Water Treat. Biol., 26, 1-5. Strain(s): 19  Watanuki, T., Ohno, M., Nakamura, S. 1987 Growth characteristics of Dunaliella sp., unicellular green alga isolated from a salt lake along the coastal region of Lüetzow-Holm bay, Antarctica. Rep. Usa mar. biol. Inst., Kouchi Univ., 9, 139-147. Keywords: Dunaliella sp.; Green algae; Saline lake; Antarctica Strain(s): 3744  Weber, A. P. M., Oesterhelt, C., Gross, W., Bräutigam, A., Imboden, L. A., Krassovskaya, I., Linka, N., Truchina, J., Schneidereit, J., Voll, H., Voll, L. M., Zimmermann, M., Jamai, A., Riekhof, W. R., Yu, B., Garavito, R. M., Benning, C. 2004 EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts. Plant Mol. Biol., 55, 17-32. Keywords: cyanidiales; EST-analysis; extremophile; genomics Strain(s): 3638  PubMed: 15604662 DOI: 10.1007/s11103-004-0376-y Wei, K., Amano, Y., Machida, M. 2020 Impacts of different extracellular polysaccharides on colony formation and buoyancy of Microcystis aeruginosa. Ann. Limnol.-Int. J. Limnol., 56, 28 (article ID). Keywords: Microcystis; buoyancy; colony formation; extracellular polysaccharides; tightly cell-bound extracellular polysaccharides Strain(s): 843  DOI: 10.1051/limn/2020026 Wei, K., Amano, Y., Machida, M., Asukabe, H., Harada, K. 2018 Effects of light and potassium ion on buoyancy regulation with gas vesicle in a cyanobacterium Microcystis aeruginosa NIES-843. Water Air Soil Pollut., 229, 352 (article ID). Keywords: Microcystis; Gas vesicle; Buoyancy; Sedimentation Strain(s): 843  DOI: 10.1007/s11270-018-4010-z Wei, K., Jung, S., Amano, Y., Machida, M. 2019 Control of the buoyancy of Microcystis aeruginosa via colony formation induced by regulating extracellular polysaccharides and cationic ions. SN Applied Sciences, 1, 1573 (article ID). Keywords: Buoyancy; Colony formation; Extracellular polysaccharides; Cationic ions; Microcystis Strain(s): 843  DOI: 10.1007/s42452-019-1637-3 Weiz, A. R., Ishida, K., Makower, K., Ziemert, N., Hertweck, C., Dittmann, E. 2011 Leader peptide and a membrane protein scaffold guide the biosynthesis of the tricyclic peptide microviridin. Chem. Biol., 18, 1413-1421. Strain(s): 298,  843  PubMed: 22118675 DOI: 10.1016/j.chembiol.2011.09.011 Wen, Z., Liu, Z., Hou, Y., Liu, C., Gao, F., Zheng, Y., Chen, F. 2015 Ethanol induced astaxanthin accumulation and transcriptional expression of carotenogenic genes in Haematococcus pluvialis. Enzyme Microb. Technol., 78, 10-17. Keywords: Haematococcus pluvialis; Astaxanthin; Ethanol; ipi; Fed-batch induction Strain(s): 144  PubMed: 26215339 DOI: 10.1016/j.enzmictec.2015.06.010 West, N. J., Schönhuber, W. A., Fuller, N. J., Amann, R. I., Rippka, R., Post, A. F., Scanlan, D. J. 2001 Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiol., 147, 1731-1744. Keywords: cyanobacteria; Red Sea; oligonucleotide probes; 16S rRNA; TSA Strain(s): 2885  Wetterwald, L., Leybros, A., Fleury, G., Delrue, F., Dimitriades-Lemaire, A., Chambonniere, P., Hertz, A. 2023 Supercritical CO2 extraction of neutral lipids from dry and wet Chlorella vulgaris NIES 227 microalgae for biodiesel production. J. Environ. Chem. Eng., 11, (article ID). Strain(s): 227  DOI: 10.1016/j.jece.2023.110628 Widyaningrum, D. & Ohama, T. 2020 Initial study of polymer-based nanoparticles effect on carotenogenesis of Haematococcus lacustris. In IOP Conference Series: Earth and Environmental Science, IOP Publishing Ltd, 457, 012035 (article ID). Keywords: Astaxanthin; carotenogenesis; Haematococcus lacustris; isobutyl-cyanoacrylate; nanoparticles Strain(s): 144  DOI: 10.1088/1755-1315/457/1/012035 Widyaningrum, D., Iida, D., Tanabe, Y., Hayashi, Y., Kurniasih, S. D., Ohama, T. 2019 Acutely induced cell mortality in the unicellular green alga Chlamydomonas reinhardtii (Chlorophyceae) following exposure to acrylic resin nanoparticles. J. Phycol., 55, 118-133. Keywords: abnormal swimming behavior; cell mortality; cell wall damage; Chlamydomonas rein-hardtii; poly(isobutyl-cyanoacrylate) nanoparticles; ROS Strain(s): 35,  144,  362,  418,  421,  432,  438,  456,  545,  571,  732,  737,  858,  1022,  1048,  1848,  2150,  2169,  2201,  2202,  2208,  2209,  2212,  2280,  2352,  2462,  2578  PubMed: 30304548 DOI: 10.1111/jpy.12798 Wiese, L., Wiese, W. 1977 On speciation by evolution of gametic incompatibility: a model case in Chlamydomonas. Am. Nat., 111, 733-742. Strain(s): 2223  DOI: 10.1086/283202 Witt, D. & Stackebrandt, E. 1988 Disproving the hypothesis of a common ancestry for the Ochromonas danica chrysoplast and Heliobacterium chlorum. Arch. Mikrobiol., 150, 244-248. Strain(s): 2142  DOI: 10.1007/BF00407787 Wittek, S. 2018 Acquisition of photoautotrophy in kleptoplastic dinoflagellates-Nusuttodinium aeruginosum/acidotum as a case study. PhD thesis, Universität zu Köln, Germany, 124 pp. Strain(s): 712,  713,  714  Wong, D. K., Grisdale, C. J., Slat, V. A., Rader, S. D., Fast, N. M. 2023 The evolution of pre-mRNA splicing and its machinery revealed by reduced extremophilic red algae. J. Eukaryot. Microbiol., 70, e12927 (article ID). Keywords: Cyanidiales; intron; spliceosome; transcriptome Strain(s): 1332  PubMed: 35662328 DOI: 10.1111/jeu.12927 Woo, S. P. S., Liu, W., Au, D. W. T., Anderson, D. M., Wu, R. S. S. 2006 Antioxidant responses and lipid peroxidation in gills and erythrocytes of fish (Rhabdosarga sarba) upon exposure to Chattonella marina and hydrogen peroxide: implications on the cause of fish kills. J. Exp. Mar. Biol. Ecol., 336, 230-241. Keywords: Antioxidant responses; Harmful algal blooms; Lipid peroxidation; Reactive oxygen species Strain(s): 3  DOI: 10.1016/j.jembe.2006.05.013 Worden, A. Z. et al. 2009 Green evolution and dynamic adaptations revealed by genomes of the Marine Picoeukaryotes Micromonas. Science, 324, 268-272. Strain(s): 2672  PubMed: 19359590 DOI: 10.1126/science.1167222 Worden, A. Z., Allen, A. E. 2010 The voyage of the microbial eukaryote. Curr. Opin. Microbiol., 13, 652-660. Strain(s): 2672  PubMed: 20832353 DOI: 10.1016/j.mib.2010.08.001 Wu, D., Yang, C., Zhang, X., Hou, X., Zhang, S., Dai, X., Zhang, X., Igarashi, Y., Luo, F. 2022 Algicidal effect of tryptoline against Microcystis aeruginosa: Excess reactive oxygen species production mediated by photosynthesis. Sci. Total Environ., 806, 150719 (article ID). Keywords: Cyanobacterial bloom; Algicidal activity; Photosystem; Electron transport; Water quality; Light conditions Strain(s): 843  PubMed: 34606873 DOI: 10.1016/j.scitotenv.2021.150719 Wu, Z. X., Gan, N. Q., Song, L. R. 2007 Genetic diversity: geographical distribution and toxin profiles of Microcystis strains (cyanobacteria) in China. J. Integr. Plant Biol., 49(3), 262-269. Keywords: diversity; geographical distribution; microcystin; Microcystis Strain(s): 98,  102  DOI: 10.1111/j.1672-9072.2006.00368.x Wu, Z.Y., Chen, G.Q., Chong, S.K., Mak, N.-K., Chen, F., Jiang, Y. 2010 Ultraviolet-B radiation improves astaxanthin accumulation in green microalga Haematococcus pluvialis. Biotechnol. Lett., 32, 1911-1914. Keywords: Antioxidant enzyme; Astaxanthin; Haematococcus pluvialis; Ultraviolet-B radiation Strain(s): 144  PubMed: 20697930 DOI: 10.1007/s10529-010-0371-0 Wullur, S., Sakakura, Y., Hagiwara, A. 2011 Application of the minute monogonont rotifer Proales similis de Beauchamp in larval rearing of seven-band grouper epinephelus septemfasciatus. Aquaculture, 315, 355-360. Keywords: Rotifer; Proales similis; Brachionus rotundiformis; Live food; Fatty acid; Epinephelus septemfasciatus Strain(s): 2146  DOI: 10.1016/j.aquaculture.2011.02.025 Xia, Y., Kishi, M., Sugai, Y., Toda, T. 2022 Microalgal flocculation and sedimentation: spatiotemporal evaluation of the effects of the pH and calcium concentration. Bioprocess. Biosyst. Eng., 45, 1489-1498. Keywords: Keywords; Harvesting; Sedimentation efficiency; Sedimentation rate; Calcium recovery Strain(s): 227  PubMed: 35918488 DOI: 10.1007/s00449-022-02758-0 Xiao, C. Guo, N., Liang, Z., Huang, Z., Li, W., Xie, M., Zhao, F. 2023 Ultrafast energy transfer dynamics in a cyanobacterial light-harvesting phycobilisome. Processes, 11, 1656 (article ID). Keywords: light-harvesting antenna; phycobilisomes; time-resolved spectroscopy; energy transfer Strain(s): 2134  DOI: 10.3390/pr11061656 Xing, H., Li, Q., Zhao, Y., Gao, H., Li, L., Zhang, Y., Yu, X. 2023 Exogenous proline boosts the co-accumulation of astaxanthin and biomass in stress-induced Haematococcus pluvialis. Bioresour. Technol., 369, 128488 (article ID). Keywords: Haematococcus pluvialis; Proline; Biomass; Astaxanthin productivity; Abiotic stresses Strain(s): 144,  712,  797  PubMed: 36528181 DOI: 10.1016/j.biortech.2022.128488 Xu, M., de Boer, H., Olafsdottir, E. S., Omarsdottir, S., Heidmarsson, S. 2020 Phylogenetic diversity of the lichenized algal genus Trebouxia (Trebouxiophyceae, Chlorophyta): a new lineage and novel insights from fungal-algal association patterns of Icelandic cetrarioid lichens (Parmeliaceae, Ascomycota). Bot. J. Linnean Soc., 194, 460–468. Keywords: Iceland; lichen; Parmeliaceae; phylogeny; symbiosis; Trebouxia Strain(s): 1271,  1278,  1289  DOI: 10.1093/botlinnean/boaa050 Xu, M., Harmon, J., Yuan, D., Yan, S., Lei, C., Hiramatsu, K., Zhou, Y., Loo, M. H., Hasunuma, T., Isozaki, A., Goda, K. 2021 Morphological indicator for directed evolution of Euglena gracilis with a high heavy metal removal efficiency. Environ. Sci. Technol., 55, 7880-7889. Keywords: microalgae; wastewater treatment; directed evolution; machine learning; single-cell analysis; imaging flow cytometry Strain(s): 48  PubMed: 33913704 DOI: 10.1021/acs.est.0c05278 Xu, S., Liu, Y., Zhang, J., Gao, B. 2021 Proteomic mechanisms for the combined stimulatory effects of glyphosate and antibiotic contaminants on Microcystis aeruginosa. Chemosphere, 267, 129244 (article ID). Keywords: Hormesis; Combined pollution; Synergistic stimulation; Cyanobacterial bloom; Protein-protein interaction network Strain(s): 843  PubMed: 33321278 DOI: 10.1016/j.chemosphere.2020.129244 Xuan, H., Dai, X., Li, J., Zhang, X., Yang, C., Luo, F. 2017 A Bacillus sp. strain with antagonistic activity against Fusarium graminearum kills Microcystis aeruginosa selectively. Sci. Total Environ., 583, 214-221. Keywords: Harmful algal blooms; Algicidal activity; Antagonism; Bifunctional biocontrol agent Strain(s): 44,  90,  843  PubMed: 28104332 DOI: 10.1016/j.scitotenv.2017.01.055 Yabuki, A., Ishida, K-I. 2011 Mataza hastifera n. g., n. sp.: a possible new lineage in the Thecofilosea (Cercozoa). J. Eucaryot. Microbiol., 58, 94-102. Keywords: Cryomonadida; Cryothecomonas; environmental sequence; extrusome; phylogeny; Protaspis; taxonomy; ultrastructure Strain(s): 2568  DOI: 10.1111/j.1550-7408.2010.00524.x Yabuki, A., Nakayama, T., Yubuki, N., Hashimoto, T., Ishida, K-I. Inagaki, Y. 2011 Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba". J. Eucaryot. Microbiol., 58, 319-331. Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure Strain(s): 1390  PubMed: 21569159 DOI: 10.1111/j.1550-7408.2011.00552.x Yabuki, A., Tame, A., Mizuno, K. 2023 Podomonas kaiyoae n. sp., a novel apusomonad growing axenically. J. Eukaryot. Microbiol., 70, e12946 (article ID). Strain(s): 4540  PubMed: 36047902 DOI: 10.1111/jeu.12946 Yabuki, A., Tanifuji, G., Kusaka, C., Takishia, K., Fujikura, K. 2016 Hyper-eccentric structural genes in the mitochondrial genome of the algal parasite Hemistasia phaeocysticola. Genome Biol. Evol., 8, 2870-2878. Keywords: gene fragmentation; RNA processing; mitochondrial genome; diplonemids; Euglenozoa Strain(s): 3356  PubMed: 27566761 DOI: 10.1093/gbe/evw207 Yagawa, Y., Aizawa, K., Yang, S.-Y., Miyachi, S. 1986 Release of carbonic anhydrase from the cell surface of Chlamydomonas reinhardtii by trypsin. Plant Cell Physiol., 27, 215-221. Keywords: carbonic anhydrase; cell surface; Chlamydomonas reinhardtii; trypsin treatment Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a077093 Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. I. Purification and properties of the enzyme. Plant Cell Physiol., 28, 1253-1262. Keywords: carbonic anhydrase; chloride ion-activation; Porphyridium cruentum Strain(s): 2138  DOI: 10.1093/oxfordjournals.pcp.a077413 Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. II. Distribution and role in photosynthesis. Plant Cell Physiol., 28, 1509-1516. Keywords: anti-Porphyridium carbonic anhydrase antibody; carbonic anhydrase; immunogold electron microscopy; intracellular distribution; Porphyridium cruentum Strain(s): 2138  DOI: 10.1093/oxfordjournals.pcp.a077445 Yagawa, Y., Muto, S., Miyachi, S. 1988 Carbonic anhydrase of Chlamydomonas reinhardtii. Cellular distribution and subunit constitution in two strains. Plant Cell Physiol., 29, 185-188. Keywords: carbonic anhydrase (cellular distribution); Chlamydomonas Strain(s): 2235  Yagawa, Y., Shiraiwa, Y., Miyachi, S. 1984 Carbonic anhydrase from the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 25, 775-783. Keywords: Anabaena variabilis; blue-green alga; carbonic anhydrase (EC4.2.1.1); cyanobacterium; enzyme purification Strain(s): 2093  DOI: 10.1093/oxfordjournals.pcp.a076772 Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1984 Growth characteristics of axenic and unialgal Microcystis isolated from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 496-503 (in Japanese with English summary). Keywords: Microcystis; bacteria; growth; axenic; algae Strain(s): 478,  604  Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1987 Limiting nutrients of algal growth in Lake Kasumigaura. Jpn. J. Water Poll. Res., 10, 115-122 (in Japanese with English summary). Keywords: Microcystis; blue-green algae; nutrients; algal growth potential Strain(s): 35,  478  Yagi, O., Ohkubo, N., Tomioka, N., Okada, M. 1989 Limiting nutrients of algal growth in Ushiku Marsh. Jpn. J. Limnol., 50, 139-148 (in Japanese with English summary). Keywords: algal growth potential; Microcystis; Selenastrum; nutrient Strain(s): 35,  478  Yagi, O., Sudo, R., Imaoka, T., Teranishi, S. 1984 Algal growth potential on munisipal wastewater using red tide organisms. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 231-242 (in Japanese with English summary). Strain(s): 35  Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T. 2009 Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae. Plant J., 60, 882-893. Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS) Strain(s): 3377  PubMed: 19709388 DOI: 10.1111/j.1365-313X.2009.04008.x Yalikun, Y., Ota, N., Guo, B., Tang, T., Zhou, Y., Lei, C., Kobayashi, H., Hosokawa, Y., Li, M., Enrique Muñoz, H., Di Carlo, D., Goda, K., Tanaka Y. 2020 Effects of flow-induced microfluidic chip wall deformation on imaging flow cytometry. Cytom. Part A, 97, 909-920. Keywords: glass microchannel; high-speed imaging flow cytometry; microchannel deformation effects; sample focusing Strain(s): 48  PubMed: 31856398 DOI: 10.1002/cyto.a.23944 Yamada, E., Hirota, T., Hatori, N., Kitao, Y., Fuse, Y., Aoki, S., Karatani, H., Matsunaga, T. 2012 Characterization of protein-like fluorophores released from lake phytoplankton on the basis of fractionation and electrophoresis. Anal. Sci., 28, 595-600. Strain(s): 109,  275,  665  PubMed: 22729046 DOI: 10.2116/analsci.28.595 Yamada, E., Ohara, S., Uehara, T., Hirota, T., Hatori, N., Fuse, Y., Aoki, S. 2012 Biodegradation of dissolved organic matter (DOM) released from phytoplankton in Lake Biwa. Anal. Sci., 28, 675-681. Strain(s): 109,  275,  665  PubMed: 22790369 DOI: 10.2116/analsci.28.675 Yamada, E., Sasai, K., Higa, R., Mizuguchi, H., Fuse Y. 2020 Characterization and dynamic analysis of dissolved proteins in Lake Biwa using two-dimensional electrophoresis. Anal. Sci., 36, 753-759. Strain(s): 109,  275,  391,  665  PubMed: 31956160 DOI: 10.2116/analsci.19P450 Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y. 2018 Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers. J. Environ. Safety, 9, 23-32. Keywords: photoirradiation; wavelength cut filter; photodegradation; dissolved organic matter; fulvic-like fluorophore; protein-like fluorophore; environmental waters Strain(s): 109,  275,  665  DOI: 10.11162/daikankyo.E17RP1101 Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S. 2019 Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). J. Phycol., 55, 196-203. Keywords: annulus; diatom; pattern center; scale; sternum Strain(s): 2565  PubMed: 30320892 DOI: 10.1111/jpy.12800 Yamada, K., Moriyama, R., Hatano, S. 1987 Production of osmotically labile cells in Chlorella ellipsoidea C-27 and C-102 by enzyme treatment. Agric. Biol. Chem., 51, 579-580. Strain(s): 2170  DOI: 10.1080/00021369.1987.10868044 Yamada, K., Nagasato, C., Motomura, T., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K., Yoshikawa, S. 2017 Mitotic spindle formation in Triparma laevis NIES-2565 (Parmales, Heterokontophyta). Protoplasma, 254, 461-471. Keywords: Central spindle; Centriole; Diatom; Extranuclear spindle; Mitosis; Nuclear envelope Strain(s): 2565  PubMed: 27048177 DOI: 10.1007/s00709-016-0967-x Yamada, K., Yoshikawa, S., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K. 2014 Effects of silicon-limitation on growth and morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta). PLoS One, 9, e103289 (article ID). Strain(s): 2565  PubMed: 25054645 DOI: 10.1371/journal.pone.0103289 Yamada, K., Yoshikawa, S., Ohki, K., Ichinomiya, M., Kuwata, K., Motomura, T., Nagasato, C. 2016 Ultrastructural analysis of siliceous cell wall regeneration in the stramenopile Triparma laevis (Parmales, Bolidophyceae). Phycologia, 55, 602-609. Keywords: Cell wall regeneration; Chloroplast endoplasmic reticulum; Exocytosis; Silica biomineralization; Silica deposition vesicle Strain(s): 2565  DOI: 10.2216/16-32.1 Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J. 2010 Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan. J. Oceanogr., 66, 755-771. Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM Strain(s): 2837,  2838,  2839,  2841,  2842,  2843,  2844  DOI: 10.1007/s10872-010-0062-4 Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M. 2017 Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema. Phycol. Res., 65, 217-225. Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA Strain(s): 16,  223,  2837,  2838,  2842  DOI: 10.1111/pre.12179 Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1985 Studies on earthy-musty odor in natural water (1). Growth characteristics and 2-methylisoborneol production of Phormidium tenue. Jpn. J. Water Poll. Res., 8, 515-521 (in Japanese with English summary). Keywords: blue-green algae; Phormidium tenue; growth characteristics; headspace-GC analysis; 2-methylisoborneol Strain(s): 512  Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1986 Studies on earthy-musty odor in natural water (3). Isolation of bacteria-free Phormidium tenue and the effect of associated bacteria on the growth of axenic P. tenue. Jpn. J. Water Poll. Res., 9, 379-385 (in Japanese with English summary). Keywords: Phormidium tenue; axenic; growth; 2-methylisoborneol; bacteria interaction Strain(s): 512  Yamada, T. & Sakaguchi, K. 1981 Protoplast induction in Chlorella species. Agric. Biol. Chem., 45, 1905-1909. Strain(s): 685,  2160,  2165,  2170,  2189  DOI: 10.1271/bbb1961.45.1905 Yamada, T. & Sakaguchi, K. 1982 Comparative studies on Chlorella cell walls: Induction of protoplast formation. Arch. Mikrobiol., 132, 10-13. Strain(s): 227,  686,  2159,  2163,  2166,  2168,  2171,  2189,  2352  DOI: 10.1007/BF00690809 Yamada, T. K., Miyaji, K., Nozaki, H. 2008 A taxonomic study of Eudorina unicocca (Volvocaceae, Chlorophyceae) and related species, based on morphology and molecular phylogeny. Eur. J. Phycol., 43, 317-326. Keywords: aplanosporic strain; Eudorina unicocca; Eudorina peripheralis stat. nov.; Chlorophyceae; molecular phylogeny; morphology; taxonomy; Volvocales; Yamagishiella Strain(s): 578,  666,  717,  722,  723,  724,  725,  726,  870,  872,  1855,  1856,  1857,  1858,  1859,  1860,  1861  DOI: 10.1080/09670260701763484 Yamada, T. K., Tsuchikane, Y., Wu, J.-T., Sekimoto, H., Miyaji, K., Nozaki, H. 2008 Morphology and molecular phylogeny of Eudorina sp. (Volvocaceae, Chlorophyceae) from Taiwan. Hikobia, 15, 135-143. Keywords: Eudorina elegans; Eudorina minodii; Eudorina unicocca; Eudorina peripheralis; Chlorophyceae; molecular phylogeny; morpholohy; taxsonomy; Volvocales Strain(s): 724,  725,  726,  1858,  2734,  2735  Yamada, T., Nakada, T., Miyaji, K., Nozaki, H. 2006 Morphology and molecular phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) newly found in Japan. J. Jpn. Bot., 81, 139-147. Keywords: Chlorophyceae; Gonium multicoccum; ITS2; rbcL; Volvocales Strain(s): 289,  569,  572,  653,  654,  851,  857,  1038,  1707,  1708,  1709,  1711,  1713  Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID). Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle Strain(s): 3715  DOI: 10.3389/fmars.2018.00167 Yamagishi, S., Yamamoto, K., Takahashi, K., Kawai-Toyooka, H., Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Evolutionary analysis of MID homologs during the transition from homothallic species to heterothallic species in Volvox sect. Volvox (Chlorophyceae). Phycol. Res., 72, 46-55. Keywords: male gamete; mating system; minus dominance gene (MID); molecular evolution; sex; sperm packet; volvocine green algae Strain(s): 289,  456,  460,  541,  544,  545,  569,  572,  574,  582,  652,  653,  654,  732,  851,  852,  857,  872,  891,  892,  1362,  1363,  1708,  1710,  1859,  2457,  2569,  2735,  2736,  2740,  3382,  3383,  3780,  3782,  3786,  3874,  3984,  3986,  3988,  4021,  4025,  4336,  4432,  4535,  4536,  4537  DOI: 10.1111/pre.12538 Yamagishi, T. & Kawai, H. 2012 Cytoskeleton organization during the cell cycle in two stramenopile microalgae, Ochromonas danica (Chrysophyceae) and Heterosigma akashiwo (Raphidophyceae), with special reference to F-actin organization and its role in cytokinesis. Protist, 163, 686-700. Keywords: Cytokinesis; F-actin; Heterosigma; microtubule; Ochromonas; phalloidin; stramenopiles Strain(s): 6  PubMed: 22104586 DOI: 10.1016/j.protis.2011.09.003 Yamagishi, T., Fuchida, S., Katsumata, M., Horie, Y., Mori, F., Kitayama, A., Kawachi, M., Koshikawa, H., Nozaki, T., Kumagai, H., Ishibashi, J-I., Tatarazako, N. 2018 Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981. Ecotoxicology, 27, 1303–1309. Keywords: Cyanobium sp.; Deep-sea mining; Delayed fluorescence; Ecotoxicological bioassay; Heavy metal Strain(s): 981  PubMed: 30311132 DOI: 10.1007/s10646-018-1989-2 Yamagishi, T., Horie, Y., Tatarazako, N. 2017 Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata. Chemosphere, 174, 1-7. Keywords: Azole fungicide; Clarithromycin; Erythromycin; Isobologram; Ketoconazole; Pseudokirchneriella subcapitata Strain(s): 35  PubMed: 28152378 DOI: 10.1016/j.chemosphere.2017.01.071 Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N. 2016 Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981). Ecotoxicology, 25, 1751-1758. Keywords: Algal growth inhibition test; Cyanobium sp.; Delayed fluorescence; Marine cyanobacteria Strain(s): 981  PubMed: 27633095 DOI: 10.1007/s10646-016-1718-7 Yamagishi, T., Kurihara, A., Kawai, H. 2015 A ribbon-like structure in the ejective organelle of the green microalga Pyramimonas parkeae (Prasinophyceae) consists of core histones and polymers containing N-acetyl-glucosamine. Protist, 166, 522-533. Keywords: Core histone; ejectisome; N-acetyl-glucosamine; Pyramimonas parkeae Strain(s): 251,  254  PubMed: 26398336 DOI: 10.1016/j.protis.2015.08.003 Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M. 2019 Ecotoxicological bioassay using marine algae for deep-sea mining. In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham, pp. 255-271. Strain(s): 323,  613,  969,  971,  981,  1000,  1001,  1310,  1411,  2304,  2587,  2590,  2670,  2672  DOI: 10.1007/978-3-030-12696-4_10 Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017 Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP. PLoS One, 12, e0171259 (article ID). Strain(s): 35  PubMed: 28152022 DOI: 10.1371/journal.pone.0171259 Yamagishi, T., Yamaguchi, H., Suzuki, S., Yoshikawa, M., Jameson, I., Lorenz, M., Nobles, D. R., Campbell, C., Seki, M., Kawachi, M., Yamamoto, H. 2020 Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide. PLoS One, 15, e0241889 (article ID). Strain(s): 35  PubMed: 33166324 DOI: 10.1371/journal.pone.0241889 Yamaguchi, H., Arisaka, H., Otsuka, N., Tomaru, Y. 2014 Utilization of phosphate diesters by phosphodiesterase-producing marine diatoms. J. Plankton Res., 36, 281-285. Keywords: marine diatoms; phosphate diester; phosphodiesterase; phosphorus Strain(s): 6  DOI: 10.1093/plankt/fbt091 Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138. Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure Strain(s): 716,  1870  DOI: 10.1111/j.1440-1835.2008.00493.x Yamaguchi, H., Nakayama, T., Hongoh, Y., Kawachi, M., Inouye, I. 2014 Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota). J. Plant Res., 127, 241-247. Keywords: 18S rRNA gene; 16S rRNA gene; Symbiosis; Hatena arenicola; Nephroselmiis; Phylogeny Strain(s): 935,  1414,  1417,  1418,  2864,  2865,  2866,  2867  PubMed: 23979010 DOI: 10.1007/s10265-013-0591-1 Yamaguchi, H., Nakayama, T., Murakami, A., Inouye, I. 2010 Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. J. Plant Res., 123, 333-342. Keywords: Chlorinimonas sublosa gen. et sp. nov.; Phylogeny; Raphidophyceae; Taxonomy; Ultrastructure Strain(s): 558,  1380,  1808,  1809  PubMed: 19946727 DOI: 10.1007/s10265-009-0281-1 Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID). Strain(s): 981  PubMed: 27469961 DOI: 10.1128/genomeA.00736-16 Yamaguchi, H., Suda, S., Nakayama, T., Pienaar, RN., Chihara, M., Inouye, I. 2011 Taxonomy of Nephroselmis viridis sp. nov. (Nephroselmidophyceae, Chlorophyta), a sister marine species to freshwater N. olivacea. J. Plant Res., 124, 49-62. Keywords: 18S rDNA; Intron; Nephroselmis viridis; Phylogeny; Prasinophyceae; Ultrastructure Strain(s): 486  PubMed: 20499263 DOI: 10.1007/s10265-010-0349-y Yamaguchi, H., Sumida, N., Matsukawa, K., Adachi, M., Tomaru, Y., Ishikawa, K., Hotta, J. 2023 Establishment of a simple method for cryopreservation of the marine diatoms, Chaetoceros and Phaeodactylum. J. Appl. Phycol., 33, 2285–2293. Keywords: CELLBANKER; Cryopreservation; Marine diatoms; Chaetoceros tenuissimus; Phaeodactylum tricornutum; Transgenic diatom Strain(s): 324,  3714,  3715  DOI: 10.1007/s10811-023-03040-w Yamaguchi, H., Suzuki, S., Kawachi, M. 2018 Draft genome sequence of Microcystis aeruginosa NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 6, e01596-17 (article ID). Strain(s): 87  PubMed: 29472345 DOI: 10.1128/genomeA.01596-17 Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol. Resour. Ann.., 9, e00052-20 (article ID). Strain(s): 3787,  3804,  3806,  3807  PubMed: 32241856 DOI: 10.1128/MRA.00052-20 Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2018 Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. J. Genomics, 6, 30-33. Keywords: algal bloom; cyanobacteria; genome; Microcystis Strain(s): 2481  PubMed: 29576807 DOI: 10.7150/jgen.24935 Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2020 Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102. J. Genomics, 8, 1-6. Keywords: algal bloom; cyanobacteria; genome; microcystin; Microcystis aeruginosa; Lake Kasumigaura Strain(s): 102  PubMed: 31892993 DOI: 10.7150/jgen.40978 Yamaguchi, H., Suzuki, S., Sano, T., Tanabe, Y., Nakajima, N., Kawachi, M. 2016 Draft genome sequence of Microcystis aeruginosa NIES-98, a non-microcystin-producing cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 4, e01187-16 (article ID). Strain(s): 98  PubMed: 27834696 DOI: 10.1128/genomeA.01187-16 Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID). Strain(s): 2549  PubMed: 26021928 DOI: 10.1128/genomeA.00551-15 Yamaguchi, H., Zaima, M., Adachi, M., Tomaru, Y., Asahara, H., Nishiwaki, N. 2022 Selective utilization of phosphorus compounds by Chaetoceros tenuissimus (Bacillariophyceae): Approach using 31P nuclear magnetic resonance analysis. Phycol. Res., 70, 151-159. Strain(s): 3715  DOI: 10.1111/pre.12485 Yamaguchi, K., Murakami, M., Okino, T. 1989 Screening of angiotensin-converting enzyme inhibitory activities in microalgae. J. Appl. Phycol., 1, 271-275. Keywords: angiotensin converting enzyme; inhibitor; microalgae; peptide; screening Strain(s): 14,  100,  102,  104,  114  Yamaguchi, M., Ogawa, T., Muramoto, K., Kamio, Y., Jimbo, M., Kamiya, H. 1999 Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis. Biochem. Biophys. Res. Commun., 265, 703-708. Keywords: Microcystis viridis; lectin; cyanobacterium; mannan-binding lectin; blue-green algae; hemaggulutinin Strain(s): 102  DOI: 10.1006/bbrc.1999.1749 Yamaguchi, T., Kobayashi, Y., Adachi, K., Imamura, N. 2003 Argimicins B and C, new anti-cyanobacterial compounds produced by Sphingomonas sp. M-17. J. Antibiot., 56, 655-657. Strain(s): 45,  81,  102,  230,  298,  592  PubMed: 14513910 DOI: 10.7164/antibiotics.56.655 Yamaki, H., Sitachitta, N., Sano, T., Kaya, K. 2005 Two new chymotrypsin inhibitors isolated from the cyanobacterium Microcystis aeruginosa NIES-88. J. Nat. Prod., 68, 14-18. Strain(s): 88  PubMed: 15679310 DOI: 10.1021/np0401361 Yamamoto, H., Fukasawa, Y., Shoji, Y., Hisamoto, S., Kikuchi, T., Takamatsu, A., Iwasaki, H. 2021 Scattered migrating colony formation in the filamentous cyanobacterium, Pseudanabaena sp. NIES-4403. BMC Microbiol., 21, 227 (article ID). Keywords: Cyanobacteria; Colony pattern formation; Collective behavior; Cell motility Strain(s): 4403  PubMed: 34399691 DOI: 10.1186/s12866-021-02183-5 Yamamoto, H., Hada, K., Yamaji, H., Katsuda, T., Ohno, H., Fukuda, H. 2006 Application of regularized alternating least squares and independent component analysis to HPLC-DAD data of Haematococcus pluvialis metabolites. Biochem. Eng. J., 32, 149-156. Keywords: metabolomics; chemometrics; HPLC-DAD; alternating least squares; regularized term; independent component analysis Strain(s): 144  DOI: 10.1016/j.bej.2006.09.014 Yamamoto, H., Nakamura, Y., Nakamura, Y., Kitani, C., Imari, T., Sekizawa, J., Takao, Y., Yamashita, N., Hirai, N., Oda, S., Takarazako, N. 2007 Initial ecological risk assessment of eight selected human pharmaceuticals in Japan. Environ. Sci., 14, 177-193. Keywords: pharmaceuticals; initial risk assessment; aquatic organisms; predicted no effect concentration Strain(s): 35  PubMed: 17762841 Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Matsuzaki, R., Takahashi, F., Nishimura, Y., Kawachi, M., Noguchi, H., Minakuchi, YY., Umen, J. G., Toyoda, A., Nozaki, H. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID). Keywords: Volvox; evolution; heterothallism; homothallism; sex Strain(s): 3780,  3781,  3782,  3783,  3784,  3785,  3786  PubMed: 34011609 DOI: 10.1073/pnas.2100712118 Yamamoto, K., Kawai-Toyooka, H., Hamaji, T., Tsuchikane, Y., Mori, T., Takahashi, F., Sekimoto, H., Ferris, P. J., Nozaki, H. 2017 Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids. PLoS One, 12, e0180313 (article ID). Strain(s): 3780,  3782,  3783,  3785,  3786,  3986,  4110,  4111  PubMed: 28665990 DOI: 10.1371/journal.pone.0180313 Yamamoto, K., Matsuzaki, R., Mahakham, W., Heman, W., Sekimoto, H., Kawachi, M., Minakuchi, Y., Toyoda, A., Nozaki, H. 2023 Expanded male sex-determining region conserved during the evolution of homothallism in the green alga Volvox. iScience, 26, 106893 (article ID). Strain(s): 3780,  3785,  3786,  4468  PubMed: 37378338 DOI: 10.1016/j.isci.2023.106893 Yamamoto, M., Handa, S., Kawachi, M., Miyamura, S., Nagumo, T., Hirata, A., Kawano, S. 2016 Mother cell wall cleavage during filament formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 35-39. Keywords: Binary fission; Filament formation; Mother cell wall; Stichococcus; Trebouxiophyceae Strain(s): 3639  DOI: 10.1508/cytologia.81.35 Yamamoto, M., Nozaki, H., Kawano, S. 2001 Evolutionary relationships among multiple modes of cell division in the genus Nannochloris (Chlorophyta) revealed by genome size, actin gene multiplicity, and phylogeny. J. Phycol., 37, 106-120. Keywords: actin gene; autosporulation; binary fission; budding; cell division; Chlorophyta; DNA content; genome size; phylogeny; Nannochloris Strain(s): 2160,  4016  DOI: 10.1046/j.1529-8817.2001.037001106.x Yamamoto, M., Nozaki, H., Miyazawa, Y., Koide, T., Kawano, S. 2003 Relationship between presence of a mother cell wall and speciation in the unicellular microalga Nannochloris (Chlorophyta). J. Phycol., 39, 172-184. Keywords: 18S rRNA; actin gene; autosporulation; binary fission; budding; Chlorella; Chlorophyta; molecular phylogeny; TBR, tree bisection reconnection Strain(s): 2160,  2169,  2173,  2186,  4016  DOI: 10.1046/j.1529-8817.2003.02052. Yamamoto, Y. 1972 The fatty acid composition of akinetes, heterocysts and vegetative cells in Anabaena cylindrica. Plant Cell Physiol., 13, 913-915. Strain(s): 19  Yamamoto, Y. 1975 Effect of desiccation on the germination of akinetes of Anabaena cylindrica. Plant Cell Physiol., 16, 749-752. Strain(s): 19  Yamamoto, Y. 1976 Effect of some physical and chemical factors on the germination of akinates of Anabaena cylindrica. J. Gen. Appl. Microbiol., 22, 311-323. Strain(s): 19  DOI: 10.2323/jgam.22.311 Yamamoto, Y. 1978 Detection of algal lysing biological agents in lakes by the soft-agar overlayer technique. Jpn. J. Limnol, 39, 9-14 (in Japanese with English summary). Strain(s): 19  Yamamoto, Y. 1981 Observation on the occurrence of microbial agents which cause lysis of blue-green algae in Lake Kasumigaura. Jpn. J. Limnol., 42, 20-27. Strain(s): 19  Yamamoto, Y. & Shiah, F.-K. 2010 Relationship between cell growth and frequency of dividing cells of Microcystis aeruginosa. Plankton Benthos Res., 5, 131-135. Keywords: frequency of dividing cells; incubation experiment; Microcystis aeruginosa; specific growth rate Strain(s): 1355  DOI: 10.3800/pbr.5.131 Yamamoto, Y. & Suzuki, K. 1990 Distribution and algal-lysing activity of fruiting myxobacteria in Lake Suwa. J. Phycol., 26, 457-462. Keywords: algal-lysing activity; cyanobacteria; fruiting myxobacteria Strain(s): 19,  40,  44,  99,  102,  112  DOI: 10.1111/j.0022-3646.1990.00457.x Yamamoto, Y., Kawashima, D., Hashizume, A., Hisamotsu, M., Isono, N. 2013 Purification and characterization of 1,3-β-D-glucan phosphorylase from Ochromonas danica. Biosci. Biotechnol. Biochem., 77, 130411-130416. Keywords: 1,3-β-D-glucan phosphorylase; Ochromonas danica; laminarin; laminarioligosaccharides; 1,3-β-D-glucan Strain(s): 2142  PubMed: 24018693 DOI: 10.1271/bbb.130411 Yamamoto, Y., Shiah, FK. 2015 Effect of sonication on live and fixed cells of Microcystis aeruginosa. Plankton Benthos Res., 10, 163-166. Keywords: cell destruction; fixation; Lugol's iodine solution; Microcystis aeruginosa; sonication Strain(s): 1090,  1157  DOI: 10.3800/pbr.10.163 Yamane, K., Matsuyama, S., Igarashi, K., Kuwabara, T. 2013 Pyrolytic Generation of Petroleum Crude Oils from the Marine Phytomicroalgal Coccolithophore Emiliania huxleyi (Haptophyta) and Preparation of n-Alkane-Rich Biofuel. Energy Fuels, 27, 7470–7479. Strain(s): 837  DOI: 10.1021/ef401618t Yamane, K., Matsuyama, S., Igarashi, K., Utsumi, M., Shiraiwa, Y., Kuwabara, T. 2013 Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68 ºC enhances generarion of n-alkane-rich biofules after pyrolysis. Appl. Environ. Microbiol., 79, 924-930. Strain(s): 837,  2258  PubMed: 23183975 DOI: 10.1128/AEM.01685-12 Yamano, T. & Fukuzawa, H. 2020 Transformation of the model microalga Chlamydomonas reinhardtii without cell-wall removal. In Electroporation Protocols. Methods in Molecular Biology, Eds. by Li, S., Chang, L., Teissie, J., Humana, New York, NY, 2050, pp. 155-161. Keywords: Chlamydomonas reinhardtii; Electroporation; Photosynthesis; Protist; Square electric pulse Strain(s): 2235  PubMed: 31468489 DOI: 10.1007/978-1-4939-9740-4_16 Yamano, T., Iguchi, H. Fukuzawa, H. 2013 Rapid transformation of Chlamydomonas reinhardtii without cell-wall removal. J. Biosci. Bioeng., 115, 691-694. Keywords: Chlamydomonas reinhardtii; Electroporation; Square electric pulse; Transformation Strain(s): 2235  PubMed: 23333644 DOI: 10.1016/j.jbiosc.2012.12.020 Yamano, T., Miura, K., Fukuzawa, H. 2008 Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 147, 340-354. Strain(s): 2235  PubMed: 18322145 DOI: 10.1104/pp.107.114652 Yamano, T., Toyokawa, C., Shimamura, D., Matsuoka, T., Fukuzawa, H. 2021 CO2-dependent migration and relocation of LCIB, a pyrenoid-peripheral protein in Chlamydomonas reinhardtii. Plant Physiol., 188, 1081–1094. Strain(s): 2235  PubMed: 34791500 DOI: 10.1093/plphys/kiab528 Yamasaki, Y., Fujita, M., Kawano, S., Baba, T. 2018 Effect of salinity on interspecific competition between the dinoflagellate Alexandrium catenella and the raphidophyte Heterosigma akashiwo. Aquat. Microb. Ecol., 81, 73-82. Keywords: Allelopathy; Cell contact; Hemolytic activity; Growth inhibition; Heterosigma akashiwo; Alexandrium catenella; Bi-algal culture Strain(s): 10  DOI: 10.3354/ame01860 Yamasaki, Y., Hirayama, R., Yamamoto, A., Yuasa, K., Shikata, T. 2022 Effects of micronutrients on the detection of extracellular superoxide produced by the harmful raphidophyte Chattonella antiqua in culture. J. Plankton Res., 44, 36–47. Keywords: Chattonella; fish mortality; harmful algal bloom; manganese; reactive oxygen species; superoxide Strain(s): 1  DOI: 10.1093/plankt/fbab087 Yamasaki, Y., Nagasoe, S., Matsubara, T., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2007 Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo. Mar. Ecol. Prog. Ser., 339, 83-92. Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition Strain(s): 10,  324  DOI: 10.3354/meps339083 Yamasaki, Y., Nagasoe, S., Tameishi, M., Shikata, T., Zou, Y., Jiang, Z., Matsubara, T., Shimasaki, Y., Yamaguchi, K., Oshima, Y., Honjo, T. 2010 The role of interactions between Prorocentrum minimum and Heterosigma akashiwo in bloom formation. Hydrobiologia, 641, 33-44. Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum Strain(s): 1,  10,  324  DOI: 10.1007/s10750-009-0052-y Yamasaki, Y., Ohmichi, Y., Hirose, M., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2012 Low molecular weight allelochemicals produced by the diatom, Skeletonema costatum. Thalassas, 28, 9-17. Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum Strain(s): 10,  324  Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T. 2010 Species-specific allelopathic effects of the diatom Skeletonema costatum. Thalassas, 27, 21-32. Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect Strain(s): 10,  324  Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T. 2009 Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community. ISME J., 3, 808-817. Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum Strain(s): 10,  324  PubMed: 19322242 DOI: 10.1038/ismej.2009.24 Yamashita, K., Tokunaga, E. 2020 Noninvasive and safe cell viability assay for Paramecium using natural pigment extracted from food. Sci Rep, 10, 10996 (article ID). Strain(s): 2238  PubMed: 32620770 DOI: 10.1038/s41598-020-67712-0 Yamashita, N., Yasojima, M., Nakada, N., Miyajima, K., Komori, K., Suzuki, Y., Tanaka, H. 2006 Effects of antibacterial agents, levofloxacin and clarithromycin, on aquatic organisms. Water Sci. Technol., 53, 65-72. Keywords: antibacterial agent; clarithromycin; ecotoxicity; levofloxacin; risk Strain(s): 35  PubMed: 16862775 DOI: 10.2166/wst.2006.338 Yamashita, S. & Nozaki, H. 2019 Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae. BMC Evol. Biol., 19, 120 (article ID). Keywords: Multicellularity; Body plan; Embryogenesis; Volvocine green algae; Gonium; Tetrabaena Strain(s): 571,  4327  PubMed: 31185890 DOI: 10.1186/s12862-019-1452-x Yamashita, S., Arakaki, Y., Kawai-Toyooka, H., Noga, A., Hirono, M., Nozaki, H. 2016 Alternative evolution of a spheroidal colony in volvocine algae: developmental analysis of embryogenesis in Astrephomene (Volvocales, Chlorophyta). BMC Evol. Biol., 16, 243 (article ID). Strain(s): 4017,  4018  PubMed: 27829356 DOI: 10.1186/s12862-016-0794-x Yamashita, S., Yamamoto, K., Matsuzaki, R., Shigekatsu, S., Yamaguchi, H., Hirooka, S., Minakuchi, Y., Miyagishima, S., Masanobu, M., Atsushi, T., Hisayoshi, N. 2021 Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation. Sci Rep, 11, 22231 (article ID). Strain(s): 4017  PubMed: 34811380 DOI: 10.1038/s41598-021-01521-x Yamatogi, T., Miyahara, J., Tanaka, J. 1996 Preculture of noxious red tide flagellate Chattonella antiqua (Raphidophyceae) for AGP assay. Bull. Nagasaki Pref. Inst. Fish., 22, 7-13 (in Japanese with English summary). Strain(s): 1  Yamazaki, T ., Owari, S., Ota, S., Sumiya, N., Yamamoto, M., Watanabe, K., Nagumo, T. , Miyamura, S., Kawano, S. 2013 Localization and evolution of septins in algae. Plant J., 74, 605-614. Keywords: green algae; Marvania geminata; Nannochloris bacillaris; algal septins; septin phylogeny Strain(s): 4016  PubMed: 23398289 DOI: 10.1111/tpj.1214 Yamazaki, T., Konosu, E., Takeshita, T., Hireta, A., Ota, S., Kazama, Y., Abe, T., Kawano, S. 2018 Independent regulation of the lipid and starch synthesis pathways by sulfate metabolites in the green microalga Parachlorella kessleri under sulfur starvation conditions. Algal Res., 36, 37-47. 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J. 2023 Enhanced astaxanthin production of Haematococcus pluvialis strains induced salt and high light resistance with gamma irradiation. Bioresour. Technol., 372, 128651 (article ID). Keywords: Haematococcus pluvialisStrain(s): 144  PubMed: 36682476 DOI: 10.1016/j.biortech.2023.128651 Yang, S.-Y., Tsuzuki, M., Miyachi, S. 1985 Carbonic anhydrase of Chlamydomonas: Pulification and studies on its induction using antiserum against Chlamydomonas carbonic anhydrase. Plant Cell Physiol., 26, 25-34. Keywords: affinity chromatography; carbon dioxide concentration; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction Strain(s): 2235  DOI: 10.1093/oxfordjournals.pcp.a076892 Yang, Y., Maruyama S., Sekimoto, H., Sakayama, H., Nozaki, H. 2011 An extended phylogenetic analysis reveals ancient origin of “non-green" phosphoribulokinase genes from two lineages of "green” secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta. BMC Research Notes, 4, 330 (article ID). 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Keywords: astaxanthin; Haematococcus pluvialis; transmitted light; physiological response Strain(s): 144  PubMed: 17027870 DOI: 10.1263/jbb.102.97 Yoshino, T., Mao, Y., Maeda, Y., Negishi, R., Murata, S., Moriya, S., Shimada, H., Arakaki, A., Kobayashi, K., Hagiwara, Y., Okamoto, K., Tanaka, T. 2022 Single-cell genotyping of phytoplankton from oceanwater by gel-based cellmanipulation. Biotechnol. J., 17, 2100633 (article ID). Keywords: gel-based cell manipulation; microcavity array; phytoplankton; single-cell; whole genome amplificatio Strain(s): 144,  385,  2145  PubMed: 35195355 DOI: 10.1002/biot.202100633 Yoshioka, S., Taniguchi, F., Miura, K., Inoue, T., Yamano, T., Fukuzawa, H. 2004 The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell, 16, 1466-1477. Strain(s): 2235  PubMed: 15155888 DOI: 10.1105/tpc.021162 Yoshitomi, T., Kaminaga, S., Sato, N., Toyoshima, M., Moriyama, T., Yoshimoto, K. 2020 Formation of spherical palmelloid colony with enhanced lipid accumulation by gel encapsulation of Chlamydomonas debaryana NIES-2212. Plant Cell Physiol., 61, 158–168. Keywords: Chlamydomonas; Acyltransferase; Alginate gel; Gel encapsulation; Palmelloid colony; Triacylglycerol Strain(s): 2212  PubMed: 31589321 DOI: 10.1093/pcp/pcz188 Yoshitomi, T., Shimada, N., Iijima, K., Hashizume, M., Yoshimoto, K. 2019 Polyethyleneimine-induced astaxanthin accumulation in the green alga Haematococcus pluvialis by increased oxidative stress. J. Biosci. Bioeng., 128, 751-754. Keywords: Polyethyleneimine; Haematococcus pluvialis; Astaxanthin; Cellular uptake; Reactive oxygen species; Flocculant; Oxidative stress; Microalgae Strain(s): 144  PubMed: 31253510 DOI: 10.1016/j.jbiosc.2019.06.002 Yoshizako, F., Nishimura, A., Chubachi, M. 1992 Microbial reduction of cyclohexanone by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 74, 395-397. Strain(s): 226  DOI: 10.1016/0922-338X(92)90039-W Yoshizako, F., Nishimura, A., Chubachi, M. 1994 Identification of algal transformation products from alicyclic ketones. J. Ferment. Bioeng., 77, 144-147. Strain(s): 226  DOI: 10.1016/0922-338X(94)90313-1 Yoshizako, F., Nishimura, A., Chubachi, M., Horii, T., Ueno, T. 1991 Bioconversion of cyclohexaneacetic acid to monohydroxycyclo-hexaneacetic acids by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 72, 343-346. Strain(s): 226,  227  Yoshizako, F., Ogino, M., Nishimura, A., Chubachi, M., Horii, T. 1995 Biotransformation of cyclic β-keto esters by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 79, 141-145. Keywords: Chlorella pyrenoidosa Chick; cyclic β-keto esters; biotransformation; alkoxycarbolyl group elimination; carbonyl group reduction Strain(s): 226  DOI: 10.1016/0922-338X(95)94081-2 Yruela, I., Moreno-Yruela, C., Olsen, C. A. 2021 Zn2+-dependent histone deacetylases in plants: Structure and evolution. Trends Plant Sci., 26, 741-757. Keywords: histone deacetylase; epigenetics; plant evolution; ductility; intrinsic disorder; zinc-binding Strain(s): 843,  4106  PubMed: 33461867 DOI: 10.1016/j.tplants.2020.12.011 Yu, B. S., Sung, Y. J., Choi, H. I., Sirohi, R., Sim, S. J. 2021 Concurrent enhancement of CO2 fixation and productivities of omega-3 fatty acids and astaxanthin in Haematococcus pluvialis culture via calcium-mediated homeoviscous adaptation and biomineralization. Bioresour. Technol., 340, 125720 (article ID). Keywords: Haematococcus pluvialis; Biomineralization; Omega-3 fatty acids; Astaxanthin Strain(s): 144  PubMed: 34365300 DOI: 10.1016/j.biortech.2021.125720 Yu, Y., Zeng, Y., Li, J., Yang, C., Zhang, X., Luo, F., Dai, X. 2019 An algicidal Streptomyces amritsarensis strain against Microcystis aeruginosa strongly inhibits microcystin synthesis simultaneously. Sci. Total Environ., 650, 34-43. Keywords: Harmful algal blooms; Microcystins; Algicidal activity; Streptomyces amritsarensis Strain(s): 44,  90,  843  PubMed: 30195130 DOI: 10.1016/j.scitotenv.2018.08.433 Yu, Z., Xu, Q., Xiao, C., Li, H., Wu, W., Du, W., Zhao, J., Liu, H., Wang, H., Liu, C. 2021 SYBR Green real-time qPCR method: Diagnose drowning more rapidly and accurately. Forensic Sci.Int., 321, 110720 (article ID). 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Protist, 167, 584-596. Keywords: Culturing; cytoskel; etonevolution; flagellar apparatus; morphology; ultrastructure Strain(s): 4563  PubMed: 27816016 DOI: 10.1016/j.protis.2016.10.001 Yubuki, N., Inagaki, Y., Nakayama, T., Inouye, I. 2007 Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n.gen., n.sp., a new member of the Fornicata. J. Eucaryot. Microbiol., 54, 191-200. Keywords: amitochondriate; Carpediemonas membranifera; diplomonads; Excavata; microaerophilic; retortamonads; typical excavates Strain(s): 1843  DOI: 10.1111/j.1550-7408.2007.00252.x Yubuki, N., Nakayama, T., Inouye, I. 2008 A unique life cycle and perennation in a colorless chrysophyte Spumella sp. J. Phycol., 44, 164-172. Keywords: cannibalism; Chrysophyceae; colorless chrysophyte; doubling time; growth rate; heterotrophic flagellate Strain(s): 1846  PubMed: 27041053 DOI: 10.1111/j.1529-8817.2007.00441.x Yubuki, N., Simpson, A. G. 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Strain(s): 73,  81,  87,  88,  89,  90,  91,  98,  99,  100,  101,  102,  104,  105,  106,  108,  109,  110,  111,  112,  204,  230,  298,  299,  604  Yuki-jirushi [Snow Brand] Milk Products Co.Ltd., Showa Denko K.K. 1992 Separation and purification of useful substances from Euglena [Euglena kara no yûyô-busshitsu no Bunri Seisei]. In The Advanced Technology of the Separation and Purification of the Materials for Physiologically Functional Foods and Their Development [Kinôsei Shokuhin Sozai no Kôdo Bunri Seisei to Kaihatsu], Ed. and published by The Japanese Research and Development Association for the High Separation System in Food Industry [Shokuhin Sangyô Hai-separêshon Sisutemu Gijutu Kenkyû Kumiai], Tokyo, pp. 363-382 (in Japanese). Strain(s): 48  Yumoto, K., Kasai, F., Kawachi, M. 2013 Taxonomic re-examination of Chlamydomonas strains maintained in the NIES-Collection. Microbiol. Cult. Coll., 29, 1-12. 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Keywords: cyanobacteria; Cylindrospermopsis raciborskii; deoxy-cylindrospermopsin; distribution Strain(s): 992,  3583  DOI: 10.1111/j.1440-1835.2012.00639.x Zehr, J. P., Ohki, K., Fujita, Y. 1991 Arrangement of nitrogenase structural genes in an aerobic filamentous nonheterocystous cyanobacterium. J. Bacteriol., 173, 7055-7058. Strain(s): 3600  PubMed: 1938909 DOI: 10.1128/jb.173.21.7055-7058.1991 Zehr, J. P., Ohki, K., Fujita, Y., Landry, D. 1991 Unique modification of adenine in genomic DNA of the marine cyanobacterium Trichodesmium sp. strain NIBB 1067. J. Bacteriol., 173, 7059-7062. Strain(s): 3600  PubMed: 1657876 DOI: 10.1128/jb.173.21.7059-7062.1991 Zeng, Y., Wang, J., Yang, C., Ding, M., Hamilton, P. B., Zhang, X., Yang, C., Zhnang, L., Dai, X. 2021 A Streptomyces globisporus strain kills Microcystis aeruginosa via cell-to-cell contact. Sci. Total Environ., 769, 144489 (article ID). 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N. 2019 Use of an integrated metabolomics platform for mechanistic investigations of three commonly used algaecides on cyanobacterium, Microcystis aeruginosa. J. Hazard. Mater., 367, 120-127. Keywords: Metabolomics; Mass spectrometry; Algaecides; Mechanisms; Untargeted analysis Strain(s): 843  PubMed: 30594710 DOI: 10.1016/j.jhazmat.2018.12.069 Zhang, L., Fan, Y., Shi, F., Qin, S., Liu, B. 2012 Molecular cloning, characterization, and expression analysis of a cytosolic HSP90 gene from Haematococcus pluvialis. J. Appl. Phycol., 24, 1601-1612. Keywords: Haematococcus pluvialis; Heat shock protein 90; cDNA cloning; qRT-PCR; mRNA expression Strain(s): 144  DOI: 10.1007/s10811-012-9821-5 Zhang, P., MacTavish, B. S., Yang, G., Chen, M., Roh, J., Newsome, K. R., Bruner, S. D., Ding, Y. 2020 Cyanobacterial dihydroxyacid dehydratases are a promising growth inhibition target. ACS Chem. Biol., 15, 2281–2288. 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E., Volkman, J. K., Lu, Y. 2022 Widespread sterol methyltransferase participates in the biosynthesis of both C4α- and C4β-methyl sterols. J. Am. Chem. Soc., 144, 9023-9032. Strain(s): 3808  PubMed: 35561259 DOI: 10.1021/jacs.2c01401 Zhu, F., Massana, R., Not, F., Marie, D., Vaulot, D. 2005 Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol. Ecol., 52, 79-92. Keywords: Coastal ecosystems; Ecology; Fluorescent in situ hybridization; Picoplankton; Prasinophytes; Quantitative PCR Strain(s): 2673,  2687  PubMed: 16329895 DOI: 10.1016/j.femsec.2004.10.006 Zhu, J. & Wakisaka, M. 2018 Growth promotion of Euglena gracilis by ferulic acid from rice bran. AMB Express, 8, 16 (article ID). 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R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID). Strain(s): 30,  208,  592,  593,  1031,  2101,  2119,  2130  PubMed: 28254973 DOI: 10.1128/genomeA.01676-16 Ziemert, N., Ishida, K., Quillardet, P., Bouchier, C., Hertweck, C., de Marsac, N. T., Dittmann, E. 2008 Microcyclamide biosynthesis in two strains of Microcystis aeruginosa: from structure to genes and vice versa. Appl. Environ. Microbiol., 74, 1791-1797. Strain(s): 298  PubMed: 18245249 DOI: 10.1128/AEM.02392-07 Ziemert, N., Ishida, K., Weiz, A., Hertweck, C., Dittmann, E. 2010 Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides. Appl. Environ. Microbiol., 76, 3568-3574. Strain(s): 100,  101,  102,  843  PubMed: 20363789 DOI: 10.1128/AEM.02858-09 Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Chloramphenicol acetyltransferase a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae. Protoplasma, 254, 587-596. Keywords: Cyanidioschyzon merolae; Chloramphenicol acetyltransferase (CAT) stable genome transformation Strain(s): 3377  PubMed: 26715590 DOI: 10.1007/s00709-015-0936-9 Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments. Plant Mol. Biol., 93, 171-183. Keywords: Stable chloroplast transformation; Cyanidioschyzon merolae; Chloramphenicol acetyltransferase; PEG; Biolistic bombardment Strain(s): 1332  PubMed: 27796719 DOI: 10.1007/s11103-016-0554-8 Zienkiewicz, M., Krupnik, T., Drożak, A., Kania, K. 2019 PEG-mediated, stable, nuclear and chloroplast transformation of Cyanidioschizon merolae. Bio-protocol, 9, e3355 (article ID). Strain(s): 1332,  3377  DOI: 10.21769/BioProtoc.3355 Zienkiewicz, M., Krupnik, T., Drożak, A., Wasilewska, W., Golke, A., Romanowska, E. 2018 Deletion of psbQ’ gene in Cyanidioschyzon merolae reveals the function of extrinsic PsbQ’ in PSII. Plant Mol. Biol., 96, 135–149. Keywords: Stable red algae nuclear transformation; DTA toxin; Cyanidioschyzon merolae; Chloramphenicol; acetyltransferase; PEG; PsbQ’; PSII mutants; PSII extrinsic protein deletion Strain(s): 3377  PubMed: 29196904 DOI: 10.1007/s11103-017-0685-6 Zongyi, Y., Lu, L., Chen, J., Wei, D. 2018 Effect of crude glycerol on heterotrophic growth of Chlorella pyrenoidosa and Coccomyxa subellipsoidea C-169. J. Appl. Phycol., 30, 2989–2996. Keywords: Chlorophyceae; Microalgae; Crude glycerol; Heterotrophic growth; Biodiesel Strain(s): 2166  DOI: 10.1007/s10811-018-1551-x Mihirogi, M., Kikuchi, M., Sawai, J. 2012 Development of screening algal growth inhibition test with Dunaliella sp. Jpn. J. Environ. Toxicol., 15, 11-16 (in Japanese with English summary). Strain(s): 3744  DOI: 10.11403/jset.15.11 Ueda, R. & MWakisaka, M. 2022 Effect of melatonin as a bio-stimulant of astaxanthin production from Haematococcus. J. Jpn. Inst. Energy, 101, 132-137 (in Japanese with English summary). Keywords: Astaxanthin; Bio stimulant; Haematococcus lacustris; Melatonin Strain(s): 144  DOI: 10.3775/jie.101.132 Nakai, S., Inoue, H., Hosomi, M., Okada, M., Murakami, A. 1995 Control of phytoplankton growth by bioactive compounds extracted from macrophytes. J. Jpn. Soc. Wat. Environ., 18, 1012-1019 (in Japanese with English summary). Keywords: macrophyte; algae; allelopathy; antialgal bioactive compound; growth inhibition Strain(s): 35,  87  DOI: 10.2965/jswe.18.1012 Nakai, S., Inoue, Y., Lee, B.-D., Hosomi, M. 2002 Inhibitory effects of plant-produced phenols on algal growth. Jpn. J. Limnol., 63, 201-207 (in Japanese with English summary). Keywords: 藍藻類; シキミ酸代謝経路; フェノール; 多価フェノール; 自動酸化; 増殖抑制 Strain(s): 87  DOI: 10.3739/rikusui.63.201 Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 1998 Concurrently inhibitory and allelopathic effects of allelochemicals secreted by Myriophyllum spicatum on growth of blue-green algae. J. Jpn. Soc. Wat. Environ., 21, 663-669 (in Japanese with English summary). Keywords: allelopathy; algal growth; inhibition; polyphenol; concurrent action; autoxidation Strain(s): 87  DOI: 10.2965/jswe.21.663 Nakai, S., Seto, N., Asaoka, S., Okuda, T., Nishijima, W. 2013 Impact of the allelopathic effect of a submerged macrophyte Myriophyllum spicatum on the competition between the cyanobacterium Microcystis aeruginosa and the green alga Scenedesmus obliquus). J. Jpn. Soc. Wat. Environ., 36, 85-90 (in Japanese with English summary). Keywords: Allelopathy; Cyanobacterium; Dominance prevention; Fatty acid; Polyphenol; Submerged macrophyte Strain(s): 87,  2279  DOI: 10.2965/jswe.36.85 Nakamura, M., Yamagiwa, Y., HigashiuraA, N., Tokino, S., Maeda, T. 2018 Fundamental study on application of the newly isolated Euglena to wastewater treatment. Jpn. J. Water Treat. Biol., 54, 39-46 (in Japanese with English summary). Keywords: Euglena; growth rate; wastewater treatmen Strain(s): 47,  48,  49  DOI: 10.2521/jswtb.54.39 Inoue, A., Ota, S., Matsuzaki, R., Okada, M., Kawachi, M. 2020 Exploration of high oil-producing microalgae strains using a microfluidic chip cell sorter. Jpn. J. Phycol. (Sôrui), 68, 143-152. Keywords: cell sorting; flow cytometry; on-chip Sort; lipid-producing algae; Nile Red Strain(s): 2152  Imai, I., Nishigaki, T., Okamoto, S., Yamamoto, K., Takeuchi, T., Yoshinaga, I., Hirata, H. 2013 Distributions of the algicidal microorganisms against the harmful phytoflagellates in Tanabe Bay (Wakayama Prefecture) and Osaka Bay, Japan. Bull. Fish. Sci. Hokkaido Univ., 63, 23-31 (in Japanese with English summary). Keywords: Red tide; Prevention; Killer microorganisms; Algicidal bacteria; Ulva pertusa; Seaweed beds; Karenia mikimotoi; Chattonella; Heterosigma Strain(s): 1  Nakada, T. 2018 Methods for supporting cover slip during light microscopy of unfixed microalgae, using clothing fibers or adhesive tapes. Jpn. J. Phycol. (Sôrui), 66, 157-163 (in Japanese with English summary). Keywords: adhesive tape; chemical fiber; light microscopy; microalgae; slide preparation; unfixed cells Strain(s): 544,  1849  Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T. 2016 Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata. J. Jpn. Soc. Wat. Environ., 3, 63-70 (in Japanese with English summary). Keywords: Green algar; EC50; Toxicity test; Antibacterial substance; Combined toxicity Strain(s): 35  DOI: 10.2965/jswe.39.63 Naito, K., Sakai, S., Fujinaga, S., Yoshinaga, I., Tanaka, M. 2014 Evolution of water quality at a tidal flat in the Ariake Sea by Algal Growth Potential test. J. life. Environ. Sci., 6, 17-28 (in Japanese with English summary). Keywords: Ariake Sea; AGP test; Nutrient; Iron; Microalgae Strain(s): 1,  324  Demura, M. 2020 Biomass productivity and paramylon content of 3 strains of Euglena gracilis. Bull. Fac. Agr., Saga Univ., 105, 1-7 (in Japanese with English summary). Keywords: Euglena; paramylon; biomass productivity; cost Strain(s): 47,  48,  49  Kato, T., Nakano, K., Sueyoshi, M., Tasaki, M., Kuroiwa, Y. 2020 Large-scale outdoor test of Chlorella culturing in raceway system in the Middle East. Shimizu Kensetsu Kenkyuhokoku, 97, 133-138 (in Japanese with English summary). Strain(s): 2169  Handa, S., Horiguchi, T., Ohmura, Y., Higuchi, M. 2013 Rufusiella insignis (Gloeodiniaceae, Phytodiniales), an aerial Dinoflagellate newly found in Japan. Hikobia, 16, 311-314 (in Japanese with English summary). Strain(s): 4061  Handa, S., Shoda, I., Mizobuchi, A., Nakahara-Tsubota, M., Tsubota, H. 2014 Trentepohlia bosseae var. samoensis (Trentepohliaceae, Ulvophyceae), an aerial alga newly found in Japan. J. Jpn. Bot., 89, 59-64 (in Japanese with English summary). Keywords: central pit; green alga: Japan; morphology; new record; Phycopeltis; Printzina; Trentepohlia Strain(s): 3358,  3359,  3360  Harada, K. 2022 Elucidation of phenomena involving cyanobacteria in freshwater ecosystem by chemically ecological approach. YAKUGAKU ZASSHI, 142, 39-64 (in Japanese with English summary). Keywords: chemical ecology; water bloom, β-cyclocitral, density stress, quorum sensing Strain(s): 102,  298,  843  DOI: 10.1248/yakushi.21-00146 Furusato, E., Asaeda, T., Fukuwatari, T. 2001 Tolerance against prolonged darkness of three freshwater phytoplankton. J. Jpn. Soc. Wat. Environ., 1, 27-34 (in Japanese with English summary). Keywords: artificial circulation; phytoplankton; dark survival; community succession; Microcystis aeruginosa Strain(s): 96,  298  DOI: 10.2965/jswe.24.27 Koga, T., Kashiwabara, M., Hirakawa, S., Shimizu, N., Ishibashi, Y. 2019 Development of an algal growth inhibition test as small-scale method for testing whole effluent toxicity. J. Environ. Chem., 29, 67-77 (in Japanese with English summary). Keywords: whole effluent toxicity; algal growth inhibition; small-scale method Strain(s): 35  DOI: 10.5985/jec.29.67 Natori, N., Kuwata, M., Tanaka, K., Toda, T. 2023 Plankton survey method based on scanning electron microscopy. Bull. Plankton Soc. Japan, 70, 1-9 (in Japanese with English summary). Keywords: whole effluent toxicity; drainage management; Raphidocelis subcapitata; johkasou Strain(s): 2173  DOI: 10.24763/bpsj.70.1_1 Wada, S. & Natori, K. 2021 Practice of class to measure the environmental load of antibacterial drugs by student planning experiment. -Antibiotics suppress germination and growth of plants- JSSE Research Report, 35, 55-60 (in Japanese). Strain(s): 35  DOI: 10.14935/jsser.35.8_55 Wada, S., Kumamoto, T., Yamamoto, Y., Nakasuga, H., Koike, K., Horie, H. 2020 Development of the experimental teaching materials to easily observe the environmental effects of antimicrobaials. JSSE Research Report, 34, 1-15 (in Japanese). Strain(s): 35  DOI: 10.14935/jsser.34.7_39 Tsuchiya, R., Kihira, M., Sakanoue, Y., Araki, T. 2018 Assesment of inhibition effect on growth of Microcystis aeruginosa by autoclaved water extracts from leaves of 104 woody plant species. Jpn. J. Limnol., 79, 41-48 (in Japanese with English summary). Keywords: Microcystis aeruginosa; growth inhibition; leaf extract; woody plants; blue-green algae Strain(s): 88  DOI: 10.3739/rikusui.79.41 Sakamoto, M. & Kashiwada, S. 2020 Toxicity of silver nanocolloids to Raphidocelis subcapitata. Jpn. J. Environ. Toxicol., 23, 63-66 (in Japanese with English summary). Strain(s): 35  DOI: 10.11403/jset.23.63 Tsutsumi, N., Kikuchi, M., Sawai, J. 2015 Development of algal growth inhibition test with saltwater alga Dunaliella sp. : Toxicity of 39 chemicals. Jpn. J. Environ. Toxicol., 18, 73-83 (in Japanese with English summary). Keywords: saltwater alga; Dunaliella; herbicide; toxicity; log Pow, susceptibility Strain(s): 3744  Sakai, M., Hosoda, A., Kanazawa, S. 2003 Isolation and characterization of two cyanobacteria-lytic bacterial strains from the submerged paddy soil. J. soci. soil. microbiol., 57, 21-28 (in Japanese with English summary). Keywords: Cyanobacteria; Lytic bacteria; Paddy field; Anabaena Strain(s): 19,  23,  37  DOI: 10.18946/jssm.57.1_21 Ohnishi, Y., Fujii, M., Murashige, S., Yuzawa, A., Miyasaka, H., Suzuki, Y. 2002 Decomposition precess of organic matter in sea water using phytoplankton. I. Effect of the difference in initial concentration of organic matter. Bull. Soc. Sea Water Sci. Jpn., 56, 17-25 (in Japanese with English summary). Keywords: Initial concentration; Decomposition preocess: Phytoplankton; Particulate organic matter; Dissolved organic matter Strain(s): 323  DOI: 10.11457/swsj1965.56.17 Okumura, C., Hasegawa, H., Mizumoto, H., Maki, T., Ueda, K. 2004 Size fractionation of iron compounds in phytoplankton cultures in the presence of chelating ligands. Bunseki Kagaku, 53, 1215-1221 (in Japanese with English summary). Keywords: iron; speciation; chelating ligands; phytoplankton growth Strain(s): 324  DOI: 10.2116/bunsekikagaku.53.1215 Moriya, Y. & Otaki, M. 2016 Inhibition of algal growth in water purification process by UV irradiation and observation of damage level on algal cell. J. Jpn. Soc. Wat. Environ., 39, 91-96 (in Japanese with English summary). Keywords: Algae; Water purification; Ultraviolet irradiation; Inhibitation Strain(s): 453,  2363  DOI: 10.2965/jswe.39.91 Strain(s): 24,  47,  144,  2146,  2160  Ohara, S., Uehara, T., Kimura, K. Yoshida, T., Fujiwara, S., Mizuguchi, H., Fuse, Y., Yamada, E. 2009 Behavior of humic substances and algal dissolved organic matter as precursors of trihalomethane in Lake Biwa. Bunseki Kagaku, 58, 231-240 (in Japanese with English summary). Keywords: dissolved organic matter (DOM); humic substances; algal DOM; trihalomethane precursors; Lake Biwa Strain(s): 109,  275,  665  DOI: 10.2116/bunsekikagaku.58.231 Kojima, Y., Sanae, M., Otsuka, Y., Yasue, T. 2001 Fixation of carbon dioxide and caleification of water concrete using coccolithophorid algae in seawater. J. Soc. Inorganic Materials, Japan, 8, 110-117 (in Japanese with English summary). Keywords: Coccolithophorid algae; Resource recycling of waste concrete; Coccolith; Calcification; Fixation of carbon dioxide Strain(s): 353  DOI: 10.11451/mukimate2000.8.110 Kohira, M., Matsumoto, T., Yamada, Y., Nanba, N., Kado, R. 2017 Effects of hydrogen peroxide on phytoplanktons, seaweed gametophytes, marine harpacticoid copepod and striped barnacle larvae. Sessile Organisms, 34, 1-12 (in Japanese with English summary). Keywords: hydrogen peroxide; marine ecotoxicity; seaweed gametophytes; phytoplankton; zooplankton Strain(s): 235,  324,  586,  1375,  1429  DOI: 10.4282/sosj.34.1 Komatsu, K., Onouchi, H., Imai, A., Kawasaki, N., Hashim, E. F., Mohd Rajuddin, M. K. 2019 Effects of dissolved organic matter in soil extracts on the growth of microalgae. J. Jpn. Soc. Wat. Environ., 42, 239-246 (in Japanese with English summary). Keywords: Soil extracts; Microalgae; Microplate technique; Excitation emission matrix; Molecular size distribution Strain(s): 39,  2145,  2168,  2170,  2256,  2257,  2258  DOI: 10.2965/jswe.42.239 Kobayashi, N. & Yukumoto, M. 2017 Improvement of micro algae yield by culture condition optimization. The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary). Strain(s): 96  DOI: 10.20550/jiebiomassronbun.12.0_145 Yamashita, N., Tanaka, H., Miyajima, K., Suzuki, Y. 2006 Evaluation of effect of seaage effluent on river water quality using AGP and algal growth inhibition tests. J. JSCE, 62, 191-200 (in Japanese with English summary). Keywords: AGP test; algal growth inhibition test; sewage effluent; Tama River Strain(s): 35  DOI: 10.2208/jscejg.62.191 Yamashita, N., Fukunaga, A., Tanaka, H. 2017 Examination of microplate AGP test using green algae, diatom and blue-green algae and water quality evaluation of river water and treated sewage effluent by AGP test. Environmental science, 30, 250-260 (in Japanese with English summary). Keywords: Algal growth potential; mircoplate; bioassay; eutrophication; water quality evaluation Strain(s): 35,  90,  805  DOI: 10.11353/sesj.30.250 Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M. 2004 Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton. Nippon Suisan Gakkaishi, 70, 123-130 (in Japanese with English summary). Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase Strain(s): 5,  324  DOI: 10.2331/suisan.70.123 Yamasaki, Y., Kameo, S., Wada, Y., Kitatsuji, S., Yuasa, K., Shikata, T. 2023 Toxicological risk assessment of harmful algal species using the rotifer exposure test. Bull. Plankton Soc. Japan, 70, 52-61 (in Japanese with English summary). Keywords: Brachionus plicatilis; Dinophyceae; harmful algal bloom species; lethal effect on rotifers; Raphidophyceae Strain(s): 1,  324  DOI: 10.24763/bpsj.70.2_52 Okamoto, M., Mori, A., Maeda, A., Sakamoto, S., Yamaguchi, M. 2019 Effects of temperature and salinity on the growth of toxic dinoflagellate Alexandrium ostenfeldii (Dinophyceae). Bull. Tottori Pre. Environ. Sanitation Res. Center, 58, 11-16 (in Japanese with English summary). Strain(s): 4274  Iwai, S., Hurukawa, T., Yamane, K., Kawasaki, K., Osakada, K. 2017 Micro-algae cultivation and algae-oil fuel production by enrich CO2 introduction from diesel co-generation system. Transactions of the JSME, 83, 16-00389 (article ID) (in Japanese with English summary). Keywords: Micro-algae oil; Tri-generation system; Biofuel; CO2 Strain(s): 119  DOI: 10.1299/transjsme.16-00389 Iwata, Y., Sugahara, I., Kimura, T., Kowa, H., Matsumoto, A., Noritake, K. 2004 Properties of an algicidal bacterium (Flavobacterium sp.) against Karenia mikimotoi isolated from Ise Bay, Japan. Nippon Suisan Gakkaishi, 70, 537-541 (in Japanese with English summary). Keywords: algicidal bacteria; red tide; Karenia mikimotoi; Flavobacterium Strain(s): 1,  3,  5,  32  DOI: 10.2331/suisan.70.537 Kishi, M., Onouchi, H., Tanaka, K., Yoshida, A., Toda, T. 2021 Simultaneous microalgal culture and biogas upgrading using anaerobic digestion effluent. Bull. Plankton Eco-Eng. Res., 1, 58-73 (in Japanese with English summary). Strain(s): 2173  Sako, Y. 2019 Ecophysiological studies of marine microorganisms by genome information. Nippon Suisan Gakkaishi, 85, 281-290 (in Japanese). Strain(s): 1,  7,  12,  293,  559,  603,  670  DOI: 10.2331/suisan.WA2633 Strain(s): 75,  333,  512,  805,  1642,  1666,  1677,  1696,  1723  DOI: 10.34566/jwwa.88.12_3 Shoji, R., Okita, N., nakanishi, H. 2013 Analysis of the effects of humic acid extracter from the Tama River sediment on the Pseudokirchneriella subcapitata growth inhibition by copper by NICA (non-ideal competitive adsorption)-Donnan model. J. Jpn. Soc. Wat. Environ., 36, 1-9 (in Japanese with English summary). Keywords: River sediment; Ecotoxicity; Heavy metal Strain(s): 35  DOI: 10.2965/jswe.36.1 Oshimi, M., Fujimoto, N., Ohnishi, A., Suzuki, M., Akiba, M., Kunikane, S. 2005 Isolation of bacteria lysing musty odor producing alga Phormidium tenue and its lytic characteristics. J. Jpn. Soc. Wat. Environ., 28, 379-384 (in Japanese with English summary). Keywords: alga-lytic bacteria; musty odor; Phormidium tenue; Pseudomonas KA6 Strain(s): 96,  211,  227,  244,  298,  512,  817  DOI: 10.2965/jswe.28.379 Kimura, J. 2011 Screening for allelopathic activity on algal growth. Bull. Hiroshima Pref. Tech. Res. Inst., Publ. Health Environ. Center, 19, 37-46 (in Japanese with English title). Keywords: Microcystis; Chlorella; Nitzschia; growth inhibition; allelopathy Strain(s): 88,  487,  642  Matsubara, T., Nagasoe, S., Yamasaki, Y., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2008 Inhibitory effects of centric diatoms on the growth of the dinoflagellate Akashiwo sanguinea. Nippon Suisan Gakkaishi, 74, 598-606 (in Japanese with English summary). Keywords: Akashiwo sanguinea; allelopathy; growth inhibition; centric diatoms Strain(s): 324  DOI: 10.2331/suisan.74.598 Itatsu, Y., Takano, T., Jin, J., Fukutomi, M., Kusui, T. 2015 Ecotoxicological assessment of industrial effluents: Toxicity characterization and impact on receiving water. J. Environ. Chem., 25, 19-26 (in Japanese with English summary). Keywords: whole effluent toxicity; industrial effluent; toxicity characterization Strain(s): 35  DOI: 10.5985/jec.25.19 Nemoto, M. 2021 A comparative gene analysis reveals a diatom-specific SET domain protein family. Scientific Reports of the Faculty of Agriculture, Okayama University, 110, 1-6 (in Japanese with English summary). Keywords: Biomineralization; Diatom; Silica; Protein Strain(s): 487,  1349  Morita, M., Murayama, K., Komori, K., Minamiyama, M. 2012 Evaluation of levofloxacin in chlorination by algal growth inhibition. J. Environ. Chem., 22, 183-192 (in Japanese with English summary). Keywords: hydrogen peroxide; marine ecotoxicity; seaweed gametophytes; phytoplankton; zooplankton Strain(s): 35  DOI: 10.5985/jec.22.183 Enomoto, J., Kimura, T., Nomura, Y., Kabayama, J., Maita, M. 2013 The safety of febantel for tiger puffer and its environmental impact. Nippon Suisan Gakkaishi, 79, 400-409 (in Japanese with English summary). Keywords: tiger puffer; febantel; Heterobothrium okamotoi Strain(s): 324  DOI: 10.2331/suisan.79.400 Strain(s): 1380  Takeda, F., Nakano, K., Aikawa, Y., Nishimura, O., Shimada, Y., Fukuro, S., Nakazawa, T., Tanaka, H., Hayashi, N., Inamori, Y. 2014 Analysis of impact of allelopathy by submerged macrophytes simulated by ecosystem model on microalgal biomass and community. J. Jpn. Soc. Wat. Environ., 15, 15-28 (in Japanese with English summary). Keywords: Allelopathy; Potamogeton pusillus; E cosystem model; M icroalgal community; Cladoceran Strain(s): 35,  87  DOI: 10.2965/jswe.37.15 Takeda, F., Suzuki, M., Okamoto, S., Minamiyama, M. 2018 Evaluation of four types of biological treatment processes in wastewater treatment plants with regard to reducing ability of growth-inhibiting effect on alga in summer and winter and characterization of algal growth-inhibiting chemicals. J. Jpn. Soc. Wat. Environ., 41, 179-191 (in Japanese with English summary). Keywords: Whole effluent toxicity test; Toxicity identification evaluation; Pseudokirchneriella subcapitata; Wastewater management Strain(s): 35  DOI: 10.2965/jswe.41.179 Nagai, T. 2014 河川付着藻類を用いた農薬の毒性試験マニュアル Ver. 1.0 In Research Project for Environmental Risk Assessment of Nutrients and Organochemicals, NIAES, 52 pp (in Japanese). Strain(s): 71,  487,  512,  797  Nagai, T. & Kamo, M. 2014 Comparative modeling of the effect of metal mixtures on algal growth using biotic ligand model, concentration additive, and independent action. Jpn. J. Environ. Toxicol., 17, 57-68 (in Japanese with English summary). Keywords: Zinc; Copper; Cadmium; Metal speciation; Ecological risk assessment Strain(s): 35  DOI: 10.11403/jset.17.57 Nagase, T., Okuda, M., Wakabayashi, K. 2008 The investigation of the growth characteristics of phytoplankton, a cause of mildew odor in Lake Koyama. Bull. Tottori Pre. Environ. Sanitation Res. Center, 49, 24-29 (in Japanese with English summary). Strain(s): 2871  Kawachi, Y., Tomita, T., Matsunaga, N., Murase, N. 2015 Observation of Spirulina platensis during freeze-thawing for the purpose of establishment of cryopreservation protocol. Cryobiology and Cryotechnology, 61, 65-68 (in Japanese with English summary). Strain(s): 46  DOI: 10.20585/cryobolcryotechnol.61.1_65 Fukao, T., Nishijima, T., Yamaguchi, H., Adachi, M. 2007 Utilization of urea by the 6 species of red tide phytoplankton. Bull. Plankton Soc. Japan, 54, 1-8 (in Japanese with English summary). Keywords: growth; red tide; phytoplankton; urea; uptake kinetics Strain(s): 1,  6,  237,  323,  324,  605  Fukami, K., Matsumoto, J., Kadota, T., Nakano, Y. 2000 Seasonal fluctuations of water quality of deep sea water and the relationship to the growth potential of a microalga. Deep Ocean Water Research, 1, 27-31 (in Japanese with English summary). Keywords: Deep seawater; water quality; inorganic nutrients; AGP; seasonal fluctuation; upwelling Strain(s): 324  DOI: 10.11174/dowas2000.1.1_27 Watanabe, Y. & Sakai, J. 2010 Bioluminescence imaging measurements of osillatory shear flows. J. JSCE, 66, 71-75 (in Japanese with English summary). Strain(s): 609  DOI: 10.2208/kaigan.66.71 Mizobuchi, A., Tsuchioka, H., Handa, S. 2021 Cryptophyte Urgorri complanatus causes red tides in brackish waters in Japan. Jpn. J. Phycol. (Sôrui), 69, 10-13 (in Japanese with English summary). Keywords: bloom; Cryptophyta; plankton; pyrenoids; tidal area Strain(s): 4402  Hamasaki, A. 2017 Study of the optimal cultivation for micro-algae. The 12th Conference on Biomass Science, 27-28 (in Japanese with English summary). Strain(s): 226  DOI: 10.20550/jiebiomassronbun.12.0_27 Makino, I., Yahagi, Y. 2014 Relationship between growing number of river water quality and cyanobacteria by blue-green in lake. J. Environ. Safety, 5, 19-25 (in Japanese with English summary). Keywords: sightseeing-related facilities; Microcystis aeruginosa; river water quality; fishing; fishing bait Strain(s): 1144  DOI: 10.11162/daikankyo.14G0102 Makino, I. & Yahagi, Y. 2016 Invasion course of Anabaena and Microcystis in the catchment area. J. Environ. Safety, 7, 213-219 (in Japanese with English summary). Keywords: Blue-green algal; Anabaena; Microcystis; genetic analysis; fish pond Strain(s): 823,  1164  DOI: 10.11162/daikankyo.16G0701 Hatakeyama, S. 2006 Assessment of overall herbicide effects on river ecosystems through periphyton and aquatic plants. Jpn. J. Environ. Toxicol., 9, 51-60 (in Japanese with English title). Strain(s): 35  DOI: 10.11403/jset.9.51 Shiraiwa, Y., Inouye, I., Ishida, K. 2014 放射性同位元素の除去剤および除去方法 In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Tokukai2014-6051, 30 pp. Strain(s): 2854,  2855,  2856,  2857,  2858,  2859,  2860  Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Kobayashi, K., Takabatake, H., Yamashita, N., Tanaka, H. 2015 Evalutation of toxicity reduction of treated wastewater by NF and RO membrane technologies based on algal growth inhibition test and short term toxicity test on embryo and sac-fry stages of Medaka. J. Jpn. Soc. Civill Engineers, Ser. G (Environmental Research), 71, III 179-III 187(in Japanese with English summary). Keywords: bioassay; nanofiltration membrane; reclaimed water; reverse osmosis membrane; toxicity Strain(s): 35  DOI: 10.2208/jscejer.71.III_179 Ishihara, S. 2008 Development of risk assessment pocedure for evaluating effect of herbicides on primary productivity of river ecosystem. Bull. Nat. Inst. Agro-Env. Sci., 25, 1-92 (in Japanese with English summary). Strain(s): 2717,  2718,  2719,  2720,  2721,  2722,  2723,  2724,  2725,  2726,  2727,  2728,  2729,  2730,  2731,  2732,  2733  Ishihara, S., Horio, T., Kobara, Y., Yokoyama, A. 2006 Evaluation of herbicide effects on microalgal cells by flow cytometric analysis. J. Weed Sci. Tech., 51, 239-248 (in Japanese with English summary). Keywords: herbicide; flow cytometry; algae; morphological change; recoverability; ecological risk assessment Strain(s): 71,  230  DOI: 10.3719/weed.51.239 Ishihara, S., Horio, T., Kobara, Y., Yokoyama, A., Mayama, S. 2006 Development of a growth inhibition test method using fresh water attached diatoms. Jpn. J. Environ. Toxicol., 9, 101-113 (in Japanese with English summary). Keywords: attached diatom; growth inhibition test; herbicide; ecological risk assessment Strain(s): 71,  2717,  2718,  2719,  2720,  2721,  2722,  2724,  2725,  2726,  2727,  2728,  2729,  2730,  2731,  2732,  2733  DOI: 10.11403/jset.9.101 Strain(s): 395  Ishida, Y. & MKadota, H. 1983 The so-called freshwater red tide Uroglena americana in Lake Biwa. Seikatsu Eisei, 27, 236-248 (in Japanese). Strain(s): 395  Ishifuji, S., Sato, Y., Imae, H., Takaara, T., Sano, D., Masago, Y., Omura, T. 2010 Identification of Coagulation Inhibitor Proteins from Microcystis aeruginosa. J. Jpn. Soc. Wat. Environ., 33, 73-79 (in Japanese with English summary). Keywords: Microcystis aeruginosa; coagulation inhibition; phage display; polyaluminum chloride; protein Strain(s): 91  DOI: 10.2965/jswe.33.73 Fukuzaki, K., Naito, K., Yoshioka, T., Sawayama, S., Imai, I. 2011 Effects of humic substances on the growth of the harmful Raphidophyte Chattonella antiqua. Bull. Fish. Sci. Hokkaido Univ., 61, 23-28 (in Japanese with English summary). Keywords: Chattonella antiqua; Humic substance; Iron; Artificial medium; Culture experiment Strain(s): 1  Sasao, A., Matsuo, H., Tanaka, Y. 2001 Inhibitory effect of tea (Camellia sinessis (L.) O.Kuntze var. sinensis) liquor / extract on blue-green algal growth. Jpn. J. Limnol., 62, 115-122 (in Japanese with English summary). Keywords: tea; M. aeruginosa; growth inhibitor; tannic acid Strain(s): 35  DOI: 10.3739/rikusui.62.115 Shinohara, A., Imai, A., Komatsu, K., Matsushige, K., Nara, F. 2008 Application of HPLC-PAD to highly sensitive analysis of dissolved carbohydrates and theit composition in lake water and extracellular organic matter derived from algae. J. Jpn. Soc. Wat. Environ., 31, 447-454 (in Japanese with English summary). Keywords: carbohydrates; DOM; HPLC-PAD; lake water; algal culture Strain(s): 44,  74,  204  DOI: 10.2965/jswe.31.447 Shikata, T., Sakurada, K., Jomoto, Y., Oyama, N., Onji, M., Yoshida, M., Ohwada, K. 2011 Growth dynamics of Chattonella antiqua in relation to nutrients in the Yatsushiro Sea. Nippon Suisan Gakkaishi, 77, 40-52 (in Japanese with English summary). Keywords: Chattonella; red tide; nutrient; nitrogen; iron; bioassay; Yatsushiro Sea; phosphate Strain(s): 1  DOI: 10.2331/suisan.77.40 Watanuki, T. 1994 Response to salt stress of Antarctic Dunaliella, as measured by nuclear magnetic resonance spectroscopy. JSMRM, 5, 118-120 (in Japanese). Keywords: antarctic; Dunaliella; high salt lake; salt stress; NMR; glycerol Strain(s): 3744  Watanuki, T. 1998 Organisms as measured by nuclear magnetic resonance spectrometer. Bull. Kanagawa P. H. Lab., 28, 1-15 (in Japanese). Keywords: 1H-NMR; 13C-NMR; 31P-NMR; 137Cs-NMR Strain(s): 3744  Watanuki, T., Matsushita, K., Kato, K. 1993 Response of Antarctic alga to salt stress, as measured by nuclear magnetic resonance spectroscopy. Seibutsu-Butsuri, 33, 38-41 (in Japanese). Strain(s): 3744  DOI: 10.2142/biophys.33.228 Watanuki, T., Iijima, I., Matsushita, K., Nishina, M., Sumiya, K., Kato, K. 1996 Incorporation of 13C labelled carbon into glycerol in the halotolerant alga Dunaliella. JSMRM, 7, 109-112 (in Japanese). Keywords: halotolerant species; 13C-enriched sodium bicarbonate; glycerol Strain(s): 3744  Watanuki, T., Matsushita, K., Nishina, M., Hori, E., Kato, K. 1994 J. Phys. Fit. Nutr. Immunol., 40-44 (in Japanese). Strain(s): 3744  Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T. 2016 Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples. Sessile Organisms, 33, 38-43 (in Japanese with English summary). Keywords: Residual chlorine; DPD; Seawater; Coscinodiscus wailesii Strain(s): 1,  5,  237,  323  DOI: 10.4282/sosj.33.38 Yachi, S., Nagai, T., Katsumata, M. 2016 Variation in delayed fluorescence of green algae and diatom during the exposure and a subsequent recovery period. Jpn. J. Environ. Toxicol., 19, 35-46 (in Japanese with English summary). Keywords: Recovery test; Physiological state of algae; 3,5-DCP Strain(s): 35  DOI: 10.11403/jset.19.35 Tanioka, Y. 2019 Food chemistry and physiological function of pseudovitamin B12. Vitamins (Japan), 93, 47-51 (in Japanese with English summary). Keywords: pseudovitamin B12; corrinoid compounds; cyanobacteria; meheionine synthase; shellfish Strain(s): 39  DOI: 10.20632/vso.93.2_47 Adachi, Y., Yokoyama, S.-I., Tanahashi, M. 2017 Development of antibacterial and antialgae product using wood biomass distillation (II). Bull. Ind. Technol. Center Gifu Prefectural Govt., 11, 9-11 (in Japanese). Strain(s): 31,  227  Tuji, A. & Niiyama, Y. 2018 The taxonomy of Pseudanabaena（Cyanobacteria） and characters for Jjudging the production of odor compounds. Jpn. J. Water Treat. Biol., 54, 115-120 (in Japanese with English summary). Keywords: 2－MIB; L/W ratio; Phormidium tenue; pigment; Pseudanabaena Strain(s): 512,  4059,  4062,  4063,  4064,  4065,  4237,  4238  DOI: 10.2521/jswtb.54.115 Nogami, R., Ushijima, K., Nishida, H., Wakisaka, M. 2017 Enhancement of growth and lipid production of Botryococcus braunii by steel slags. J. Jpn. Inst. Energy, 96, 372-375 (in Japanese with English summary). Keywords: Botryococcus braunii; Blast furnace slag; Growth promotion; Lipid production; Steelmaking slag Strain(s): 2199  DOI: 10.3775/jie.96.372 Nozaki, H., Sano, S., Tezuka, Y., Ooyabu, K. 2020 Morphology and taxonomy of a species of Volvox (Chlorophyceae) from Chiba Prefecture, Japan. Jpn. J. Phycol. (Sôrui), 68, 153-156 (in Japanese with English summary). Keywords: asexual spheroid; molecular phylogeny; monoicous species; morphology; sexual spheroid; taxonomy; Volvox; Volvox ferrisii; Volvox sect; Volvox Strain(s): 4465  Kaneko, H. 1997 Toxicity of municipal waste incinerator fly ash using algal growth. J. Jpn.n Soc. Waste Management Experts, b>8, 321-326 (in Japanese with English summary). Keywords: MWI fly ash; leaching test; ecotoxicity; algal assay; heavy metal Strain(s): 35  DOI: 10.3985/jswme.8.321 Kaneko, H., Takeuchi, H., Hirayama, K. 2000 Development of short-term algal toxicity test using oxygen evolution rate. Jpn. J. Environ. Toxicol., 3, 3-9 (in Japanese with English summary). Keywords: algal toxicity test; oxygen evolution; short-term bioassay; sensitivity Strain(s): 35  DOI: 10.11403/jset.3.3 Suzuki, Y. & Hirayama, S. 2019 Development of rapid and simple bioassay using seaweed Pyropia yezoensis.. J. JIME, 54, 898-904 (in Japanese with English summary). Strain(s): 16  DOI: 10.5988/jime.54.898 Sekimoto, H. 2012 Speciation and reproductive isolation in unicellular charophycean alga, Closterium peraceroum-strigosum-littorale complex. IFO Res. Commun., 26, 71-85 (in Japanese with English summary). Keywords: Closterium: heterothallism; homothallism; reproductive isolation; sex pheromone Strain(s): 58,  59,  60,  61,  62,  63,  64,  65,  67,  68,  69,  70,  261,  4548,  4551  Yukino, T., Hayashi, M., Inoue, Y., Imamura, J., Nagano, N., Murata, H. 2005 Preparation of docosahexaenoic acid fortified Spirulina platensis and its lipid and fatty acid compositions. Nippon Suisan Gakkaishi, 71, 74-79 (in Japanese with English summary). Keywords: docosahexaenoic acid; DHA; Spirulina; foods with function claims Strain(s): 39  DOI: 10.2331/suisan.71.74 Suda, S. 2008 Isolation, cultivation and phylogenetic studies of microalgae, particularly prasinophytes from coastal waters of the Nansei Islands, Japan. IFO Res. Commun., 22, 53-62 (in Japanese with English summary). Keywords: microalgae; picoeukaryotic plankton; prasinophytes; Ryukyu Islands; zooxanthellae Strain(s): 2527,  2528,  2529,  2530,  2531  Nagasoe, S., Suzuki, K., Yurimoto, T., Fuseya, R., Fukao, T., Yamatogi, T., Kimoto, K., Maeno, Y. 2011 Clearance effects of the Pacific oyster Crassostrea gigas on the fish-killing algae Chattonella marina and Chattonella antiqua. Aquat. Biol., 11, 201-211. Keywords: Clearance rate; Raphidophyte; Harmful algae; Chattonella spp. Strain(s): 2659,  2660  DOI: 10.3354/ab00295 Karitani, Y., Yamada, R., MatsumotoT., Ogino, H. 2024 UV mutagenesis improves growth potential of green algae in a green algae–yeast co‑culture system. Arch. Microbiol., 206, 61 (article ID). Keywords: Chlamydomonas reinhardtii; Co-cultivation; Photosynthesis; Saccharomyces cerevisiae; Mutagenesis; Transcriptome analysis Strain(s): 2238  PubMed: 38216809 DOI: 10.1007/s00203-023-03796-2 Kodama, Y. & Endoh, Y. 2024 Comparative analyses of the symbiotic associations of the host Paramecium bursaria with free-living and native symbiotic species of Chlorella. Curr. Microbiol., 81, 66 (article ID). Strain(s): 2169  PubMed: 38231280 DOI: 10.1007/s00284-023-03590-9 Hosoda, K., Seno, S., MurakamiN., Matsuda, H., Osada, Y., Kamiura, R., Kondoh, M. 2024 Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Biosystems, 235, 105087 (article ID). Keywords: Synthetic ecosystem; Experimental model ecosystem; Microbial microcosm; Machine learning Strain(s): 21,  35,  227,  2236  PubMed: 37989470 DOI: 10.1016/j.biosystems.2023.105087 Wijesinghe, A., Senevirathna, M. D. H. J., Fujino, T. 2023 Egeria densa organic extracts: an eco-friendly approach to suppress Microcystis aeruginosa growth through allelopathy. Water Sci. Technol., 88, 2955–2973. Keywords: allelopathy; cyanobacteria; growth inhibition; macrophytes; plant extracts Strain(s): 111  PubMed: 38096081 DOI: 10.2166/wst.2023.387 Kurtović, K., Schmidt, V., Nehasilová, M., Vosolsobĕ, S., Petrášek, J. 2023 Rediscovering Chara as a model organism for molecular and evo‑devo studies. Protoplasma, 261, 183-196. Keywords: Chara; Plant evolution; Model plants; Charophytesas Strain(s): 1604  PubMed: 37880545 DOI: 10.1007/s00709-023-01900-3 Nagi, G. K., Goel, M., Tiwari, R., Bhawna, Gaur, S., Mallick, N., Mandal, S. 2023 Simultaneous production of bio-crude bio-oil via hydrothermal liquefaction and carotenoids via supercritical extraction from Nannochloropsis oceanica and recycling effluent to establish circular processes. J. Clean Prod., 428, 13945 (article ID). Keywords: Algal biofuels; Biorefinery; Circular bioeconomy; Hydrothermal liquefaction; Microalgae; Nannochloropsis oceanica Strain(s): 2145  DOI: 10.1016/j.jclepro.2023.139450 Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY. 2017 Acidophilic green algal genome provides insights into adaptation to an acidic environment. Proc. Natl. Acad. Sci. U. S. A., 114, E8304–E8313. Keywords: acidic environment; acidophilic alga; comparative genomics; comparative transcriptomics; environmental adaptation Strain(s): 2499  PubMed: 28893987 DOI: 10.1073/pnas.1707072114 Carrillo-Carrasco, V. P., Hernandez-Garcia, J., Weijers, D. 2023 Electroporation-based delivery of proteins in Peniummargaritaceum and other zygnematophycean algae. Physiol. Plant., 175, e1412 (article ID). Strain(s): 67,  217  PubMed: 38148204 DOI: 10.1111/ppl.14121 Takusagawa, M., Misumi, O., Nozaki, H., Kato, S., Maruyama, S., Tsujimoto-Inui, Y., Yagisawa, F., Ohnuma, M., Kuroiwa, H, Kuroiwa, T., Matsunaga, S. 2024 Complete mitochondrial and chloroplast DNA sequences of the freshwater green microalga Medakamo hakoo. Genes Genet. Syst., 98, 353-360. Keywords: mitochondria; chloroplast; organelle genome; Trebouxiophyceae Strain(s): 4000  PubMed: 38267054 DOI: 10.1266/ggs.23-00275 Glass, S. E., McCourt, R. M., Gottschalk, S. D., Lewis, L. A., Karol, K. G. 2023 Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum. J. Phycol., 59, 1133-1146. Keywords: algae; Charophyta; cryptic species; Entransia; green algae; Hormidiella; Interfilum; Klebsormidium; Streptosarcina; systematics Strain(s): 477  PubMed: 37548118 DOI: 10.1111/jpy.13359 Shiraishi, H., Sasase, M., Nakashima, A. S. 2024 Helicoid morphology of Arthrospira platensis NIES-39 confers temperature compensation in the longitudinal movement velocity of its trichomes. Phycology, 4, 104-116. Keywords: Arthrospira platensis; cell movement; cyanobacteria; gliding motility; helix; multicellularity; spirulina; temperature compensation Strain(s): 39  DOI: 10.3390/phycology4010006 Wang, K., Li, w., Cui, H., Qin, S. 2023 Phylogenetic analysis and characterization of diguanylate cyclase and phosphodiesterase in planktonic filamentous cyanobacterium Arthrospira sp.. Int. J. Mol. Sci., 24, 15210 (article ID). Keywords: c-di-GMP; Arthrospira; diguanylate cyclase; phosphodiesterase; riboswitch Strain(s): 39  PubMed: 37894891 DOI: 10.3390/ijms242015210 Kato, K., Hamaguchi, T., Kumazawa, M., Nakajima, Y., Ifuku, K., Hirooka, S., Hirose, Y., Miyagishima, S., Suzuki, T., Kawakami, K., Dohmae, N., Yonekura, K., Shen, J.-R., Nagao, R. 2024 The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proc. Natl. Acad. Sci. U. S. A., 121, e2319658121 (article ID). Keywords: light-harvesting complex; photosynthesis; photosystem; red alga Strain(s): 2137  PubMed: 38442179 DOI: 10.1073/pnas.2319658121 Tsai, K.-P., Kirschman, Z. A., Moldaenke, C., Chaffin, J. D., McClure, A., Seo, Y., Bridgeman, T. B. 2024 Field and laboratory studies of fluorescence-based technologies for real-time tracking of cyanobacterial cell lysis and potential microcystins release. Sci. Total Environ., 920, 171121 (article ID). Keywords: Cyanobacterial bloom; Cell lysis; Extracellular microcystin; Unbound phycocyanin; Early warning system; Drinking water treatment Strain(s): 298  PubMed: 38382604 DOI: 10.1016/j.scitotenv.2024.171121 Zhang, K., Wan, M., Bai, W., Bao, Z., Duan, X., Wang, W., Fan, F., Li, Y. 2024 A novel heterotrophic cultivation process of Euglena gracilis based on NaCl stress significantly increases the paramylon production. Algal Res., 78, 103391 (article ID). Strain(s): 48  DOI: 10.1016/j.algal.2024.103391 Kasai, Y., Takagi, S., Ota, S., Ishii, K., Takeshita, T., Kawano, S., Harayama, S. 2024 Development of a CRISPR/Cas9-mediated gene-editing method to isolate a mutant of the unicellular green alga Parachlorella kessleri strain NIES-2152 with improved lipid productivity. Biotechnol. Biofuels Bioprod., 17, (article ID). Keywords: Parachlorella kessleri; Genetic transformationElectroporation; Genome editing; CRISPR/Cas9 Strain(s): 2152  DOI: 10.1186/s13068-024-02484-7 Nakanishi, A., Omino, N., Nakamura, T., Goto, S., Matsumoto, R., Yomogita, M., Narisawa, N., Kimijima, M., Iritani, K. 2024 Evaluation of cellular responses of heterotrophic Escherichia coli cultured with autotrophic Chlamydomonas reinhardtii as a nutrient source by analyses based on microbiology and transcriptome. Microorganisms, 12, 452 (article ID). Keywords: Escherichia coli; Chlamydomonas reinhardtii; cellular response; transcriptomics Strain(s): 2235  DOI: 10.3390/microorganisms12030452 Horikoshi, S., Hidaka, T., Nishimura, F., Kishimoto, N. 2024 Development of separation and recovery technology of cultured Euglena gracilis using activated sludge for anaerobic digestion. Bioresour. Technol. Reports, 25, 101790 (article ID). Keywords: Methane fermentation; Sewage treatment plant; Waste activated sludge Strain(s): 49  DOI: 10.1016/j.biteb.2024.101790 Feng, S., Liu, F., Zhu, S., Xu, Z., Qin, L., Feng, P., Wang, Z., Chen, H., Guo, W., Ngo, H. H. 2024 Role of hydraulic retention time in integration of microalgae and activated sludge process for nutrient recycle from diluted dairy liquid digestate. Chem. Eng. J., 484, 49538 (article ID). Keywords: Microalgae and activated sludge; Hydraulic retention time; Dairy liquid digestate; Biomass production; Pollutant removal; Metagenomic analysis Strain(s): 227  DOI: 10.1016/j.cej.2024.149538 Ramírez‑Romero, A., Da Costa Magalhães, B., Matricon, L., Sassi, J.-F., Steyer, J.-P., Delrue, F. 2024 Aqueous phase recycling: impact on microalgal lipid accumulation and biomass quality. Environ. Sci. Pollut. Res., , Keywords: Renewable feedstock; Hydrothermal liquefaction; Green fuels; Microalgal biomass; Nutrient cycling Strain(s): 227,  2173  DOI: 10.1007/s11356-024-32701-7 Ueno, Y. & Akimoto, S. 2024 Long-term light adaptation of light-harvesting and energy-transfer processes in the glaucophyte Cyanophora paradoxa under different light conditions. Photosynth. Res., 159, 165-175. Keywords: Excitation energy transfer; Light harvesting; Glaucophyte; Light adaptation; Time-resolved fuorescence spectroscopy Strain(s): 547  DOI: 10.1007/s11120-023-01029-7 Ohnuki, S., Sato, N., Fujiwara, S. 2024 Investigation of the cause of the sensitivity difference to pyrazosulfuron-ethyl between the green algae, Raphidocelis subcapitata and Desmodesmus subspicatus, focusing on target-site and nontarget-site resistance. Jpn. J. Environ. Toxicol., 27, 9-22. Keywords: Raphidocelis subcapitata; Desmodesmus subspicatus; sensitivity; sulfonylurea herbicide; cytochrome P450 Strain(s): 4282  DOI: 10.11403/jset.27.9 Coale, T. H., Loconte, V., Turk-Kubo, K. A., Vanslembrouck, B., Mak, W. K. E., Cheung, S., Ekman, A., Chen, J.-H., Hagino, K., Takano, Y., Nishimura, T., Adachi, M., Le Gros, M., Larabell, C., Zehr, J. P. 2024 Nitrogen-fixing organelle in a marine alga. Science, 384, Strain(s): 4399  PubMed: 38603509 DOI: 10.1126/science.adk1075 Zheng, S., Lee, V., Meza-Padilla, I., Nissimov, J. I. 2024 Antiviral discovery in toxic cyanobacteria: Low hanging fruit in the age of pandemics. J. Phycol., , Keywords: antiviral activity; cyanobacteria; Microcystis aeruginosa; ssRNA viruses; ssDNA viruses Strain(s): 298  DOI: 10.1111/jpy.13425 Unauthorized copying and replication of text, images, and tables in our homepage, are prohibited. 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